Wall clock time and date at job start Mon Mar 30 2020 01:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09006 * 109.47304 * 2 1 4 4 C 1.50707 * 109.47289 * 119.99994 * 2 1 3 5 5 H 1.07999 * 120.00009 * 120.00076 * 4 2 1 6 6 C 1.37879 * 119.99903 * 299.99923 * 4 2 1 7 7 N 1.31520 * 119.99814 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99795 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47014 * 60.00444 * 8 6 4 10 10 H 1.48501 * 109.46890 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47254 * 300.00047 * 8 6 4 12 12 N 1.46497 * 109.47250 * 240.00016 * 2 1 3 13 13 C 1.46499 * 120.00233 * 302.31400 * 12 2 1 14 14 S 1.65604 * 119.99913 * 122.31747 * 12 2 1 15 15 O 1.42103 * 106.39892 * 159.01381 * 14 12 2 16 16 O 1.42094 * 106.40421 * 26.09019 * 14 12 2 17 17 N 1.65606 * 107.21513 * 272.54820 * 14 12 2 18 18 C 1.46493 * 120.00511 * 296.52388 * 17 14 12 19 19 C 1.53004 * 112.93402 * 306.32884 * 18 17 14 20 20 C 1.53930 * 113.73435 * 77.88929 * 18 17 14 21 21 N 1.48191 * 86.09691 * 90.78375 * 20 18 17 22 22 C 1.47957 * 90.79999 * 24.60336 * 21 20 18 23 23 H 1.09001 * 109.47221 * 184.93256 * 1 2 3 24 24 H 1.09007 * 109.47233 * 304.92960 * 1 2 3 25 25 H 1.09004 * 109.47267 * 64.93263 * 1 2 3 26 26 H 0.97000 * 119.99569 * 179.97438 * 7 6 4 27 27 H 1.08998 * 109.47601 * 270.00092 * 13 12 2 28 28 H 1.09009 * 109.46823 * 30.00186 * 13 12 2 29 29 H 1.09004 * 109.47135 * 149.99791 * 13 12 2 30 30 H 0.96997 * 119.99204 * 116.52094 * 17 14 12 31 31 H 1.08996 * 109.47386 * 60.91027 * 19 18 17 32 32 H 1.08999 * 109.47320 * 300.90093 * 19 18 17 33 33 H 1.09004 * 109.46728 * 180.90726 * 19 18 17 34 34 H 1.09000 * 113.76486 * 205.06052 * 20 18 17 35 35 H 1.08997 * 113.76413 * 336.43523 * 20 18 17 36 36 H 1.00904 * 111.06718 * 137.52340 * 21 20 18 37 37 H 1.09004 * 113.75630 * 221.08519 * 22 21 20 38 38 H 1.08995 * 113.86093 * 89.73250 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9427 0.8297 2.6034 8 14 2.3214 -1.1203 4.0079 9 1 3.8064 -1.1208 4.0081 10 1 1.8260 -0.4206 5.2204 11 1 1.8258 -2.5203 4.0077 12 7 2.0183 -0.6906 -1.1961 13 6 1.6231 -2.0775 -1.4539 14 16 3.0172 0.0965 -2.2568 15 8 3.6949 -0.9121 -2.9935 16 8 3.6919 1.0965 -1.5059 17 7 2.0511 0.8961 -3.3385 18 6 1.1650 0.1406 -4.2273 19 6 1.9007 -0.9349 -5.0291 20 6 -0.1159 -0.3664 -3.5404 21 7 -0.7323 0.9095 -3.9742 22 6 0.2415 1.0274 -5.0818 23 1 -0.3634 -1.0239 0.0884 24 1 -0.3634 0.5884 0.8426 25 1 -0.3634 0.4354 -0.9309 26 1 0.7081 1.1609 3.4844 27 1 2.3438 -2.7525 -0.9925 28 1 0.6343 -2.2580 -1.0319 29 1 1.5968 -2.2539 -2.5293 30 1 2.0720 1.8648 -3.3834 31 1 2.3530 -1.6527 -4.3448 32 1 2.6790 -0.4689 -5.6335 33 1 1.1942 -1.4494 -5.6805 34 1 -0.5494 -1.2470 -4.0145 35 1 -0.0244 -0.4659 -2.4589 36 1 -1.6655 0.7598 -4.3275 37 1 0.6182 2.0396 -5.2295 38 1 -0.0856 0.5560 -6.0085 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575913074.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:37 Heat of formation + Delta-G solvation = -60.400996 kcal Electronic energy + Delta-G solvation = -21790.764631 eV Core-core repulsion = 18602.430713 eV Total energy + Delta-G solvation = -3188.333917 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.85616 -38.29688 -37.88705 -36.86144 -34.51843 -34.39935 -30.94198 -30.45602 -27.58584 -26.95878 -26.74564 -25.19568 -22.55134 -21.00235 -19.91289 -18.73779 -18.57039 -18.19133 -17.46878 -16.95779 -16.79181 -16.16006 -15.16284 -15.15473 -15.00038 -14.51101 -14.28717 -13.95613 -13.73268 -13.70095 -13.36396 -13.20161 -13.12677 -12.97604 -12.92444 -12.78209 -12.74370 -12.57083 -12.23784 -12.18831 -12.02915 -11.81527 -11.27513 -11.11728 -10.49383 -10.41511 -9.77502 -9.59156 -8.09882 -6.23517 -0.28256 1.42683 1.44998 1.51873 2.01731 2.44130 2.64769 3.15390 3.18087 3.30221 3.52078 3.88978 4.04563 4.22556 4.40514 4.46558 4.64846 4.78567 4.82540 4.84654 4.86963 4.93661 5.02386 5.12344 5.16807 5.21324 5.27237 5.34865 5.47147 5.63906 5.73178 5.90084 6.09138 6.22775 6.31894 6.44144 6.84072 7.45283 8.93963 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.026609 B = 0.006729 C = 0.006151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.040614 B = 4160.061090 C = 4550.733570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.280 3.720 3 H 0.017 0.983 4 C -0.540 4.540 5 H 0.056 0.944 6 C 0.017 3.983 7 N -0.914 5.914 8 Si 0.954 3.046 9 H -0.280 1.280 10 H -0.282 1.282 11 H -0.265 1.265 12 N -0.993 5.993 13 C 0.101 3.899 14 S 2.795 3.205 15 O -0.998 6.998 16 O -1.024 7.024 17 N -1.094 6.094 18 C 0.136 3.864 19 C -0.171 4.171 20 C -0.030 4.030 21 N -0.644 5.644 22 C 0.024 3.976 23 H 0.041 0.959 24 H 0.059 0.941 25 H 0.043 0.957 26 H 0.264 0.736 27 H 0.041 0.959 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.420 0.580 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.330 0.670 37 H 0.092 0.908 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.093 -3.540 -16.636 17.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.176 3.824 3 H 0.035 0.965 4 C -0.580 4.580 5 H 0.074 0.926 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.780 3.220 9 H -0.206 1.206 10 H -0.207 1.207 11 H -0.190 1.190 12 N -0.835 5.835 13 C -0.045 4.045 14 S 2.805 3.195 15 O -0.981 6.981 16 O -1.009 7.009 17 N -0.854 5.854 18 C 0.046 3.954 19 C -0.230 4.230 20 C -0.161 4.161 21 N -0.270 5.270 22 C -0.107 4.107 23 H 0.060 0.940 24 H 0.078 0.922 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.060 0.940 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.255 0.745 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.110 0.890 36 H 0.143 0.857 37 H 0.111 0.889 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.007 -3.032 -15.899 16.674 hybrid contribution -0.164 -0.323 0.609 0.709 sum -4.171 -3.355 -15.290 16.200 Atomic orbital electron populations 1.21912 0.96596 1.00334 1.00082 1.18290 0.92284 0.90791 0.81076 0.96543 1.21665 1.31669 1.13014 0.91621 0.92606 1.25642 0.95240 0.95717 1.01662 1.69995 1.37287 1.23705 1.24326 0.85674 0.78390 0.79096 0.78839 1.20606 1.20716 1.19021 1.57519 1.67915 1.22309 1.35774 1.21434 1.01507 0.80810 1.00700 1.01276 0.73521 0.72500 0.72250 1.93514 1.72626 1.59651 1.72339 1.93546 1.73654 1.61760 1.71898 1.55468 1.59047 1.18550 1.52352 1.21763 0.89077 0.93406 0.91138 1.22444 1.01480 0.98086 1.00952 1.24783 0.94104 0.93686 1.03534 1.66927 1.05788 1.28318 1.25989 1.24073 0.91457 1.00817 0.94402 0.93972 0.92176 0.93819 0.92712 0.94045 0.90268 0.90064 0.74477 0.91239 0.91568 0.88226 0.87910 0.89015 0.85661 0.88947 0.87357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.84 8.07 71.98 0.58 -5.26 16 2 C 0.28 13.89 2.59 44.25 0.11 14.00 16 3 H 0.02 0.95 7.02 -2.38 -0.02 0.94 16 4 C -0.54 -29.67 8.40 25.60 0.22 -29.46 16 5 H 0.06 3.04 7.72 -2.91 -0.02 3.02 16 6 C 0.02 0.95 5.30 84.65 0.45 1.40 16 7 N -0.91 -52.25 11.37 21.45 0.24 -52.01 16 8 Si 0.95 43.92 29.54 68.60 2.03 45.95 16 9 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 12 N -0.99 -40.43 2.18 -520.44 -1.14 -41.57 16 13 C 0.10 3.36 8.15 127.77 1.04 4.40 16 14 S 2.80 109.83 6.04 -56.49 -0.34 109.49 16 15 O -1.00 -39.05 13.97 -128.00 -1.79 -40.84 16 16 O -1.02 -50.40 16.81 -128.00 -2.15 -52.56 16 17 N -1.09 -32.40 5.83 -155.26 -0.90 -33.30 16 18 C 0.14 3.09 1.44 5.17 0.01 3.09 16 19 C -0.17 -3.51 8.42 71.98 0.61 -2.90 16 20 C -0.03 -0.66 7.38 86.36 0.64 -0.02 16 21 N -0.64 -13.49 8.53 -523.17 -4.46 -17.95 16 22 C 0.02 0.40 8.19 86.41 0.71 1.11 16 23 H 0.04 1.77 6.81 -2.39 -0.02 1.75 16 24 H 0.06 3.07 6.22 -2.38 -0.01 3.06 16 25 H 0.04 1.73 6.34 -2.38 -0.02 1.72 16 26 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 27 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.08 2.50 6.41 -2.38 -0.02 2.49 16 29 H 0.08 2.16 5.91 -2.38 -0.01 2.15 16 30 H 0.42 11.59 8.75 -96.75 -0.85 10.75 16 31 H 0.07 1.76 4.64 -2.39 -0.01 1.75 16 32 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.10 1.63 8.10 -2.39 -0.02 1.61 16 35 H 0.09 2.59 3.16 -2.39 -0.01 2.59 16 36 H 0.33 5.29 8.92 -89.69 -0.80 4.50 16 37 H 0.09 1.54 8.09 -2.38 -0.02 1.52 16 38 H 0.11 1.12 8.10 -2.39 -0.02 1.10 16 Total: -1.00 -70.25 302.49 -4.70 -74.95 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: -0.55 Total: 21.48 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: 4.36 Total: -13.63 kcal Atomic # 7 Polarization: -138.58 SS G_CDS: -6.26 Total: -144.84 kcal Atomic # 8 Polarization: -89.46 SS G_CDS: -3.94 Total: -93.40 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: 109.83 SS G_CDS: -0.34 Total: 109.49 kcal Total: -70.25 -4.70 -74.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575913074.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.546 kcal (2) G-P(sol) polarization free energy of solvation -70.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds