Wall clock time and date at job start Mon Mar 30 2020 01:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47124 * 2 1 4 4 C 1.50703 * 109.46918 * 119.99301 * 2 1 3 5 5 H 1.08001 * 119.99552 * 119.99789 * 4 2 1 6 6 C 1.37874 * 120.00101 * 300.00253 * 4 2 1 7 7 N 1.31507 * 120.00392 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99618 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46961 * 179.97438 * 8 6 4 10 10 H 1.48501 * 109.47509 * 299.99631 * 8 6 4 11 11 H 1.48499 * 109.47623 * 60.00000 * 8 6 4 12 12 N 1.46494 * 109.47401 * 239.99408 * 2 1 3 13 13 C 1.46498 * 120.00222 * 300.00691 * 12 2 1 14 14 S 1.65600 * 120.00002 * 120.00189 * 12 2 1 15 15 O 1.42104 * 106.40048 * 203.54272 * 14 12 2 16 16 O 1.42097 * 106.40322 * 336.45937 * 14 12 2 17 17 N 1.65603 * 107.21892 * 90.00263 * 14 12 2 18 18 C 1.46495 * 120.00012 * 64.99857 * 17 14 12 19 19 C 1.53001 * 109.47492 * 165.13068 * 18 17 14 20 20 N 1.46899 * 115.54968 * 279.61289 * 19 18 17 21 21 C 1.52997 * 117.50005 * 133.89781 * 19 18 17 22 22 C 1.53001 * 117.49455 * 65.27539 * 19 18 17 23 23 H 1.09006 * 109.47236 * 300.00544 * 1 2 3 24 24 H 1.09006 * 109.47129 * 60.00229 * 1 2 3 25 25 H 1.08998 * 109.47486 * 180.02562 * 1 2 3 26 26 H 0.97003 * 120.00434 * 179.97438 * 7 6 4 27 27 H 1.08997 * 109.47711 * 89.99337 * 13 12 2 28 28 H 1.08999 * 109.47493 * 210.00311 * 13 12 2 29 29 H 1.09000 * 109.46944 * 329.99292 * 13 12 2 30 30 H 0.96998 * 119.99875 * 245.00293 * 17 14 12 31 31 H 1.08999 * 109.47447 * 285.13666 * 18 17 14 32 32 H 1.09005 * 109.47132 * 45.12986 * 18 17 14 33 33 H 1.00899 * 111.00087 * 300.67129 * 20 19 18 34 34 H 1.00909 * 110.99991 * 64.62518 * 20 19 18 35 35 H 1.09000 * 117.49796 * 0.02562 * 21 19 18 36 36 H 1.08998 * 117.49831 * 145.02634 * 21 19 18 37 37 H 1.09001 * 117.50044 * 214.98062 * 22 19 18 38 38 H 1.09000 * 117.49791 * 0.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6531 -1.5884 1.1315 6 6 1.6991 -0.2391 2.4828 7 7 0.9434 0.8304 2.6034 8 14 2.3212 -1.1201 4.0080 9 1 1.8268 -0.4195 5.2205 10 1 1.8256 -2.5199 4.0080 11 1 3.8062 -1.1207 4.0084 12 7 2.0183 -0.6907 -1.1960 13 6 1.6644 -2.0932 -1.4278 14 16 2.9705 0.1140 -2.2861 15 8 2.8228 -0.5649 -3.5257 16 8 2.6904 1.4971 -2.1193 17 7 4.5438 -0.1044 -1.8178 18 6 5.1357 -1.4442 -1.8412 19 6 6.6575 -1.3316 -1.7299 20 7 7.3613 -1.0017 -2.9764 21 6 7.3647 -2.2639 -0.7442 22 6 7.2310 -0.7733 -0.4259 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 0.7087 1.1617 3.4844 27 1 0.7375 -2.1445 -1.9992 28 1 2.4628 -2.5821 -1.9860 29 1 1.5294 -2.5969 -0.4706 30 1 5.0734 0.6548 -1.5280 31 1 4.7521 -2.0257 -1.0028 32 1 4.8756 -1.9402 -2.7764 33 1 7.1856 -1.6974 -3.6858 34 1 7.1075 -0.0810 -3.3022 35 1 6.7459 -2.9578 -0.1753 36 1 8.3524 -2.6328 -1.0206 37 1 8.1307 -0.1617 -0.4929 38 1 6.5241 -0.4867 0.3528 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575912706.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:40 Heat of formation + Delta-G solvation = -77.950153 kcal Electronic energy + Delta-G solvation = -21063.086414 eV Core-core repulsion = 17873.991507 eV Total energy + Delta-G solvation = -3189.094906 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.44681 -38.33529 -37.89162 -36.93100 -35.01746 -34.50861 -31.99736 -30.93773 -27.35849 -27.18983 -26.93190 -23.33232 -22.62938 -20.84656 -20.29039 -18.80350 -18.41092 -18.25217 -17.59563 -16.91682 -16.41618 -16.25136 -15.88065 -15.28582 -14.99292 -14.89601 -14.50044 -14.29978 -13.76117 -13.68605 -13.46647 -13.24292 -13.16089 -12.99235 -12.94842 -12.73361 -12.68141 -12.29971 -12.22641 -12.12939 -11.90894 -11.53625 -11.20360 -10.89106 -10.58867 -10.48565 -9.80338 -9.64187 -8.08555 -6.23676 -0.31289 1.47434 1.47695 1.55046 1.96247 2.45832 2.57754 2.87110 3.20076 3.35202 3.42001 3.69067 3.93777 4.04441 4.11425 4.47893 4.66927 4.74064 4.77954 4.80577 4.84338 4.86330 4.96396 5.03101 5.08159 5.14615 5.25698 5.33733 5.60570 5.65986 5.83812 6.02648 6.13785 6.21138 6.28865 6.49807 6.85456 7.46171 8.95920 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.015480 B = 0.007798 C = 0.005849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.353819 B = 3589.657052 C = 4785.748443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.274 3.726 3 H 0.024 0.976 4 C -0.528 4.528 5 H 0.072 0.928 6 C 0.016 3.984 7 N -0.919 5.919 8 Si 0.958 3.042 9 H -0.292 1.292 10 H -0.269 1.269 11 H -0.270 1.270 12 N -0.996 5.996 13 C 0.099 3.901 14 S 2.800 3.200 15 O -1.007 7.007 16 O -1.020 7.020 17 N -1.115 6.115 18 C 0.127 3.873 19 C 0.022 3.978 20 N -0.807 5.807 21 C -0.140 4.140 22 C -0.165 4.165 23 H 0.069 0.931 24 H 0.017 0.983 25 H 0.044 0.956 26 H 0.263 0.737 27 H 0.050 0.950 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.419 0.581 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.352 0.648 34 H 0.347 0.653 35 H 0.104 0.896 36 H 0.110 0.890 37 H 0.104 0.896 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.231 -7.332 -6.685 14.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.169 3.831 3 H 0.042 0.958 4 C -0.568 4.568 5 H 0.090 0.910 6 C -0.184 4.184 7 N -0.558 5.558 8 Si 0.784 3.216 9 H -0.218 1.218 10 H -0.194 1.194 11 H -0.195 1.195 12 N -0.838 5.838 13 C -0.047 4.047 14 S 2.809 3.191 15 O -0.991 6.991 16 O -1.004 7.004 17 N -0.877 5.877 18 C -0.001 4.001 19 C -0.073 4.073 20 N -0.337 5.337 21 C -0.178 4.178 22 C -0.203 4.203 23 H 0.088 0.912 24 H 0.036 0.964 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.253 0.747 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.166 0.834 34 H 0.161 0.839 35 H 0.122 0.878 36 H 0.129 0.871 37 H 0.122 0.878 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 10.404 -6.965 -6.990 14.340 hybrid contribution -0.719 0.219 0.954 1.215 sum 9.685 -6.746 -6.036 13.257 Atomic orbital electron populations 1.21947 0.98027 1.00054 0.99863 1.18379 0.91854 0.91390 0.81459 0.95834 1.21592 1.31566 1.13120 0.90502 0.91029 1.25691 0.95207 0.95588 1.01879 1.70011 1.37445 1.24027 1.24361 0.85615 0.78827 0.78703 0.78478 1.21759 1.19406 1.19469 1.57574 1.65225 1.22433 1.38536 1.21410 1.00464 0.80547 1.02280 1.01120 0.73099 0.71915 0.72994 1.93521 1.86593 1.76323 1.42631 1.93541 1.84613 1.34984 1.87289 1.55703 1.30722 1.16108 1.85118 1.21480 0.93419 0.82605 1.02578 1.21381 0.88667 1.08007 0.89254 1.58620 1.61179 1.08052 1.05885 1.23157 1.02250 0.92839 0.99573 1.23074 1.02987 0.97715 0.96517 0.91247 0.96362 0.93709 0.92785 0.93133 0.90656 0.90354 0.74675 0.90885 0.89985 0.83364 0.83943 0.87780 0.87136 0.87775 0.89149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.64 8.97 71.98 0.65 -5.99 16 2 C 0.27 13.20 2.62 44.25 0.12 13.32 16 3 H 0.02 1.31 6.91 -2.39 -0.02 1.29 16 4 C -0.53 -26.15 7.99 25.60 0.20 -25.94 16 5 H 0.07 3.33 7.33 -2.91 -0.02 3.31 16 6 C 0.02 0.82 5.30 84.66 0.45 1.27 16 7 N -0.92 -50.64 11.32 21.45 0.24 -50.40 16 8 Si 0.96 40.50 29.54 68.60 2.03 42.53 16 9 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 10 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 11 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 12 N -1.00 -39.45 3.12 -520.48 -1.62 -41.07 16 13 C 0.10 3.22 9.28 127.77 1.19 4.41 16 14 S 2.80 105.06 6.09 -56.49 -0.34 104.72 16 15 O -1.01 -38.73 16.68 -128.00 -2.14 -40.87 16 16 O -1.02 -46.57 16.70 -128.00 -2.14 -48.71 16 17 N -1.11 -32.59 6.03 -187.49 -1.13 -33.72 16 18 C 0.13 3.09 6.38 86.38 0.55 3.64 16 19 C 0.02 0.47 2.62 3.53 0.01 0.48 16 20 N -0.81 -14.93 9.70 -151.56 -1.47 -16.40 16 21 C -0.14 -2.61 10.10 30.59 0.31 -2.30 16 22 C -0.17 -3.54 9.95 30.60 0.30 -3.24 16 23 H 0.07 3.65 6.07 -2.38 -0.01 3.63 16 24 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 25 H 0.04 1.96 7.67 -2.39 -0.02 1.94 16 26 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 27 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.07 2.03 7.79 -2.39 -0.02 2.01 16 29 H 0.08 2.59 7.02 -2.39 -0.02 2.58 16 30 H 0.42 11.50 8.47 -96.75 -0.82 10.68 16 31 H 0.07 1.80 7.94 -2.39 -0.02 1.78 16 32 H 0.08 1.88 7.75 -2.38 -0.02 1.86 16 33 H 0.35 5.61 9.08 -89.69 -0.81 4.80 16 34 H 0.35 6.34 9.08 -89.69 -0.81 5.53 16 35 H 0.10 1.84 8.08 -2.39 -0.02 1.82 16 36 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -63.65 325.95 -4.16 -67.81 By element: Atomic # 1 Polarization: 31.83 SS G_CDS: -1.36 Total: 30.48 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: 3.77 Total: -14.36 kcal Atomic # 7 Polarization: -137.62 SS G_CDS: -3.98 Total: -141.60 kcal Atomic # 8 Polarization: -85.30 SS G_CDS: -4.27 Total: -89.57 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Atomic # 16 Polarization: 105.06 SS G_CDS: -0.34 Total: 104.72 kcal Total: -63.65 -4.16 -67.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575912706.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.145 kcal (2) G-P(sol) polarization free energy of solvation -63.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds