Wall clock time and date at job start Mon Mar 30 2020 01:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47124 * 2 1 4 4 C 1.50703 * 109.46918 * 119.99301 * 2 1 3 5 5 H 1.08001 * 119.99552 * 119.99789 * 4 2 1 6 6 C 1.37874 * 120.00101 * 300.00253 * 4 2 1 7 7 N 1.31507 * 120.00392 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99618 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46961 * 179.97438 * 8 6 4 10 10 H 1.48501 * 109.47509 * 299.99631 * 8 6 4 11 11 H 1.48499 * 109.47623 * 60.00000 * 8 6 4 12 12 N 1.46494 * 109.47401 * 239.99408 * 2 1 3 13 13 C 1.46498 * 120.00222 * 300.00691 * 12 2 1 14 14 S 1.65600 * 120.00002 * 120.00189 * 12 2 1 15 15 O 1.42104 * 106.40048 * 203.54272 * 14 12 2 16 16 O 1.42097 * 106.40322 * 336.45937 * 14 12 2 17 17 N 1.65603 * 107.21892 * 90.00263 * 14 12 2 18 18 C 1.46495 * 120.00012 * 64.99857 * 17 14 12 19 19 C 1.53001 * 109.47492 * 165.13068 * 18 17 14 20 20 N 1.46899 * 115.54968 * 279.61289 * 19 18 17 21 21 C 1.52997 * 117.50005 * 133.89781 * 19 18 17 22 22 C 1.53001 * 117.49455 * 65.27539 * 19 18 17 23 23 H 1.09006 * 109.47236 * 300.00544 * 1 2 3 24 24 H 1.09006 * 109.47129 * 60.00229 * 1 2 3 25 25 H 1.08998 * 109.47486 * 180.02562 * 1 2 3 26 26 H 0.97003 * 120.00434 * 179.97438 * 7 6 4 27 27 H 1.08997 * 109.47711 * 89.99337 * 13 12 2 28 28 H 1.08999 * 109.47493 * 210.00311 * 13 12 2 29 29 H 1.09000 * 109.46944 * 329.99292 * 13 12 2 30 30 H 0.96998 * 119.99875 * 245.00293 * 17 14 12 31 31 H 1.08999 * 109.47447 * 285.13666 * 18 17 14 32 32 H 1.09005 * 109.47132 * 45.12986 * 18 17 14 33 33 H 1.00899 * 111.00087 * 300.67129 * 20 19 18 34 34 H 1.00909 * 110.99991 * 64.62518 * 20 19 18 35 35 H 1.09000 * 117.49796 * 0.02562 * 21 19 18 36 36 H 1.08998 * 117.49831 * 145.02634 * 21 19 18 37 37 H 1.09001 * 117.50044 * 214.98062 * 22 19 18 38 38 H 1.09000 * 117.49791 * 0.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6531 -1.5884 1.1315 6 6 1.6991 -0.2391 2.4828 7 7 0.9434 0.8304 2.6034 8 14 2.3212 -1.1201 4.0080 9 1 1.8268 -0.4195 5.2205 10 1 1.8256 -2.5199 4.0080 11 1 3.8062 -1.1207 4.0084 12 7 2.0183 -0.6907 -1.1960 13 6 1.6644 -2.0932 -1.4278 14 16 2.9705 0.1140 -2.2861 15 8 2.8228 -0.5649 -3.5257 16 8 2.6904 1.4971 -2.1193 17 7 4.5438 -0.1044 -1.8178 18 6 5.1357 -1.4442 -1.8412 19 6 6.6575 -1.3316 -1.7299 20 7 7.3613 -1.0017 -2.9764 21 6 7.3647 -2.2639 -0.7442 22 6 7.2310 -0.7733 -0.4259 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 0.7087 1.1617 3.4844 27 1 0.7375 -2.1445 -1.9992 28 1 2.4628 -2.5821 -1.9860 29 1 1.5294 -2.5969 -0.4706 30 1 5.0734 0.6548 -1.5280 31 1 4.7521 -2.0257 -1.0028 32 1 4.8756 -1.9402 -2.7764 33 1 7.1856 -1.6974 -3.6858 34 1 7.1075 -0.0810 -3.3022 35 1 6.7459 -2.9578 -0.1753 36 1 8.3524 -2.6328 -1.0206 37 1 8.1307 -0.1617 -0.4929 38 1 6.5241 -0.4867 0.3528 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575912706.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:40 Heat of formation + Delta-G solvation = -53.511197 kcal Electronic energy + Delta-G solvation = -21062.026661 eV Core-core repulsion = 17873.991507 eV Total energy + Delta-G solvation = -3188.035153 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.49751 -36.70522 -36.17625 -35.29470 -33.82541 -32.63967 -31.15774 -29.12054 -26.15107 -25.50208 -25.21605 -22.45446 -20.83147 -19.85317 -18.82661 -17.30241 -16.88513 -16.41547 -16.30175 -15.51414 -15.30503 -14.98058 -14.50076 -14.02391 -13.48697 -13.38738 -13.18218 -12.75282 -12.60542 -12.03389 -11.84248 -11.65543 -11.55659 -11.42065 -11.40545 -11.25118 -11.00817 -10.90542 -10.64724 -10.47298 -10.25155 -10.11119 -9.97651 -9.46881 -9.28702 -8.84551 -8.51804 -8.00620 -6.12939 -4.21911 1.21292 3.22120 3.28168 3.28676 3.37371 3.78936 4.11667 4.21098 4.31695 4.57695 4.92326 4.93914 5.05236 5.17557 5.46139 5.58000 5.65540 5.68520 5.77012 5.94897 6.03512 6.12300 6.20385 6.30136 6.61949 6.84422 6.84583 7.03533 7.08232 7.19590 7.26410 7.48947 7.58618 7.74816 8.01346 8.22078 8.80478 9.44443 10.92050 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.015480 B = 0.007798 C = 0.005849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.353819 B = 3589.657052 C = 4785.748443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.268 3.732 3 H 0.059 0.941 4 C -0.527 4.527 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.897 3.103 9 H -0.287 1.287 10 H -0.277 1.277 11 H -0.277 1.277 12 N -0.990 5.990 13 C 0.106 3.894 14 S 2.783 3.217 15 O -1.001 7.001 16 O -0.981 6.981 17 N -1.126 6.126 18 C 0.133 3.867 19 C 0.023 3.977 20 N -0.810 5.810 21 C -0.153 4.153 22 C -0.157 4.157 23 H 0.092 0.908 24 H 0.012 0.988 25 H 0.032 0.968 26 H 0.265 0.735 27 H 0.043 0.957 28 H 0.047 0.953 29 H 0.080 0.920 30 H 0.413 0.587 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.344 0.656 34 H 0.346 0.654 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.850 -5.501 -6.519 12.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.166 3.834 3 H 0.076 0.924 4 C -0.566 4.566 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.524 5.524 8 Si 0.724 3.276 9 H -0.212 1.212 10 H -0.203 1.203 11 H -0.203 1.203 12 N -0.832 5.832 13 C -0.041 4.041 14 S 2.792 3.208 15 O -0.984 6.984 16 O -0.965 6.965 17 N -0.884 5.884 18 C 0.004 3.996 19 C -0.072 4.072 20 N -0.339 5.339 21 C -0.191 4.191 22 C -0.195 4.195 23 H 0.111 0.889 24 H 0.031 0.969 25 H 0.051 0.949 26 H 0.075 0.925 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.098 0.902 30 H 0.246 0.754 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.158 0.842 34 H 0.159 0.841 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 9.020 -5.109 -6.799 12.397 hybrid contribution -0.331 -0.336 0.972 1.081 sum 8.690 -5.445 -5.826 11.794 Atomic orbital electron populations 1.22055 0.97973 0.99657 1.00756 1.18718 0.91871 0.92728 0.80130 0.92376 1.21319 1.32008 1.13122 0.90172 0.92023 1.24921 0.94941 0.94960 0.98981 1.69865 1.36080 1.22523 1.23963 0.86595 0.79145 0.79660 0.82165 1.21236 1.20290 1.20252 1.57689 1.64431 1.21320 1.39793 1.21201 0.98960 0.82099 1.01823 1.01782 0.72607 0.73110 0.73328 1.93534 1.86089 1.76429 1.42374 1.93596 1.83596 1.32489 1.86860 1.56030 1.32256 1.14732 1.85430 1.21260 0.92197 0.84027 1.02153 1.21460 0.89739 1.07242 0.88730 1.58606 1.61669 1.07661 1.05944 1.23085 1.01851 0.93460 1.00708 1.23094 1.03013 0.96598 0.96793 0.88917 0.96896 0.94878 0.92540 0.93840 0.93404 0.90158 0.75406 0.90876 0.90771 0.84248 0.84088 0.88354 0.88236 0.88281 0.87780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 8.97 37.15 0.33 -3.09 16 2 C 0.27 6.45 2.62 -69.09 -0.18 6.27 16 3 H 0.06 1.56 6.91 -51.93 -0.36 1.20 16 4 C -0.53 -13.19 7.99 -34.44 -0.28 -13.46 16 5 H 0.06 1.48 7.33 -52.49 -0.38 1.10 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -24.09 11.32 55.43 0.63 -23.46 16 8 Si 0.90 20.03 29.54 -169.99 -5.02 15.00 16 9 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 12 N -0.99 -20.00 3.12 -115.86 -0.36 -20.37 16 13 C 0.11 1.83 9.28 59.85 0.56 2.39 16 14 S 2.78 53.12 6.09 -107.50 -0.66 52.47 16 15 O -1.00 -20.00 16.68 -57.17 -0.95 -20.95 16 16 O -0.98 -22.12 16.70 -57.17 -0.95 -23.08 16 17 N -1.13 -17.11 6.03 -10.61 -0.06 -17.17 16 18 C 0.13 1.75 6.38 -4.04 -0.03 1.72 16 19 C 0.02 0.27 2.62 -131.60 -0.34 -0.08 16 20 N -0.81 -8.42 9.70 0.74 0.01 -8.41 16 21 C -0.15 -1.63 10.10 -26.73 -0.27 -1.90 16 22 C -0.16 -1.83 9.95 -26.73 -0.27 -2.09 16 23 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 24 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.03 0.73 7.67 -51.93 -0.40 0.33 16 26 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 27 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.71 7.79 -51.93 -0.40 0.30 16 29 H 0.08 1.41 7.02 -51.93 -0.36 1.05 16 30 H 0.41 5.83 8.47 -34.47 -0.29 5.54 16 31 H 0.07 0.99 7.94 -51.93 -0.41 0.57 16 32 H 0.07 0.95 7.75 -51.93 -0.40 0.55 16 33 H 0.34 3.18 9.08 -39.29 -0.36 2.82 16 34 H 0.35 3.50 9.08 -39.29 -0.36 3.14 16 35 H 0.10 1.01 8.08 -51.93 -0.42 0.59 16 36 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 325.95 15.07 4.91 4.91 Total: -1.00 -30.35 325.95 -8.75 -39.10 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -5.72 Total: 10.61 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -0.57 Total: -8.66 kcal Atomic # 7 Polarization: -69.61 SS G_CDS: 0.21 Total: -69.40 kcal Atomic # 8 Polarization: -42.12 SS G_CDS: -1.91 Total: -44.03 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.00 kcal Atomic # 16 Polarization: 53.12 SS G_CDS: -0.66 Total: 52.47 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.35 -8.75 -39.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575912706.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.410 kcal (2) G-P(sol) polarization free energy of solvation -30.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds