Wall clock time and date at job start Mon Mar 30 2020 02:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40072 * 126.06977 * 2 1 4 4 C 1.30866 * 108.36068 * 179.77551 * 3 2 1 5 5 C 1.40219 * 108.36222 * 0.38416 * 4 3 2 6 6 N 1.40798 * 126.06838 * 179.87412 * 5 4 3 7 7 C 1.35708 * 107.86467 * 359.61345 * 5 4 3 8 8 C 1.50707 * 126.22184 * 180.25049 * 7 5 4 9 9 C 1.53004 * 109.46977 * 269.97030 * 8 7 5 10 10 C 1.50697 * 109.46914 * 179.97438 * 9 8 7 11 11 O 1.21290 * 120.00354 * 0.02562 * 10 9 8 12 12 N 1.34773 * 119.99979 * 179.97438 * 10 9 8 13 13 C 1.37100 * 120.00093 * 180.02562 * 12 10 9 14 14 H 1.08001 * 120.00030 * 20.22168 * 13 12 10 15 15 C 1.38950 * 119.99912 * 200.21978 * 13 12 10 16 16 N 1.31414 * 119.99897 * 21.42630 * 15 13 12 17 17 Si 1.86797 * 120.00188 * 201.42423 * 15 13 12 18 18 H 1.48500 * 109.47201 * 60.00058 * 17 15 13 19 19 H 1.48498 * 109.47701 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47139 * 300.00553 * 17 15 13 21 21 C 1.46500 * 120.00018 * 0.02562 * 12 10 9 22 22 C 1.47206 * 109.47159 * 83.94739 * 21 12 10 23 23 N 6.77071 * 109.62242 * 224.91830 * 2 1 3 24 24 H 1.09002 * 109.47060 * 269.97152 * 1 2 3 25 25 H 1.08997 * 109.47285 * 29.97697 * 1 2 3 26 26 H 1.09000 * 109.46938 * 149.97426 * 1 2 3 27 27 H 1.07999 * 125.81900 * 180.24492 * 4 3 2 28 28 H 0.97003 * 119.99946 * 179.68680 * 6 5 4 29 29 H 0.96999 * 119.99617 * 359.41702 * 6 5 4 30 30 H 1.08998 * 109.47360 * 29.97364 * 8 7 5 31 31 H 1.08999 * 109.46673 * 149.97604 * 8 7 5 32 32 H 1.08998 * 109.47348 * 300.00341 * 9 8 7 33 33 H 1.09002 * 109.46629 * 60.00328 * 9 8 7 34 34 H 0.97006 * 119.99634 * 179.97438 * 16 15 13 35 35 H 1.09001 * 109.47464 * 203.94726 * 21 12 10 36 36 H 1.09000 * 109.46851 * 323.94847 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2897 1.1322 0.0000 4 6 3.5363 0.7341 0.0049 5 6 3.5523 -0.6680 -0.0008 6 7 4.6998 -1.4839 -0.0006 7 6 2.2655 -1.0990 -0.0005 8 6 1.8073 -2.5347 -0.0002 9 6 1.6513 -3.0205 -1.4427 10 6 1.1936 -4.4563 -1.4424 11 8 1.0098 -5.0341 -0.3919 12 7 0.9876 -5.0981 -2.6094 13 6 0.5708 -6.4042 -2.6092 14 1 0.0995 -6.8205 -1.7311 15 6 0.7546 -7.1924 -3.7387 16 7 1.6662 -6.8652 -4.6269 17 14 -0.2939 -8.7169 -3.9946 18 1 -1.7257 -8.3281 -4.0577 19 1 0.0962 -9.3786 -5.2655 20 1 -0.0857 -9.6565 -2.8636 21 6 1.2090 -4.4002 -3.8783 22 6 2.6366 -4.4653 -4.2315 23 7 3.7387 -4.5160 -4.5031 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3634 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 4.4048 1.3761 0.0099 28 1 4.6083 -2.4496 -0.0002 29 1 5.5818 -1.0802 -0.0049 30 1 2.5449 -3.1515 0.5131 31 1 0.8492 -2.6101 0.5141 32 1 0.9137 -2.4037 -1.9561 33 1 2.6093 -2.9450 -1.9570 34 1 1.7948 -7.4157 -5.4152 35 1 0.6188 -4.8750 -4.6621 36 1 0.9070 -3.3578 -3.7771 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580006687.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:08 Heat of formation + Delta-G solvation = 79.277376 kcal Electronic energy + Delta-G solvation = -21291.458877 eV Core-core repulsion = 18006.030668 eV Total energy + Delta-G solvation = -3285.428209 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.01196 -38.89801 -35.87905 -34.52731 -34.38977 -33.64385 -31.96246 -31.33633 -28.42710 -27.43046 -25.94878 -25.37152 -23.40275 -20.96194 -19.61602 -19.00008 -17.92390 -16.99301 -16.47268 -16.34083 -15.70012 -15.34336 -14.96693 -14.65851 -14.24484 -14.12578 -13.91888 -13.10690 -12.99173 -12.91717 -12.57372 -12.52783 -12.03089 -11.98045 -11.59106 -11.56831 -11.30419 -11.14593 -10.89594 -10.60543 -10.52644 -10.47426 -10.44144 -10.31669 -9.28215 -9.07895 -8.62549 -8.06338 -6.96557 -6.53323 -4.04553 2.00282 2.64966 3.09255 3.10043 3.19850 3.21953 3.52658 3.77620 3.96350 4.09439 4.25197 4.64524 4.79221 4.85382 5.03759 5.17801 5.20634 5.23040 5.36018 5.45651 5.47716 5.59709 5.76923 5.81511 5.99489 6.11321 6.35413 6.38254 6.43734 6.58864 7.17033 7.43959 7.78500 7.83139 7.87576 8.17323 8.24226 8.72963 8.96582 9.16131 9.70137 10.52769 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.025859 B = 0.004653 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.532279 B = 6016.569637 C = 6456.234899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.369 5.369 3 N -0.284 5.284 4 C 0.003 3.997 5 C 0.062 3.938 6 N -0.875 5.875 7 C 0.009 3.991 8 C -0.024 4.024 9 C -0.129 4.129 10 C 0.456 3.544 11 O -0.574 6.574 12 N -0.442 5.442 13 C -0.317 4.317 14 H 0.107 0.893 15 C 0.033 3.967 16 N -0.875 5.875 17 Si 0.927 3.073 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.273 1.273 21 C 0.223 3.777 22 C 0.244 3.756 23 N -0.470 5.470 24 H 0.070 0.930 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.177 0.823 28 H 0.397 0.603 29 H 0.394 0.606 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.274 0.726 35 H 0.123 0.877 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.957 11.640 4.210 12.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.157 5.157 3 N -0.107 5.107 4 C -0.184 4.184 5 C -0.047 4.047 6 N -0.422 5.422 7 C -0.120 4.120 8 C -0.064 4.064 9 C -0.170 4.170 10 C 0.245 3.755 11 O -0.457 6.457 12 N -0.162 5.162 13 C -0.444 4.444 14 H 0.125 0.875 15 C -0.171 4.171 16 N -0.514 5.514 17 Si 0.753 3.247 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.198 1.198 21 C 0.095 3.905 22 C -0.074 4.074 23 N -0.150 5.150 24 H 0.088 0.912 25 H 0.104 0.896 26 H 0.107 0.893 27 H 0.194 0.806 28 H 0.225 0.775 29 H 0.222 0.778 30 H 0.105 0.895 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.141 0.859 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.373 12.247 4.148 13.003 hybrid contribution 0.131 -1.741 -0.382 1.787 sum -1.243 10.506 3.766 11.230 Atomic orbital electron populations 1.21770 0.74323 1.04304 1.03065 1.48002 1.05854 1.02688 1.59203 1.77137 1.01006 1.08875 1.23656 1.23414 0.95526 0.93115 1.06355 1.17409 0.87349 0.90361 1.09604 1.41550 1.03860 1.07227 1.89577 1.20422 0.89622 0.90474 1.11448 1.19713 1.02884 0.87104 0.96653 1.21602 1.02553 0.95342 0.97538 1.20131 0.82718 0.88425 0.84272 1.90546 1.55423 1.69035 1.30669 1.43623 1.58456 1.11833 1.02320 1.19644 1.36728 0.86126 1.01889 0.87510 1.25295 0.95898 0.99271 0.96619 1.69842 1.28340 1.40557 1.12626 0.85982 0.80104 0.80862 0.77743 1.19696 1.21032 1.19800 1.18673 0.85042 0.96617 0.90194 1.29265 0.95112 0.90342 0.92674 1.80900 1.13469 1.11625 1.09011 0.91158 0.89631 0.89340 0.80597 0.77467 0.77831 0.89504 0.90259 0.90323 0.90028 0.91560 0.85896 0.89883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.06 11.13 59.85 0.67 1.73 16 2 N -0.37 -5.06 4.04 -63.54 -0.26 -5.31 16 3 N -0.28 -4.13 12.57 30.70 0.39 -3.75 16 4 C 0.00 0.05 12.03 -17.22 -0.21 -0.16 16 5 C 0.06 0.86 7.22 -83.90 -0.61 0.26 16 6 N -0.88 -10.56 9.19 32.30 0.30 -10.26 16 7 C 0.01 0.14 6.23 -81.66 -0.51 -0.37 16 8 C -0.02 -0.36 4.36 -27.88 -0.12 -0.49 16 9 C -0.13 -2.11 4.29 -27.88 -0.12 -2.23 16 10 C 0.46 9.72 7.56 -10.99 -0.08 9.63 16 11 O -0.57 -14.12 15.65 5.55 0.09 -14.03 16 12 N -0.44 -9.89 2.60 -117.93 -0.31 -10.20 16 13 C -0.32 -7.91 9.27 -14.93 -0.14 -8.05 16 14 H 0.11 2.81 7.43 -52.49 -0.39 2.42 16 15 C 0.03 0.80 4.84 -17.47 -0.08 0.72 16 16 N -0.88 -21.79 9.58 55.50 0.53 -21.25 16 17 Si 0.93 19.22 29.60 -169.99 -5.03 14.18 16 18 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 19 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 20 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 21 C 0.22 4.26 4.91 -6.83 -0.03 4.23 16 22 C 0.24 5.29 12.82 -20.75 -0.27 5.03 16 23 N -0.47 -11.01 18.54 42.16 0.78 -10.23 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.09 0.80 7.70 -51.93 -0.40 0.40 16 27 H 0.18 1.77 8.06 -52.49 -0.42 1.34 16 28 H 0.40 4.97 8.21 -40.82 -0.34 4.63 16 29 H 0.39 3.81 8.96 -40.82 -0.37 3.45 16 30 H 0.09 1.39 7.56 -51.93 -0.39 1.00 16 31 H 0.08 1.18 7.72 -51.93 -0.40 0.78 16 32 H 0.08 1.10 7.42 -51.93 -0.39 0.72 16 33 H 0.08 1.39 7.49 -51.93 -0.39 1.00 16 34 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 35 H 0.12 2.41 6.63 -51.93 -0.34 2.06 16 36 H 0.08 1.22 6.69 -51.93 -0.35 0.87 16 LS Contribution 316.23 15.07 4.77 4.77 Total: -1.00 -31.90 316.23 -4.40 -36.30 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -4.15 Total: 9.49 kcal Atomic # 6 Polarization: 11.79 SS G_CDS: -1.50 Total: 10.29 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: 1.43 Total: -61.00 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: 0.09 Total: -14.03 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.90 -4.40 -36.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580006687.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.582 kcal (2) G-P(sol) polarization free energy of solvation -31.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds