Wall clock time and date at job start Mon Mar 30 2020 01:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47359 * 2 1 4 4 C 1.46500 * 120.00024 * 275.00215 * 3 2 1 5 5 C 1.50701 * 109.46758 * 280.03784 * 4 3 2 6 6 H 1.07999 * 120.00270 * 4.20608 * 5 4 3 7 7 C 1.37879 * 119.99806 * 184.21437 * 5 4 3 8 8 N 1.31513 * 119.99837 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99956 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.46881 * 90.00414 * 9 7 5 11 11 H 1.48502 * 109.47309 * 210.00085 * 9 7 5 12 12 H 1.48500 * 109.47535 * 330.00923 * 9 7 5 13 13 S 1.65604 * 119.99872 * 94.99508 * 3 2 1 14 14 O 1.42097 * 106.40464 * 330.35162 * 13 3 2 15 15 O 1.42102 * 106.40063 * 197.43515 * 13 3 2 16 16 N 1.65600 * 107.21605 * 83.89343 * 13 3 2 17 17 C 1.46501 * 119.99734 * 65.27579 * 16 13 3 18 18 C 1.53003 * 109.47071 * 165.49873 * 17 16 13 19 19 H 1.09003 * 112.78785 * 56.29632 * 18 17 16 20 20 C 1.53503 * 113.47707 * 187.11308 * 18 17 16 21 21 C 1.53511 * 83.57942 * 140.78571 * 20 18 17 22 22 N 1.47478 * 87.92939 * 333.97483 * 21 20 18 23 23 H 1.08994 * 109.47190 * 300.00248 * 1 2 3 24 24 H 1.09002 * 109.46928 * 60.00052 * 1 2 3 25 25 H 1.08997 * 109.47008 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47483 * 240.00136 * 2 1 3 27 27 H 1.09002 * 109.46928 * 119.99948 * 2 1 3 28 28 H 1.09002 * 109.46810 * 40.03335 * 4 3 2 29 29 H 1.09000 * 109.47407 * 160.03714 * 4 3 2 30 30 H 0.97005 * 119.99502 * 179.97438 * 8 7 5 31 31 H 0.96992 * 120.00028 * 245.26906 * 16 13 3 32 32 H 1.08992 * 109.47491 * 45.49415 * 17 16 13 33 33 H 1.09004 * 109.46688 * 285.49006 * 17 16 13 34 34 H 1.09002 * 114.17238 * 254.43141 * 20 18 17 35 35 H 1.09004 * 114.17490 * 27.13430 * 20 18 17 36 36 H 1.08996 * 113.47911 * 219.21000 * 21 20 18 37 37 H 1.09002 * 113.52905 * 88.74742 * 21 20 18 38 38 H 1.00898 * 111.00273 * 138.70087 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 -1.2639 5 6 3.4386 1.6948 -1.9425 6 1 4.0496 0.9145 -1.5133 7 6 3.8301 2.3126 -3.1114 8 7 4.9472 1.9511 -3.7039 9 14 2.7732 3.6619 -3.8541 10 1 3.1952 4.9774 -3.3095 11 1 2.9357 3.6621 -5.3302 12 1 1.3485 3.4191 -3.5129 13 16 2.4121 2.1202 1.4287 14 8 1.5808 1.5388 2.4237 15 8 2.4460 3.5157 1.1627 16 7 3.9642 1.6767 1.7985 17 6 5.0717 2.1002 0.9380 18 6 6.3979 1.8828 1.6694 19 1 6.5361 0.8519 1.9955 20 6 7.6099 2.4554 0.9214 21 6 8.0712 2.8577 2.3292 22 7 6.6524 2.8740 2.7314 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.3126 1.8776 -1.9116 29 1 2.1820 3.1803 -1.0657 30 1 5.2224 2.3854 -4.5264 31 1 4.1401 1.1368 2.5847 32 1 4.9597 3.1568 0.6951 33 1 5.0630 1.5133 0.0195 34 1 8.2369 1.7019 0.4447 35 1 7.3756 3.2979 0.2707 36 1 8.5446 3.8387 2.3673 37 1 8.6562 2.0876 2.8321 38 1 6.5308 2.4641 3.6453 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001577711125.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:19 Heat of formation + Delta-G solvation = -44.280603 kcal Electronic energy + Delta-G solvation = -21069.537210 eV Core-core repulsion = 17881.902325 eV Total energy + Delta-G solvation = -3187.634885 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.54035 -36.65501 -36.15144 -35.20765 -34.32779 -32.64082 -30.20235 -28.00653 -27.19067 -27.01886 -22.93311 -22.68941 -21.51619 -19.67776 -18.61999 -17.29170 -17.07625 -16.81715 -16.67887 -15.83213 -15.14507 -14.53498 -14.21992 -13.94239 -13.82393 -13.35087 -12.77055 -12.53602 -12.35756 -12.05845 -11.95539 -11.86066 -11.79980 -11.56659 -11.41961 -11.33792 -11.12494 -11.01465 -10.95254 -10.52648 -10.37879 -10.28957 -10.14527 -9.62646 -8.92947 -8.84954 -8.64867 -8.10232 -6.17525 -4.17299 1.29576 3.27568 3.34423 3.39057 3.53184 4.09621 4.29819 4.35790 4.63392 4.89640 5.06459 5.16125 5.27146 5.36438 5.40166 5.52159 5.70280 5.73480 5.77025 5.83961 6.01645 6.03084 6.17636 6.26647 6.29665 6.45983 6.55602 6.62238 6.66929 6.89412 7.13041 7.30668 7.32268 7.51367 7.59815 8.39933 8.83979 9.44201 10.94110 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.012832 B = 0.009093 C = 0.006126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.573965 B = 3078.547052 C = 4569.815068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.132 3.868 3 N -0.988 5.988 4 C 0.212 3.788 5 C -0.540 4.540 6 H 0.083 0.917 7 C 0.078 3.922 8 N -0.892 5.892 9 Si 0.867 3.133 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.264 1.264 13 S 2.788 3.212 14 O -1.001 7.001 15 O -0.980 6.980 16 N -1.126 6.126 17 C 0.135 3.865 18 C 0.027 3.973 19 H 0.075 0.925 20 C -0.134 4.134 21 C -0.003 4.003 22 N -0.620 5.620 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.083 0.917 27 H 0.062 0.938 28 H 0.033 0.967 29 H 0.045 0.955 30 H 0.265 0.735 31 H 0.403 0.597 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.060 0.940 38 H 0.314 0.686 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.048 -3.359 9.295 10.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.005 3.995 3 N -0.828 5.828 4 C 0.089 3.911 5 C -0.578 4.578 6 H 0.101 0.899 7 C -0.125 4.125 8 N -0.530 5.530 9 Si 0.694 3.306 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.189 1.189 13 S 2.796 3.204 14 O -0.985 6.985 15 O -0.964 6.964 16 N -0.885 5.885 17 C 0.009 3.991 18 C -0.086 4.086 19 H 0.093 0.907 20 C -0.173 4.173 21 C -0.133 4.133 22 N -0.244 5.244 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.101 0.899 27 H 0.081 0.919 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.234 0.766 32 H 0.102 0.898 33 H 0.115 0.885 34 H 0.096 0.904 35 H 0.119 0.881 36 H 0.101 0.899 37 H 0.078 0.922 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.202 -1.834 9.219 9.476 hybrid contribution 0.352 -0.747 -0.089 0.830 sum 1.554 -2.581 9.130 9.614 Atomic orbital electron populations 1.22221 0.96977 1.01471 1.02366 1.20971 0.93530 0.82594 1.02381 1.57541 1.78928 1.23050 1.23310 1.19583 0.98146 0.92351 0.81048 1.21414 1.05923 1.22039 1.08470 0.89929 1.24825 0.94739 0.96471 0.96511 1.69882 1.22084 1.42161 1.18864 0.86974 0.81773 0.83276 0.78558 1.19653 1.21140 1.18904 1.01636 0.72621 0.73639 0.72505 1.93546 1.65962 1.79661 1.59329 1.93566 1.86650 1.30987 1.85187 1.55820 1.25187 1.69916 1.37539 1.21451 0.82864 1.02084 0.92696 1.23406 0.96252 0.95123 0.93785 0.90684 1.23161 0.96095 1.01893 0.96127 1.23495 0.91830 1.01605 0.96393 1.67417 1.11776 1.39787 1.05435 0.92433 0.92283 0.92279 0.89869 0.91940 0.94869 0.93687 0.92517 0.76556 0.89796 0.88515 0.90445 0.88126 0.89930 0.92160 0.87422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.60 10.24 37.16 0.38 -2.22 16 2 C 0.13 2.21 6.02 -4.04 -0.02 2.19 16 3 N -0.99 -19.52 2.84 -115.66 -0.33 -19.84 16 4 C 0.21 4.86 4.53 -5.19 -0.02 4.83 16 5 C -0.54 -13.64 9.04 -34.44 -0.31 -13.95 16 6 H 0.08 2.17 6.71 -52.49 -0.35 1.82 16 7 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 8 N -0.89 -24.99 13.96 55.43 0.77 -24.22 16 9 Si 0.87 20.58 27.39 -169.99 -4.66 15.93 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 12 H -0.26 -6.05 6.66 56.52 0.38 -5.67 16 13 S 2.79 54.47 6.07 -107.50 -0.65 53.82 16 14 O -1.00 -20.12 17.17 -57.17 -0.98 -21.10 16 15 O -0.98 -22.60 16.02 -57.17 -0.92 -23.52 16 16 N -1.13 -18.40 6.06 -10.61 -0.06 -18.46 16 17 C 0.14 2.34 6.22 -4.04 -0.03 2.32 16 18 C 0.03 0.36 4.05 -71.44 -0.29 0.08 16 19 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 20 C -0.13 -1.76 8.01 -26.21 -0.21 -1.97 16 21 C 0.00 -0.03 8.62 -7.55 -0.07 -0.10 16 22 N -0.62 -8.20 8.50 -115.45 -0.98 -9.18 16 23 H 0.06 0.91 7.97 -51.93 -0.41 0.50 16 24 H 0.06 0.91 8.10 -51.93 -0.42 0.49 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.08 1.41 8.09 -51.93 -0.42 0.99 16 27 H 0.06 0.93 7.78 -51.93 -0.40 0.53 16 28 H 0.03 0.75 7.45 -51.93 -0.39 0.36 16 29 H 0.05 1.09 5.97 -51.93 -0.31 0.78 16 30 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.40 5.41 8.65 -34.47 -0.30 5.11 16 32 H 0.08 1.67 7.75 -51.93 -0.40 1.27 16 33 H 0.10 1.87 5.84 -51.93 -0.30 1.57 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.10 1.48 8.12 -51.93 -0.42 1.06 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.31 3.51 8.91 -39.29 -0.35 3.16 16 LS Contribution 321.42 15.07 4.84 4.84 Total: -1.00 -31.03 321.42 -9.38 -40.41 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -5.76 Total: 8.18 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -0.67 Total: -6.86 kcal Atomic # 7 Polarization: -71.10 SS G_CDS: -0.60 Total: -71.70 kcal Atomic # 8 Polarization: -42.72 SS G_CDS: -1.90 Total: -44.62 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.66 Total: 15.93 kcal Atomic # 16 Polarization: 54.47 SS G_CDS: -0.65 Total: 53.82 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.03 -9.38 -40.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577711125.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.867 kcal (2) G-P(sol) polarization free energy of solvation -31.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds