Wall clock time and date at job start Mon Mar 30 2020 02:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86809 * 119.99881 * 2 1 4 4 H 1.48498 * 109.46903 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46911 * 300.00121 * 3 2 1 6 6 H 1.48494 * 109.46897 * 59.99999 * 3 2 1 7 7 C 1.38810 * 120.00409 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00410 * 197.03100 * 7 2 1 9 9 N 1.36938 * 120.00111 * 17.02318 * 7 2 1 10 10 C 1.47073 * 120.88413 * 206.58049 * 9 7 2 11 11 C 1.53241 * 108.52407 * 231.16210 * 10 9 7 12 12 N 1.46894 * 109.33999 * 306.17486 * 11 10 9 13 13 C 1.46902 * 111.00043 * 187.24872 * 12 11 10 14 14 C 1.53002 * 109.47122 * 169.99741 * 13 12 11 15 15 N 1.46506 * 109.46847 * 180.02562 * 14 13 12 16 16 C 1.34776 * 119.99615 * 179.72618 * 15 14 13 17 17 O 1.21277 * 120.00146 * 0.27633 * 16 15 14 18 18 C 1.50705 * 119.99784 * 180.27777 * 16 15 14 19 19 F 1.39900 * 109.46968 * 185.00173 * 18 16 15 20 20 F 1.39899 * 109.46865 * 305.00040 * 18 16 15 21 21 C 1.46902 * 111.27008 * 63.10446 * 12 11 10 22 22 C 1.47082 * 120.87825 * 26.56369 * 9 7 2 23 23 H 0.96995 * 120.00441 * 359.97438 * 1 2 3 24 24 H 1.09010 * 109.62666 * 111.45934 * 10 9 7 25 25 H 1.08992 * 109.79343 * 350.97375 * 10 9 7 26 26 H 1.09000 * 109.49487 * 186.21243 * 11 10 9 27 27 H 1.09004 * 109.48857 * 66.13149 * 11 10 9 28 28 H 1.09008 * 109.46710 * 49.99885 * 13 12 11 29 29 H 1.09002 * 109.47103 * 290.00292 * 13 12 11 30 30 H 1.08994 * 109.47052 * 60.00578 * 14 13 12 31 31 H 1.08995 * 109.47389 * 299.99878 * 14 13 12 32 32 H 0.96994 * 119.99741 * 0.02562 * 15 14 13 33 33 H 1.08998 * 109.47150 * 64.99687 * 18 16 15 34 34 H 1.08991 * 109.49565 * 56.85299 * 21 12 11 35 35 H 1.09004 * 109.49503 * 176.93836 * 21 12 11 36 36 H 1.08998 * 109.62881 * 248.54695 * 22 9 7 37 37 H 1.09008 * 109.63123 * 9.12281 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0548 -1.2227 0.2734 9 7 1.3707 -2.3619 -0.3482 10 6 1.8311 -3.6610 0.1650 11 6 2.0026 -4.6191 -1.0186 12 7 0.7551 -4.6639 -1.7929 13 6 0.8187 -5.6979 -2.8344 14 6 -0.5688 -5.8872 -3.4506 15 7 -0.5054 -6.9189 -4.4889 16 6 -1.6180 -7.2599 -5.1688 17 8 -2.6706 -6.7092 -4.9246 18 6 -1.5541 -8.3256 -6.2325 19 9 -2.7954 -8.4226 -6.8705 20 9 -0.5724 -7.9896 -7.1708 21 6 0.4404 -3.3514 -2.3728 22 6 0.2048 -2.3415 -1.2447 23 1 -0.4850 0.8400 0.0004 24 1 1.0921 -4.0637 0.8579 25 1 2.7849 -3.5382 0.6779 26 1 2.2366 -5.6170 -0.6478 27 1 2.8140 -4.2679 -1.6561 28 1 1.1518 -6.6376 -2.3935 29 1 1.5215 -5.3908 -3.6089 30 1 -0.9018 -4.9477 -3.8915 31 1 -1.2716 -6.1944 -2.6761 32 1 0.3364 -7.3596 -4.6838 33 1 -1.3057 -9.2826 -5.7735 34 1 1.2735 -3.0179 -2.9915 35 1 -0.4586 -3.4299 -2.9842 36 1 -0.6904 -2.6172 -0.6874 37 1 0.0842 -1.3434 -1.6660 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566646081.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:41 Heat of formation + Delta-G solvation = -125.830050 kcal Electronic energy + Delta-G solvation = -21604.204205 eV Core-core repulsion = 17859.192684 eV Total energy + Delta-G solvation = -3745.011521 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.134 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.17618 -48.21946 -40.85190 -39.71651 -36.95760 -35.58029 -33.35799 -31.65978 -30.98523 -28.91165 -27.21797 -24.97321 -24.27628 -22.74792 -22.18994 -20.84672 -19.52478 -18.78422 -18.72195 -18.51563 -17.29644 -16.81192 -16.57232 -16.22401 -15.98774 -15.64511 -15.32031 -15.10596 -15.07480 -14.95318 -14.77638 -14.54921 -14.23198 -14.14617 -13.22948 -13.19843 -13.02263 -12.87613 -12.65396 -12.59517 -12.22311 -12.03939 -11.86767 -11.56931 -11.45185 -11.14565 -10.60827 -10.35862 -9.31682 -8.69732 -7.88627 -5.33474 1.00961 1.45373 1.47011 1.47830 1.57752 2.49934 2.78992 3.01302 3.19776 3.27754 3.60512 3.67343 3.77259 3.81319 4.04644 4.28575 4.34315 4.44633 4.53844 4.63954 4.70685 4.77473 4.88748 4.95320 5.03397 5.11993 5.21066 5.37131 5.60609 5.66885 6.10015 6.14430 6.23121 6.36316 6.81871 7.12091 7.83351 8.37008 9.18320 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.034976 B = 0.003175 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.360934 B = 8816.820889 C = 9129.414153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.054 4.054 3 Si 0.969 3.031 4 H -0.265 1.265 5 H -0.291 1.291 6 H -0.293 1.293 7 C -0.262 4.262 8 H 0.070 0.930 9 N -0.616 5.616 10 C 0.141 3.859 11 C 0.058 3.942 12 N -0.542 5.542 13 C 0.053 3.947 14 C 0.125 3.875 15 N -0.691 5.691 16 C 0.465 3.535 17 O -0.556 6.556 18 C 0.267 3.733 19 F -0.195 7.195 20 F -0.191 7.191 21 C 0.049 3.951 22 C 0.184 3.816 23 H 0.249 0.751 24 H 0.015 0.985 25 H 0.063 0.937 26 H 0.104 0.896 27 H 0.029 0.971 28 H 0.109 0.891 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.425 0.575 33 H 0.199 0.801 34 H 0.023 0.977 35 H 0.075 0.925 36 H -0.004 1.004 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.465 -20.356 -11.206 23.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.249 4.249 3 Si 0.797 3.203 4 H -0.189 1.189 5 H -0.218 1.218 6 H -0.220 1.220 7 C -0.393 4.393 8 H 0.088 0.912 9 N -0.340 5.340 10 C 0.015 3.985 11 C -0.071 4.071 12 N -0.267 5.267 13 C -0.075 4.075 14 C 0.001 3.999 15 N -0.345 5.345 16 C 0.247 3.753 17 O -0.434 6.434 18 C 0.210 3.790 19 F -0.177 7.177 20 F -0.172 7.172 21 C -0.081 4.081 22 C 0.058 3.942 23 H 0.059 0.941 24 H 0.033 0.967 25 H 0.081 0.919 26 H 0.122 0.878 27 H 0.047 0.953 28 H 0.128 0.872 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.264 0.736 33 H 0.215 0.785 34 H 0.042 0.958 35 H 0.094 0.906 36 H 0.014 0.986 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.281 -19.938 -10.718 22.751 hybrid contribution 0.831 1.513 -0.499 1.797 sum 3.111 -18.425 -11.217 21.794 Atomic orbital electron populations 1.70198 1.06746 1.25776 1.55603 1.25821 0.96057 1.01613 1.01405 0.85189 0.78657 0.79763 0.76727 1.18878 1.21779 1.21967 1.19589 0.92963 0.85962 1.40744 0.91210 1.44434 1.34146 1.02365 1.53042 1.21171 0.97557 0.85435 0.94304 1.22479 0.89015 1.00391 0.95192 1.61752 1.35100 1.05186 1.24707 1.22217 0.94644 0.96932 0.93738 1.21281 0.98622 0.90431 0.89613 1.45651 1.11629 1.39964 1.37233 1.21704 0.84569 0.84777 0.84229 1.90838 1.31167 1.53816 1.67555 1.22008 0.72862 1.01129 0.82974 1.93031 1.44225 1.97051 1.83347 1.93061 1.61818 1.94409 1.67944 1.22617 0.99332 0.89546 0.96555 1.20601 0.87883 0.96357 0.89337 0.94140 0.96686 0.91882 0.87792 0.95298 0.87239 0.93385 0.92909 0.91104 0.73636 0.78478 0.95838 0.90643 0.98583 0.92764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.45 11.15 21.65 0.24 -56.21 16 2 C -0.05 -3.04 4.94 84.86 0.42 -2.62 16 3 Si 0.97 45.10 29.59 68.60 2.03 47.13 16 4 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 5 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 6 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 7 C -0.26 -14.51 9.63 84.03 0.81 -13.70 16 8 H 0.07 3.72 7.89 -2.91 -0.02 3.70 16 9 N -0.62 -31.29 3.04 -698.12 -2.12 -33.41 16 10 C 0.14 5.70 6.69 86.35 0.58 6.28 16 11 C 0.06 1.77 5.62 86.38 0.49 2.26 16 12 N -0.54 -16.76 4.63 -895.24 -4.14 -20.90 16 13 C 0.05 1.07 5.08 86.30 0.44 1.51 16 14 C 0.12 2.73 5.61 86.38 0.48 3.22 16 15 N -0.69 -10.53 5.56 -463.05 -2.57 -13.10 16 16 C 0.46 9.18 7.63 87.66 0.67 9.84 16 17 O -0.56 -17.41 16.62 -3.02 -0.05 -17.46 16 18 C 0.27 3.22 5.72 71.24 0.41 3.63 16 19 F -0.20 -3.83 16.95 44.97 0.76 -3.07 16 20 F -0.19 -2.58 17.32 44.97 0.78 -1.80 16 21 C 0.05 1.84 5.46 86.38 0.47 2.31 16 22 C 0.18 9.15 5.42 86.35 0.47 9.61 16 23 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 24 H 0.02 0.64 8.14 -2.38 -0.02 0.62 16 25 H 0.06 2.42 7.96 -2.39 -0.02 2.40 16 26 H 0.10 2.38 7.99 -2.39 -0.02 2.36 16 27 H 0.03 0.90 8.14 -2.38 -0.02 0.88 16 28 H 0.11 1.58 7.97 -2.38 -0.02 1.56 16 29 H 0.05 0.91 8.12 -2.39 -0.02 0.89 16 30 H 0.05 1.44 6.40 -2.39 -0.02 1.42 16 31 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.43 3.02 8.47 -92.71 -0.79 2.24 16 33 H 0.20 0.07 8.14 -2.39 -0.02 0.05 16 34 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.08 2.65 6.16 -2.38 -0.01 2.63 16 36 H 0.00 -0.22 8.14 -2.39 -0.02 -0.23 16 37 H 0.05 3.04 6.12 -2.38 -0.01 3.03 16 Total: -1.00 -75.64 312.20 0.46 -75.18 By element: Atomic # 1 Polarization: 0.99 SS G_CDS: 0.30 Total: 1.29 kcal Atomic # 6 Polarization: 17.11 SS G_CDS: 5.23 Total: 22.34 kcal Atomic # 7 Polarization: -115.02 SS G_CDS: -8.60 Total: -123.62 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.05 Total: -17.46 kcal Atomic # 9 Polarization: -6.41 SS G_CDS: 1.54 Total: -4.87 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -75.64 0.46 -75.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566646081.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.649 kcal (2) G-P(sol) polarization free energy of solvation -75.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds