Wall clock time and date at job start Mon Mar 30 2020 01:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47535 * 2 1 4 4 C 1.46500 * 120.00381 * 275.45638 * 3 2 1 5 5 C 1.50704 * 109.46832 * 280.35508 * 4 3 2 6 6 H 1.08005 * 119.99747 * 4.54396 * 5 4 3 7 7 C 1.37873 * 119.99924 * 184.54835 * 5 4 3 8 8 N 1.31516 * 120.00215 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99761 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47351 * 60.00260 * 9 7 5 11 11 H 1.48506 * 109.46886 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47238 * 300.00023 * 9 7 5 13 13 S 1.65600 * 119.99902 * 95.44931 * 3 2 1 14 14 O 1.42103 * 106.40248 * 337.60001 * 13 3 2 15 15 O 1.42104 * 106.40397 * 204.68178 * 13 3 2 16 16 N 1.65599 * 107.22093 * 91.14112 * 13 3 2 17 17 C 1.46493 * 119.99876 * 66.81046 * 16 13 3 18 18 C 1.53003 * 109.47138 * 161.69911 * 17 16 13 19 19 N 1.46908 * 115.55939 * 38.78001 * 18 17 16 20 20 C 1.53000 * 117.50253 * 184.46880 * 18 17 16 21 21 C 1.52998 * 60.00026 * 107.49000 * 20 18 17 22 22 H 1.09001 * 109.46837 * 305.03543 * 1 2 3 23 23 H 1.08992 * 109.47284 * 65.03226 * 1 2 3 24 24 H 1.08999 * 109.47092 * 185.03865 * 1 2 3 25 25 H 1.09002 * 109.46910 * 240.00197 * 2 1 3 26 26 H 1.08997 * 109.47631 * 120.00729 * 2 1 3 27 27 H 1.08998 * 109.47265 * 40.34939 * 4 3 2 28 28 H 1.08993 * 109.47649 * 160.35701 * 4 3 2 29 29 H 0.96998 * 120.00186 * 180.02562 * 8 7 5 30 30 H 0.97003 * 119.99768 * 246.81580 * 16 13 3 31 31 H 1.09000 * 109.47194 * 41.69921 * 17 16 13 32 32 H 1.09001 * 109.47515 * 281.69872 * 17 16 13 33 33 H 1.00901 * 110.99726 * 326.56185 * 19 18 17 34 34 H 1.00898 * 110.99892 * 90.51829 * 19 18 17 35 35 H 1.08997 * 117.49318 * 359.97438 * 20 18 17 36 36 H 1.08997 * 117.49822 * 214.98348 * 20 18 17 37 37 H 1.08995 * 117.50032 * 107.49035 * 21 20 18 38 38 H 1.08996 * 117.49899 * 252.48873 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1489 2.1121 -1.2629 5 6 3.4203 1.6943 -1.9560 6 1 4.0289 0.9059 -1.5383 7 6 3.8064 2.3186 -3.1230 8 7 3.0649 3.2783 -3.6318 9 14 5.3826 1.8012 -3.9817 10 1 5.2953 0.3664 -4.3543 11 1 5.5706 2.6196 -5.2065 12 1 6.5346 2.0059 -3.0672 13 16 2.4229 2.1164 1.4277 14 8 1.7258 1.4179 2.4503 15 8 2.2888 3.5144 1.2112 16 7 4.0345 1.8354 1.6845 17 6 5.0329 2.4308 0.7931 18 6 6.4018 2.4134 1.4765 19 7 6.7025 1.2093 2.2626 20 6 7.5644 3.0892 0.7468 21 6 6.9538 3.7461 1.9864 22 1 -0.3633 0.5900 0.8415 23 1 -0.3633 0.4337 -0.9315 24 1 -0.3633 -1.0237 0.0903 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 1.2956 1.8872 -1.9028 28 1 2.1799 3.1828 -1.0616 29 1 3.3364 3.7173 -4.4531 30 1 4.3174 1.2765 2.4251 31 1 4.7520 3.4597 0.5685 32 1 5.0817 1.8572 -0.1326 33 1 5.8667 0.8376 2.6886 34 1 7.1600 0.5118 1.6950 35 1 7.3541 3.5459 -0.2203 36 1 8.5523 2.6405 0.8500 37 1 7.5400 3.7296 2.9051 38 1 6.3422 4.6355 1.8350 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001577710941.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:17 Heat of formation + Delta-G solvation = -52.833489 kcal Electronic energy + Delta-G solvation = -21207.304523 eV Core-core repulsion = 18019.298757 eV Total energy + Delta-G solvation = -3188.005766 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.34577 -36.67212 -36.06853 -35.23047 -33.87464 -32.77408 -30.92491 -29.96336 -26.73388 -25.85074 -23.21074 -22.28362 -21.72333 -19.61721 -18.92211 -17.32990 -16.94580 -16.60000 -16.15337 -15.49048 -15.13197 -14.83887 -14.29959 -13.86447 -13.70940 -13.44794 -13.10376 -12.94003 -12.40113 -12.10322 -12.00777 -11.72219 -11.56389 -11.43672 -11.35885 -11.30541 -11.09914 -11.01490 -10.61581 -10.51810 -10.43018 -10.13385 -9.91659 -9.87032 -9.13186 -8.58548 -8.57211 -8.10577 -6.18151 -4.25430 1.26067 3.18679 3.25615 3.26465 3.47679 3.90052 4.13413 4.28369 4.36096 4.81489 5.06041 5.14834 5.15810 5.26634 5.40839 5.69525 5.73774 5.78814 5.82296 5.90788 6.05522 6.07463 6.22363 6.31660 6.32996 6.38966 6.64102 6.66321 7.03763 7.27556 7.32214 7.36461 7.43360 7.63495 7.78561 8.08669 8.78517 9.40099 10.89389 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.011161 B = 0.011046 C = 0.006489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.057667 B = 2534.211079 C = 4313.766865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.131 3.869 3 N -0.991 5.991 4 C 0.243 3.757 5 C -0.541 4.541 6 H 0.062 0.938 7 C 0.066 3.934 8 N -0.885 5.885 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.274 1.274 13 S 2.787 3.213 14 O -1.000 7.000 15 O -0.980 6.980 16 N -1.128 6.128 17 C 0.130 3.870 18 C 0.031 3.969 19 N -0.807 5.807 20 C -0.166 4.166 21 C -0.161 4.161 22 H 0.053 0.947 23 H 0.060 0.940 24 H 0.057 0.943 25 H 0.080 0.920 26 H 0.062 0.938 27 H 0.034 0.966 28 H 0.054 0.946 29 H 0.266 0.734 30 H 0.401 0.599 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.340 0.660 34 H 0.344 0.656 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.445 -4.660 7.544 9.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.004 3.996 3 N -0.833 5.833 4 C 0.121 3.879 5 C -0.580 4.580 6 H 0.080 0.920 7 C -0.138 4.138 8 N -0.523 5.523 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.199 1.199 13 S 2.795 3.205 14 O -0.984 6.984 15 O -0.963 6.963 16 N -0.889 5.889 17 C 0.002 3.998 18 C -0.064 4.064 19 N -0.338 5.338 20 C -0.204 4.204 21 C -0.199 4.199 22 H 0.073 0.927 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.098 0.902 26 H 0.080 0.920 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.235 0.765 31 H 0.105 0.895 32 H 0.113 0.887 33 H 0.156 0.844 34 H 0.157 0.843 35 H 0.120 0.880 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.236 -3.426 8.232 9.872 hybrid contribution 0.654 -1.247 -1.261 1.890 sum 4.890 -4.673 6.972 9.714 Atomic orbital electron populations 1.22187 0.96933 1.01309 1.02342 1.20961 0.93682 0.82877 1.02059 1.57729 1.78412 1.22929 1.24241 1.19207 0.97293 0.92367 0.79036 1.21459 1.07856 1.20146 1.08575 0.91971 1.24953 0.97050 0.94735 0.97015 1.69921 1.37995 1.23511 1.20875 0.86689 0.83633 0.78632 0.79254 1.20271 1.21183 1.19902 1.01676 0.72495 0.73670 0.72638 1.93547 1.71616 1.75562 1.57720 1.93575 1.85559 1.31268 1.85892 1.56033 1.25961 1.65851 1.41039 1.21451 0.85353 1.00460 0.92501 1.21516 0.93614 0.91221 1.00062 1.58698 1.30604 1.08579 1.35959 1.23116 0.96683 1.03441 0.97187 1.23219 1.03292 0.95413 0.97993 0.92748 0.92116 0.92379 0.90196 0.91961 0.94767 0.92762 0.92435 0.76523 0.89540 0.88696 0.84415 0.84274 0.88049 0.88468 0.88537 0.88485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.63 10.23 37.16 0.38 -2.25 16 2 C 0.13 2.21 6.04 -4.04 -0.02 2.19 16 3 N -0.99 -19.67 2.84 -115.67 -0.33 -20.00 16 4 C 0.24 5.77 5.47 -5.19 -0.03 5.74 16 5 C -0.54 -13.21 7.90 -34.44 -0.27 -13.49 16 6 H 0.06 1.45 6.88 -52.48 -0.36 1.09 16 7 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -24.31 13.29 55.43 0.74 -23.57 16 9 Si 0.89 19.60 29.54 -169.99 -5.02 14.58 16 10 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 13 S 2.79 54.06 6.12 -107.50 -0.66 53.40 16 14 O -1.00 -20.03 17.06 -57.17 -0.98 -21.00 16 15 O -0.98 -22.49 16.05 -57.17 -0.92 -23.41 16 16 N -1.13 -18.09 5.99 -10.62 -0.06 -18.16 16 17 C 0.13 2.19 6.33 -4.04 -0.03 2.16 16 18 C 0.03 0.44 3.03 -131.59 -0.40 0.04 16 19 N -0.81 -9.75 9.76 0.75 0.01 -9.75 16 20 C -0.17 -2.20 10.18 -26.73 -0.27 -2.47 16 21 C -0.16 -2.15 10.10 -26.73 -0.27 -2.42 16 22 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 23 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.08 1.35 8.08 -51.93 -0.42 0.93 16 26 H 0.06 0.94 7.56 -51.93 -0.39 0.55 16 27 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.05 1.43 6.86 -51.93 -0.36 1.08 16 29 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.40 5.35 6.35 -34.47 -0.22 5.13 16 31 H 0.09 1.62 7.44 -51.93 -0.39 1.23 16 32 H 0.10 1.75 5.73 -51.93 -0.30 1.45 16 33 H 0.34 3.84 6.45 -39.29 -0.25 3.59 16 34 H 0.34 3.73 9.08 -39.29 -0.36 3.38 16 35 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.10 1.31 8.08 -51.93 -0.42 0.89 16 LS Contribution 324.50 15.07 4.89 4.89 Total: -1.00 -29.88 324.50 -8.89 -38.78 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -5.56 Total: 13.14 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -1.01 Total: -8.89 kcal Atomic # 7 Polarization: -71.83 SS G_CDS: 0.35 Total: -71.48 kcal Atomic # 8 Polarization: -42.52 SS G_CDS: -1.89 Total: -44.41 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.58 kcal Atomic # 16 Polarization: 54.06 SS G_CDS: -0.66 Total: 53.40 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.88 -8.89 -38.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577710941.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.057 kcal (2) G-P(sol) polarization free energy of solvation -29.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds