Wall clock time and date at job start Mon Mar 30 2020 01:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46916 * 2 1 4 4 C 1.50695 * 109.46792 * 119.99658 * 2 1 3 5 5 H 1.08007 * 119.99518 * 116.62101 * 4 2 1 6 6 C 1.37878 * 120.00221 * 296.61397 * 4 2 1 7 7 N 1.31505 * 119.99866 * 351.84190 * 6 4 2 8 8 Si 1.86806 * 119.99789 * 171.83783 * 6 4 2 9 9 H 1.48504 * 109.46915 * 265.25540 * 8 6 4 10 10 H 1.48495 * 109.47316 * 25.25440 * 8 6 4 11 11 H 1.48501 * 109.47011 * 145.25649 * 8 6 4 12 12 N 1.46496 * 109.46741 * 239.99725 * 2 1 3 13 13 C 1.46495 * 120.00466 * 299.99721 * 12 2 1 14 14 S 1.65606 * 119.99610 * 120.00307 * 12 2 1 15 15 O 1.42104 * 106.39793 * 203.53325 * 14 12 2 16 16 O 1.42097 * 106.40203 * 336.45604 * 14 12 2 17 17 N 1.65604 * 107.21933 * 89.99771 * 14 12 2 18 18 C 1.46496 * 120.00134 * 64.99612 * 17 14 12 19 19 C 1.53001 * 109.47305 * 165.00179 * 18 17 14 20 20 H 1.08994 * 112.74591 * 56.26540 * 19 18 17 21 21 C 1.53510 * 113.47602 * 187.11892 * 19 18 17 22 22 C 1.53510 * 83.57616 * 140.78857 * 21 19 18 23 23 N 1.47478 * 87.93204 * 333.97445 * 22 21 19 24 24 H 1.09001 * 109.47383 * 185.90443 * 1 2 3 25 25 H 1.08998 * 109.47585 * 305.90769 * 1 2 3 26 26 H 1.09003 * 109.47272 * 65.91148 * 1 2 3 27 27 H 0.97001 * 120.00173 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.47082 * 90.00114 * 13 12 2 29 29 H 1.09003 * 109.47625 * 210.00441 * 13 12 2 30 30 H 1.08999 * 109.46999 * 330.00658 * 13 12 2 31 31 H 0.96993 * 119.99506 * 245.00124 * 17 14 12 32 32 H 1.09000 * 109.47102 * 285.00371 * 18 17 14 33 33 H 1.09009 * 109.47020 * 45.00201 * 18 17 14 34 34 H 1.09004 * 114.16836 * 254.43429 * 21 19 18 35 35 H 1.08997 * 114.17422 * 27.13975 * 21 19 18 36 36 H 1.09001 * 113.48038 * 219.20146 * 22 21 19 37 37 H 1.09005 * 113.52772 * 88.74767 * 22 21 19 38 38 H 1.00900 * 111.00353 * 138.70399 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 1.2305 5 1 2.6074 -1.6192 1.1323 6 6 1.7577 -0.1999 2.4815 7 7 1.1995 0.9849 2.6003 8 14 2.1785 -1.1914 4.0078 9 1 0.9851 -1.9606 4.4429 10 1 3.2866 -2.1303 3.6982 11 1 2.5983 -0.2716 5.0954 12 7 2.0182 -0.6907 -1.1961 13 6 1.6644 -2.0932 -1.4279 14 16 2.9703 0.1141 -2.2862 15 8 2.8227 -0.5647 -3.5258 16 8 2.6903 1.4972 -2.1193 17 7 4.5437 -0.1043 -1.8180 18 6 5.1357 -1.4441 -1.8414 19 6 6.6577 -1.3312 -1.7334 20 1 6.9778 -0.7834 -0.8472 21 6 7.3852 -2.6697 -1.9227 22 6 8.3976 -1.8131 -2.6959 23 7 7.3020 -0.8664 -2.9760 24 1 -0.3634 -1.0222 0.1057 25 1 -0.3634 0.6027 0.8323 26 1 -0.3634 0.4194 -0.9382 27 1 1.0060 1.3439 3.4804 28 1 0.7375 -2.1444 -1.9993 29 1 2.4628 -2.5820 -1.9863 30 1 1.5294 -2.5968 -0.4707 31 1 5.0732 0.6549 -1.5282 32 1 4.7539 -2.0247 -1.0017 33 1 4.8736 -1.9408 -2.7757 34 1 7.7764 -3.0993 -1.0005 35 1 6.8451 -3.3879 -2.5395 36 1 8.7879 -2.3019 -3.5886 37 1 9.1833 -1.3942 -2.0671 38 1 7.6166 0.0880 -2.8850 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575911949.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:43 Heat of formation + Delta-G solvation = -70.762816 kcal Electronic energy + Delta-G solvation = -20876.175807 eV Core-core repulsion = 17687.392568 eV Total energy + Delta-G solvation = -3188.783240 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.59301 -38.29866 -37.85975 -36.87279 -35.71348 -34.46414 -30.99072 -29.18372 -28.16677 -27.19972 -26.97700 -23.87719 -22.63584 -20.86003 -20.08131 -18.75200 -18.35720 -18.26791 -17.89390 -17.36987 -16.76753 -16.03714 -15.63231 -15.16646 -15.05337 -14.81137 -14.44689 -13.80586 -13.68855 -13.46076 -13.35895 -13.21911 -13.17711 -12.94010 -12.89493 -12.78740 -12.64836 -12.61907 -12.19122 -12.15914 -12.03517 -11.84868 -11.49760 -11.20193 -10.48049 -10.35213 -9.91588 -9.64931 -8.09650 -6.20947 -0.24880 1.46700 1.49070 1.57776 2.05480 2.47598 2.64400 3.21006 3.22762 3.47156 3.57863 3.90020 4.10196 4.19595 4.33815 4.48769 4.51576 4.71805 4.76054 4.81788 4.86395 4.91753 4.96251 5.02228 5.09129 5.13161 5.23619 5.25547 5.27863 5.58499 5.67665 5.86412 6.01591 6.19601 6.29305 6.34581 6.88341 7.47650 8.97727 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.016721 B = 0.006685 C = 0.005367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.167824 B = 4187.550775 C = 5215.380643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.271 3.729 3 H 0.026 0.974 4 C -0.528 4.528 5 H 0.073 0.927 6 C 0.016 3.984 7 N -0.921 5.921 8 Si 0.958 3.042 9 H -0.279 1.279 10 H -0.261 1.261 11 H -0.292 1.292 12 N -0.996 5.996 13 C 0.098 3.902 14 S 2.799 3.201 15 O -1.009 7.009 16 O -1.022 7.022 17 N -1.115 6.115 18 C 0.133 3.867 19 C 0.023 3.977 20 H 0.091 0.909 21 C -0.133 4.133 22 C 0.004 3.996 23 N -0.643 5.643 24 H 0.048 0.952 25 H 0.053 0.947 26 H 0.023 0.977 27 H 0.263 0.737 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.417 0.583 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.324 0.676 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.033 -8.281 -5.835 15.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.166 3.834 3 H 0.044 0.956 4 C -0.567 4.567 5 H 0.091 0.909 6 C -0.184 4.184 7 N -0.560 5.560 8 Si 0.784 3.216 9 H -0.204 1.204 10 H -0.185 1.185 11 H -0.218 1.218 12 N -0.838 5.838 13 C -0.048 4.048 14 S 2.808 3.192 15 O -0.992 6.992 16 O -1.007 7.007 17 N -0.877 5.877 18 C 0.007 3.993 19 C -0.090 4.090 20 H 0.109 0.891 21 C -0.171 4.171 22 C -0.126 4.126 23 N -0.269 5.269 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.042 0.958 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.251 0.749 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 11.092 -8.129 -7.251 15.546 hybrid contribution 0.688 0.632 2.139 2.334 sum 11.780 -7.497 -5.112 14.870 Atomic orbital electron populations 1.21872 0.98017 1.00495 0.98815 1.18406 0.91732 0.91679 0.81559 0.95582 1.21611 1.34349 1.10260 0.90473 0.90893 1.25711 0.95292 0.95416 1.01930 1.70092 1.44183 1.17276 1.24443 0.85551 0.78611 0.78520 0.78934 1.20442 1.18526 1.21798 1.57587 1.65273 1.22445 1.38471 1.21426 1.00469 0.80528 1.02332 1.01098 0.73178 0.71894 0.72981 1.93521 1.86621 1.76325 1.42752 1.93530 1.84750 1.35067 1.87316 1.55577 1.30640 1.16296 1.85141 1.21393 0.93637 0.82326 1.01950 1.23444 0.93268 0.98529 0.93716 0.89142 1.23215 0.96953 0.95274 1.01670 1.23516 0.94063 0.94570 1.00475 1.67350 1.17358 1.08273 1.33896 0.93246 0.92853 0.95785 0.92838 0.93101 0.90775 0.90147 0.74895 0.90675 0.90744 0.88711 0.88675 0.89355 0.90147 0.86347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.26 8.85 71.98 0.64 -5.62 16 2 C 0.27 13.21 2.51 44.24 0.11 13.32 16 3 H 0.03 1.47 6.90 -2.39 -0.02 1.46 16 4 C -0.53 -26.27 8.00 25.60 0.20 -26.06 16 5 H 0.07 3.42 7.22 -2.91 -0.02 3.40 16 6 C 0.02 0.84 5.24 84.66 0.44 1.28 16 7 N -0.92 -51.32 12.00 21.45 0.26 -51.06 16 8 Si 0.96 40.57 29.55 68.60 2.03 42.59 16 9 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 10 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 11 H -0.29 -12.49 7.11 99.48 0.71 -11.79 16 12 N -1.00 -40.49 3.12 -520.47 -1.62 -42.11 16 13 C 0.10 3.27 9.40 127.77 1.20 4.47 16 14 S 2.80 110.96 6.10 -56.49 -0.34 110.61 16 15 O -1.01 -41.77 16.68 -128.00 -2.14 -43.90 16 16 O -1.02 -48.53 16.70 -128.00 -2.14 -50.67 16 17 N -1.11 -34.89 6.05 -187.48 -1.14 -36.03 16 18 C 0.13 3.46 6.26 86.38 0.54 4.00 16 19 C 0.02 0.46 4.05 42.19 0.17 0.63 16 20 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 21 C -0.13 -2.06 8.01 30.94 0.25 -1.81 16 22 C 0.00 0.05 8.61 83.57 0.72 0.77 16 23 N -0.64 -13.11 8.50 -519.16 -4.41 -17.52 16 24 H 0.05 2.15 7.87 -2.39 -0.02 2.13 16 25 H 0.05 2.75 6.83 -2.39 -0.02 2.74 16 26 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 28 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.07 2.09 7.79 -2.39 -0.02 2.07 16 30 H 0.08 2.66 6.96 -2.39 -0.02 2.65 16 31 H 0.42 11.91 8.65 -96.75 -0.84 11.07 16 32 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.07 2.03 7.75 -2.38 -0.02 2.01 16 34 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 35 H 0.09 1.51 8.12 -2.39 -0.02 1.49 16 36 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 38 H 0.32 5.93 8.91 -89.69 -0.80 5.13 16 Total: -1.00 -66.99 323.25 -5.80 -72.79 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: -0.57 Total: 24.31 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: 4.28 Total: -9.01 kcal Atomic # 7 Polarization: -139.81 SS G_CDS: -6.92 Total: -146.72 kcal Atomic # 8 Polarization: -90.30 SS G_CDS: -4.27 Total: -94.58 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.59 kcal Atomic # 16 Polarization: 110.96 SS G_CDS: -0.34 Total: 110.61 kcal Total: -66.99 -5.80 -72.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575911949.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.024 kcal (2) G-P(sol) polarization free energy of solvation -66.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds