Wall clock time and date at job start Mon Mar 30 2020 01:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47535 * 2 1 4 4 C 1.46500 * 120.00381 * 275.45638 * 3 2 1 5 5 C 1.50704 * 109.46832 * 280.35508 * 4 3 2 6 6 H 1.08005 * 119.99747 * 4.54396 * 5 4 3 7 7 C 1.37873 * 119.99924 * 184.54835 * 5 4 3 8 8 N 1.31516 * 120.00215 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99761 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47351 * 60.00260 * 9 7 5 11 11 H 1.48506 * 109.46886 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47238 * 300.00023 * 9 7 5 13 13 S 1.65600 * 119.99902 * 95.44931 * 3 2 1 14 14 O 1.42103 * 106.40248 * 337.60001 * 13 3 2 15 15 O 1.42104 * 106.40397 * 204.68178 * 13 3 2 16 16 N 1.65599 * 107.22093 * 91.14112 * 13 3 2 17 17 C 1.46493 * 119.99876 * 66.81046 * 16 13 3 18 18 C 1.53003 * 109.47138 * 161.69911 * 17 16 13 19 19 N 1.46908 * 115.55939 * 38.78001 * 18 17 16 20 20 C 1.53000 * 117.50253 * 184.46880 * 18 17 16 21 21 C 1.52998 * 60.00026 * 107.49000 * 20 18 17 22 22 H 1.09001 * 109.46837 * 305.03543 * 1 2 3 23 23 H 1.08992 * 109.47284 * 65.03226 * 1 2 3 24 24 H 1.08999 * 109.47092 * 185.03865 * 1 2 3 25 25 H 1.09002 * 109.46910 * 240.00197 * 2 1 3 26 26 H 1.08997 * 109.47631 * 120.00729 * 2 1 3 27 27 H 1.08998 * 109.47265 * 40.34939 * 4 3 2 28 28 H 1.08993 * 109.47649 * 160.35701 * 4 3 2 29 29 H 0.96998 * 120.00186 * 180.02562 * 8 7 5 30 30 H 0.97003 * 119.99768 * 246.81580 * 16 13 3 31 31 H 1.09000 * 109.47194 * 41.69921 * 17 16 13 32 32 H 1.09001 * 109.47515 * 281.69872 * 17 16 13 33 33 H 1.00901 * 110.99726 * 326.56185 * 19 18 17 34 34 H 1.00898 * 110.99892 * 90.51829 * 19 18 17 35 35 H 1.08997 * 117.49318 * 359.97438 * 20 18 17 36 36 H 1.08997 * 117.49822 * 214.98348 * 20 18 17 37 37 H 1.08995 * 117.50032 * 107.49035 * 21 20 18 38 38 H 1.08996 * 117.49899 * 252.48873 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1489 2.1121 -1.2629 5 6 3.4203 1.6943 -1.9560 6 1 4.0289 0.9059 -1.5383 7 6 3.8064 2.3186 -3.1230 8 7 3.0649 3.2783 -3.6318 9 14 5.3826 1.8012 -3.9817 10 1 5.2953 0.3664 -4.3543 11 1 5.5706 2.6196 -5.2065 12 1 6.5346 2.0059 -3.0672 13 16 2.4229 2.1164 1.4277 14 8 1.7258 1.4179 2.4503 15 8 2.2888 3.5144 1.2112 16 7 4.0345 1.8354 1.6845 17 6 5.0329 2.4308 0.7931 18 6 6.4018 2.4134 1.4765 19 7 6.7025 1.2093 2.2626 20 6 7.5644 3.0892 0.7468 21 6 6.9538 3.7461 1.9864 22 1 -0.3633 0.5900 0.8415 23 1 -0.3633 0.4337 -0.9315 24 1 -0.3633 -1.0237 0.0903 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 1.2956 1.8872 -1.9028 28 1 2.1799 3.1828 -1.0616 29 1 3.3364 3.7173 -4.4531 30 1 4.3174 1.2765 2.4251 31 1 4.7520 3.4597 0.5685 32 1 5.0817 1.8572 -0.1326 33 1 5.8667 0.8376 2.6886 34 1 7.1600 0.5118 1.6950 35 1 7.3541 3.5459 -0.2203 36 1 8.5523 2.6405 0.8500 37 1 7.5400 3.7296 2.9051 38 1 6.3422 4.6355 1.8350 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001577710941.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:16 Heat of formation + Delta-G solvation = -76.486795 kcal Electronic energy + Delta-G solvation = -21208.330207 eV Core-core repulsion = 18019.298757 eV Total energy + Delta-G solvation = -3189.031450 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.49276 -38.32883 -37.68900 -36.91969 -35.21502 -34.65918 -31.94161 -31.51479 -28.53350 -27.21811 -24.95252 -23.35823 -23.25448 -20.80730 -20.42148 -18.83608 -18.58998 -18.37668 -17.59722 -17.00393 -16.51106 -16.15952 -15.85246 -15.23917 -14.97194 -14.87020 -14.67388 -14.42396 -13.80682 -13.74978 -13.59140 -13.32353 -13.19876 -13.05371 -12.91654 -12.72428 -12.67704 -12.33647 -12.26872 -12.09139 -11.77676 -11.66410 -11.57814 -11.07473 -10.55577 -10.48644 -9.79408 -9.66557 -8.14334 -6.27918 -0.32637 1.46357 1.46946 1.54401 1.96471 2.43919 2.54656 2.85145 3.17730 3.28707 3.44413 3.73792 3.94588 4.04518 4.11140 4.38517 4.43105 4.51273 4.69360 4.76673 4.79697 4.87790 4.96677 4.99891 5.05033 5.15642 5.28280 5.30045 5.40611 5.52651 5.77607 5.82419 6.01245 6.12654 6.28037 6.47737 6.83223 7.41781 8.93511 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.011161 B = 0.011046 C = 0.006489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.057667 B = 2534.211079 C = 4313.766865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.121 3.879 3 N -0.994 5.994 4 C 0.258 3.742 5 C -0.535 4.535 6 H 0.076 0.924 7 C 0.014 3.986 8 N -0.928 5.928 9 Si 0.953 3.047 10 H -0.270 1.270 11 H -0.293 1.293 12 H -0.257 1.257 13 S 2.802 3.198 14 O -1.003 7.003 15 O -1.019 7.019 16 N -1.111 6.111 17 C 0.133 3.867 18 C 0.024 3.976 19 N -0.798 5.798 20 C -0.159 4.159 21 C -0.160 4.160 22 H 0.044 0.956 23 H 0.048 0.952 24 H 0.091 0.909 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.015 0.985 28 H 0.020 0.980 29 H 0.264 0.736 30 H 0.416 0.584 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.345 0.655 34 H 0.353 0.647 35 H 0.092 0.908 36 H 0.117 0.883 37 H 0.110 0.890 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.190 -6.560 8.429 12.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.004 4.004 3 N -0.835 5.835 4 C 0.134 3.866 5 C -0.574 4.574 6 H 0.094 0.906 7 C -0.185 4.185 8 N -0.567 5.567 9 Si 0.778 3.222 10 H -0.195 1.195 11 H -0.219 1.219 12 H -0.181 1.181 13 S 2.810 3.190 14 O -0.987 6.987 15 O -1.002 7.002 16 N -0.875 5.875 17 C 0.005 3.995 18 C -0.071 4.071 19 N -0.331 5.331 20 C -0.198 4.198 21 C -0.198 4.198 22 H 0.063 0.937 23 H 0.067 0.933 24 H 0.110 0.890 25 H 0.100 0.900 26 H 0.105 0.895 27 H 0.033 0.967 28 H 0.038 0.962 29 H 0.073 0.927 30 H 0.254 0.746 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.161 0.839 34 H 0.168 0.832 35 H 0.110 0.890 36 H 0.135 0.865 37 H 0.128 0.872 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.977 -5.371 9.156 12.182 hybrid contribution 0.066 -0.682 -1.472 1.624 sum 6.043 -6.053 7.683 11.497 Atomic orbital electron populations 1.22185 0.96026 1.03170 1.01266 1.21256 0.94590 0.81231 1.03352 1.57619 1.79091 1.24052 1.22778 1.18758 0.96636 0.90934 0.80228 1.21707 1.07735 1.19777 1.08189 0.90647 1.25772 1.00135 0.94707 0.97923 1.70068 1.40051 1.25135 1.21453 0.85684 0.80300 0.78230 0.78003 1.19491 1.21912 1.18124 1.01075 0.73042 0.72678 0.72249 1.93535 1.72260 1.75334 1.57591 1.93528 1.86399 1.33928 1.86355 1.55620 1.24590 1.65901 1.41438 1.21334 0.87042 0.98629 0.92502 1.21391 0.92289 0.92573 1.00856 1.58710 1.30680 1.08268 1.35443 1.23172 0.97104 1.02833 0.96645 1.23264 1.03153 0.94660 0.98737 0.93723 0.93327 0.89033 0.89964 0.89502 0.96666 0.96168 0.92672 0.74633 0.92109 0.90103 0.83912 0.83211 0.88998 0.86503 0.87180 0.89273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.02 10.23 71.98 0.74 -4.28 16 2 C 0.12 3.92 6.04 86.38 0.52 4.44 16 3 N -0.99 -39.37 2.84 -519.86 -1.48 -40.85 16 4 C 0.26 12.58 5.47 85.63 0.47 13.05 16 5 C -0.54 -26.15 7.90 25.60 0.20 -25.94 16 6 H 0.08 3.43 6.88 -2.91 -0.02 3.41 16 7 C 0.01 0.74 5.46 84.65 0.46 1.20 16 8 N -0.93 -52.17 13.29 21.45 0.28 -51.89 16 9 Si 0.95 39.72 29.54 68.60 2.03 41.75 16 10 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 11 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 13 S 2.80 108.09 6.12 -56.49 -0.35 107.74 16 14 O -1.00 -38.88 17.06 -128.00 -2.18 -41.06 16 15 O -1.02 -48.04 16.05 -128.00 -2.05 -50.09 16 16 N -1.11 -34.40 5.99 -187.50 -1.12 -35.53 16 17 C 0.13 4.40 6.33 86.38 0.55 4.94 16 18 C 0.02 0.64 3.03 3.53 0.01 0.65 16 19 N -0.80 -16.98 9.76 -151.54 -1.48 -18.46 16 20 C -0.16 -3.88 10.18 30.59 0.31 -3.56 16 21 C -0.16 -4.00 10.10 30.59 0.31 -3.69 16 22 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 25 H 0.08 2.63 8.08 -2.39 -0.02 2.61 16 26 H 0.09 2.39 7.56 -2.39 -0.02 2.37 16 27 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.02 1.13 6.86 -2.39 -0.02 1.11 16 29 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 30 H 0.42 10.22 6.35 -96.74 -0.61 9.61 16 31 H 0.06 2.33 7.44 -2.39 -0.02 2.31 16 32 H 0.08 2.90 5.73 -2.39 -0.01 2.89 16 33 H 0.34 6.77 6.45 -89.69 -0.58 6.19 16 34 H 0.35 6.51 9.08 -89.70 -0.81 5.69 16 35 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.09 2.36 8.08 -2.39 -0.02 2.34 16 Total: -1.00 -64.13 324.50 -3.70 -67.83 By element: Atomic # 1 Polarization: 34.68 SS G_CDS: -0.92 Total: 33.76 kcal Atomic # 6 Polarization: -16.77 SS G_CDS: 3.57 Total: -13.20 kcal Atomic # 7 Polarization: -142.94 SS G_CDS: -3.79 Total: -146.73 kcal Atomic # 8 Polarization: -86.92 SS G_CDS: -4.24 Total: -91.16 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.75 kcal Atomic # 16 Polarization: 108.09 SS G_CDS: -0.35 Total: 107.74 kcal Total: -64.13 -3.70 -67.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577710941.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.661 kcal (2) G-P(sol) polarization free energy of solvation -64.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds