Wall clock time and date at job start Mon Mar 30 2020 01:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47614 * 2 1 4 4 C 1.50698 * 109.47413 * 239.99426 * 2 1 3 5 5 H 1.07994 * 120.00445 * 240.00117 * 4 2 1 6 6 C 1.37881 * 119.99672 * 60.00754 * 4 2 1 7 7 N 1.31521 * 120.00034 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00079 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46909 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47047 * 119.99850 * 8 6 4 11 11 H 1.48497 * 109.47298 * 239.99462 * 8 6 4 12 12 N 1.46504 * 109.46968 * 119.99660 * 2 1 3 13 13 C 1.46507 * 119.99802 * 60.00043 * 12 2 1 14 14 S 1.65589 * 120.00303 * 240.00049 * 12 2 1 15 15 O 1.42108 * 106.40487 * 156.45930 * 14 12 2 16 16 O 1.42097 * 106.40464 * 23.53975 * 14 12 2 17 17 N 1.65602 * 107.22157 * 270.00152 * 14 12 2 18 18 C 1.46502 * 120.00089 * 64.99655 * 17 14 12 19 19 C 1.53000 * 109.47113 * 165.00370 * 18 17 14 20 20 H 1.09000 * 113.03139 * 306.72019 * 19 18 17 21 21 C 1.53935 * 113.75704 * 175.00079 * 19 18 17 22 22 C 1.53934 * 86.45688 * 222.01365 * 21 19 18 23 23 N 1.47967 * 86.18229 * 23.66908 * 22 21 19 24 24 H 1.08993 * 109.47130 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47245 * 300.00529 * 1 2 3 26 26 H 1.09006 * 109.46669 * 60.00192 * 1 2 3 27 27 H 0.97001 * 119.99890 * 180.02562 * 7 6 4 28 28 H 1.08994 * 109.46985 * 270.00039 * 13 12 2 29 29 H 1.08999 * 109.46798 * 30.00129 * 13 12 2 30 30 H 1.08993 * 109.46824 * 150.00009 * 13 12 2 31 31 H 0.97002 * 119.99920 * 245.00426 * 17 14 12 32 32 H 1.08995 * 109.46732 * 45.00318 * 18 17 14 33 33 H 1.09001 * 109.46989 * 285.00419 * 18 17 14 34 34 H 1.09002 * 113.73405 * 107.60297 * 21 19 18 35 35 H 1.09002 * 113.73357 * 336.42207 * 21 19 18 36 36 H 1.09001 * 113.76241 * 137.98405 * 22 21 19 37 37 H 1.08993 * 113.76195 * 269.35483 * 22 21 19 38 38 H 1.00897 * 111.00188 * 222.41768 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 0.9430 0.8297 -2.6034 8 14 2.3227 -1.1196 -4.0079 9 1 3.1485 -2.2857 -3.6036 10 1 1.1680 -1.5867 -4.8165 11 1 3.1475 -0.1859 -4.8160 12 7 2.0183 -0.6906 1.1963 13 6 1.6643 -2.0932 1.4281 14 16 2.9703 0.1142 2.2863 15 8 2.8226 -0.5646 3.5260 16 8 2.6903 1.4972 2.1193 17 7 4.5437 -0.1042 1.8182 18 6 5.0140 0.4530 0.5475 19 6 6.5437 0.4449 0.5221 20 1 6.9872 0.9346 1.3890 21 6 7.1441 0.8981 -0.8210 22 6 8.1474 -0.2572 -0.6534 23 7 7.1304 -0.8823 0.2210 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 0.7084 1.1609 -3.4845 28 1 0.7375 -2.1443 1.9994 29 1 1.5295 -2.5968 0.4709 30 1 2.4627 -2.5818 1.9865 31 1 5.1539 -0.6011 2.3853 32 1 4.6542 1.4767 0.4444 33 1 4.6337 -0.1505 -0.2768 34 1 7.6029 1.8863 -0.7852 35 1 6.4690 0.7735 -1.6676 36 1 8.3365 -0.8115 -1.5727 37 1 9.0608 0.0267 -0.1310 38 1 7.5574 -1.2848 1.0418 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575911945.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:42 Heat of formation + Delta-G solvation = -70.672095 kcal Electronic energy + Delta-G solvation = -21158.632724 eV Core-core repulsion = 17969.853418 eV Total energy + Delta-G solvation = -3188.779306 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.33938 -38.32639 -37.84957 -36.88893 -35.71273 -34.47271 -30.89716 -29.15124 -28.12815 -27.23660 -26.97975 -24.00309 -22.56334 -20.74161 -20.11794 -18.69983 -18.40068 -18.30500 -17.99322 -17.30204 -16.66593 -16.05195 -15.46190 -15.33112 -15.04932 -14.81436 -14.46473 -13.74051 -13.65112 -13.46213 -13.35725 -13.18709 -13.12797 -13.05640 -12.94629 -12.72926 -12.65835 -12.60519 -12.16451 -12.11457 -11.86627 -11.84372 -11.59486 -11.15265 -10.46876 -10.43025 -9.79529 -9.63499 -8.05812 -6.19411 -0.26503 1.45256 1.49361 1.59296 2.02993 2.48174 2.63778 3.09335 3.22754 3.44284 3.64023 3.92478 4.11971 4.16769 4.35318 4.42481 4.67050 4.70580 4.74431 4.82017 4.90560 4.99320 5.00318 5.01020 5.10676 5.19419 5.27056 5.28382 5.32859 5.64037 5.71987 5.86880 6.09668 6.23234 6.33071 6.43129 6.89989 7.49917 8.98864 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.012126 B = 0.009728 C = 0.006188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.483767 B = 2877.553520 C = 4523.904053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.273 3.727 3 H 0.027 0.973 4 C -0.521 4.521 5 H 0.066 0.934 6 C 0.021 3.979 7 N -0.916 5.916 8 Si 0.953 3.047 9 H -0.267 1.267 10 H -0.285 1.285 11 H -0.283 1.283 12 N -0.997 5.997 13 C 0.103 3.897 14 S 2.799 3.201 15 O -1.010 7.010 16 O -1.017 7.017 17 N -1.111 6.111 18 C 0.138 3.862 19 C 0.032 3.968 20 H 0.101 0.899 21 C -0.144 4.144 22 C 0.013 3.987 23 N -0.646 5.646 24 H 0.042 0.958 25 H 0.017 0.983 26 H 0.070 0.930 27 H 0.263 0.737 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.420 0.580 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.326 0.674 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.626 -3.135 4.680 13.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.168 3.832 3 H 0.045 0.955 4 C -0.560 4.560 5 H 0.085 0.915 6 C -0.179 4.179 7 N -0.556 5.556 8 Si 0.780 3.220 9 H -0.191 1.191 10 H -0.212 1.212 11 H -0.209 1.209 12 N -0.839 5.839 13 C -0.043 4.043 14 S 2.808 3.192 15 O -0.994 6.994 16 O -1.001 7.001 17 N -0.873 5.873 18 C 0.011 3.989 19 C -0.080 4.080 20 H 0.119 0.881 21 C -0.182 4.182 22 C -0.117 4.117 23 N -0.272 5.272 24 H 0.061 0.939 25 H 0.037 0.963 26 H 0.089 0.911 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.255 0.745 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 11.555 -2.846 4.692 12.792 hybrid contribution 0.839 -0.159 -0.429 0.955 sum 12.394 -3.005 4.263 13.446 Atomic orbital electron populations 1.21948 0.98081 0.99980 0.99903 1.18421 0.91869 0.91461 0.81424 0.95478 1.21569 1.31146 1.12831 0.90452 0.91549 1.25599 0.95228 0.95547 1.01543 1.70021 1.37456 1.23972 1.24136 0.85579 0.77964 0.78763 0.79723 1.19090 1.21166 1.20916 1.57587 1.65252 1.22391 1.38670 1.21333 1.00278 0.80563 1.02095 1.01128 0.73194 0.72733 0.72178 1.93522 1.86527 1.76112 1.43251 1.93530 1.84811 1.34761 1.86982 1.55515 1.29293 1.70799 1.31667 1.21200 0.94823 0.98086 0.84747 1.23472 0.93288 0.91884 0.99336 0.88107 1.23397 0.98388 0.99832 0.96627 1.23619 0.94406 0.94719 0.98924 1.66934 1.23465 1.18644 1.18187 0.93880 0.96343 0.91129 0.92807 0.93054 0.90637 0.90925 0.74487 0.91770 0.91556 0.89059 0.90506 0.89520 0.89206 0.86050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.72 8.97 71.98 0.65 -6.08 16 2 C 0.27 13.30 2.62 44.24 0.12 13.42 16 3 H 0.03 1.50 6.91 -2.39 -0.02 1.48 16 4 C -0.52 -26.15 7.66 25.60 0.20 -25.96 16 5 H 0.07 3.27 7.33 -2.91 -0.02 3.24 16 6 C 0.02 1.06 5.30 84.65 0.45 1.51 16 7 N -0.92 -50.28 11.32 21.45 0.24 -50.04 16 8 Si 0.95 41.38 29.54 68.60 2.03 43.40 16 9 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 10 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 12 N -1.00 -41.19 3.12 -520.44 -1.62 -42.81 16 13 C 0.10 3.61 9.29 127.77 1.19 4.80 16 14 S 2.80 109.16 6.09 -56.49 -0.34 108.82 16 15 O -1.01 -40.51 17.21 -128.00 -2.20 -42.71 16 16 O -1.02 -47.08 16.17 -128.00 -2.07 -49.15 16 17 N -1.11 -34.39 6.05 -187.49 -1.14 -35.53 16 18 C 0.14 4.43 6.28 86.38 0.54 4.97 16 19 C 0.03 0.76 4.31 44.98 0.19 0.95 16 20 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 21 C -0.14 -3.09 7.85 31.24 0.25 -2.85 16 22 C 0.01 0.23 8.90 86.41 0.77 1.00 16 23 N -0.65 -14.26 8.34 -502.23 -4.19 -18.45 16 24 H 0.04 1.92 7.67 -2.39 -0.02 1.90 16 25 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.07 3.72 6.07 -2.38 -0.01 3.71 16 27 H 0.26 13.75 8.31 -92.71 -0.77 12.98 16 28 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.07 2.70 7.02 -2.39 -0.02 2.68 16 30 H 0.07 2.19 7.79 -2.39 -0.02 2.17 16 31 H 0.42 10.42 8.65 -96.74 -0.84 9.58 16 32 H 0.06 2.26 7.75 -2.39 -0.02 2.24 16 33 H 0.07 2.50 7.82 -2.39 -0.02 2.48 16 34 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.08 2.00 8.10 -2.39 -0.02 1.98 16 36 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.33 5.72 8.92 -89.70 -0.80 4.92 16 Total: -1.00 -64.88 321.55 -5.52 -70.40 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: -0.57 Total: 24.29 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: 4.34 Total: -8.23 kcal Atomic # 7 Polarization: -140.12 SS G_CDS: -6.71 Total: -146.83 kcal Atomic # 8 Polarization: -87.59 SS G_CDS: -4.27 Total: -91.86 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.40 kcal Atomic # 16 Polarization: 109.16 SS G_CDS: -0.34 Total: 108.82 kcal Total: -64.88 -5.52 -70.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575911945.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.270 kcal (2) G-P(sol) polarization free energy of solvation -64.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds