Wall clock time and date at job start Mon Mar 30 2020 01:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46520 * 2 1 4 4 C 1.50704 * 109.47160 * 240.00207 * 2 1 3 5 5 H 1.07990 * 119.99737 * 239.99733 * 4 2 1 6 6 C 1.37874 * 119.99843 * 59.99868 * 4 2 1 7 7 N 1.31520 * 120.00256 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00012 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47119 * 90.00145 * 8 6 4 10 10 H 1.48501 * 109.47523 * 210.00143 * 8 6 4 11 11 H 1.48496 * 109.46941 * 330.00203 * 8 6 4 12 12 N 1.46495 * 109.47144 * 120.00132 * 2 1 3 13 13 S 1.65603 * 120.00231 * 263.85293 * 12 2 1 14 14 O 1.42102 * 106.40050 * 48.34900 * 13 12 2 15 15 O 1.42097 * 106.40506 * 181.26235 * 13 12 2 16 16 N 1.65599 * 107.21831 * 294.80887 * 13 12 2 17 17 C 1.47080 * 120.87805 * 275.77793 * 16 13 12 18 18 C 1.53695 * 108.27676 * 128.75594 * 17 16 13 19 19 N 1.46901 * 109.26038 * 54.07905 * 18 17 16 20 20 C 1.46894 * 111.00535 * 172.60981 * 19 18 17 21 21 C 1.46899 * 111.26884 * 296.76027 * 19 18 17 22 22 C 1.47083 * 120.88170 * 96.05270 * 16 13 12 23 23 H 1.09006 * 109.46910 * 173.72413 * 1 2 3 24 24 H 1.08996 * 109.47272 * 293.72152 * 1 2 3 25 25 H 1.08996 * 109.47300 * 53.72677 * 1 2 3 26 26 H 0.97001 * 120.00164 * 179.97438 * 7 6 4 27 27 H 0.97003 * 120.00084 * 83.57828 * 12 2 1 28 28 H 1.08996 * 109.62777 * 248.51882 * 17 16 13 29 29 H 1.08996 * 109.63079 * 9.10574 * 17 16 13 30 30 H 1.09007 * 109.64757 * 294.07570 * 18 17 16 31 31 H 1.08995 * 109.44569 * 173.95827 * 18 17 16 32 32 H 1.08991 * 109.47724 * 184.30283 * 20 19 18 33 33 H 1.09002 * 109.46822 * 304.30699 * 20 19 18 34 34 H 1.09001 * 109.46981 * 64.30000 * 20 19 18 35 35 H 1.09004 * 109.49572 * 303.14029 * 21 19 18 36 36 H 1.08999 * 109.52088 * 183.07532 * 21 19 18 37 37 H 1.09000 * 109.62723 * 350.89890 * 22 16 13 38 38 H 1.08997 * 109.62327 * 111.47967 * 22 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 1.3448 -2.1614 -4.4125 10 1 2.4873 -0.1400 -5.1121 11 1 3.6308 -1.7564 -3.7120 12 7 2.0183 -0.6906 1.1961 13 16 2.4392 0.1795 2.5409 14 8 1.3705 1.0839 2.7842 15 8 2.8939 -0.7628 3.5024 16 7 3.7515 1.1044 2.1354 17 6 5.1127 0.5502 2.1937 18 6 5.8038 0.8268 0.8491 19 7 5.7310 2.2640 0.5535 20 6 6.5294 2.5985 -0.6333 21 6 4.3391 2.7052 0.3931 22 6 3.5874 2.5037 1.7131 23 1 -0.3633 -1.0216 -0.1123 24 1 -0.3633 0.4134 0.9408 25 1 -0.3634 0.6080 -0.8285 26 1 0.7087 1.1614 -3.4844 27 1 2.0914 -1.6579 1.2018 28 1 5.6686 1.0288 2.9998 29 1 5.0632 -0.5248 2.3671 30 1 5.3042 0.2671 0.0582 31 1 6.8480 0.5200 0.9079 32 1 6.5203 3.6778 -0.7850 33 1 7.5555 2.2607 -0.4879 34 1 6.1050 2.1050 -1.5076 35 1 3.8599 2.1194 -0.3914 36 1 4.3206 3.7607 0.1214 37 1 2.5291 2.7209 1.5687 38 1 3.9996 3.1664 2.4740 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001654107302.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:49 Heat of formation + Delta-G solvation = -70.018038 kcal Electronic energy + Delta-G solvation = -21629.447823 eV Core-core repulsion = 18440.696879 eV Total energy + Delta-G solvation = -3188.750944 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.59848 -36.74085 -35.41269 -35.27519 -34.30097 -32.21477 -30.90210 -28.27718 -27.77522 -25.25852 -23.70857 -23.57074 -20.96954 -20.46778 -18.59088 -17.68405 -17.10512 -16.22119 -15.60671 -15.01941 -14.89705 -14.74886 -14.63795 -14.21947 -13.89525 -13.49574 -12.73046 -12.53353 -12.35282 -12.01730 -11.90269 -11.74905 -11.67874 -11.55175 -11.50390 -11.21820 -11.04740 -11.00453 -10.88024 -10.62072 -10.55311 -10.31969 -10.16140 -9.24123 -8.85906 -8.68383 -8.31390 -8.09015 -6.19588 -4.27192 1.22235 3.17711 3.25528 3.26556 3.44286 4.08052 4.19855 4.28752 4.86161 4.95363 5.12195 5.17429 5.36036 5.45331 5.57429 5.61648 5.72340 5.75500 5.83237 5.96104 5.98156 6.15392 6.26641 6.34563 6.41943 6.78224 6.89932 7.00632 7.07318 7.20092 7.20314 7.54566 7.67205 7.81762 7.98806 8.23573 8.76372 9.39175 10.86103 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.014773 B = 0.009217 C = 0.006746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.854604 B = 3037.148898 C = 4149.421020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.279 3.721 3 H 0.039 0.961 4 C -0.524 4.524 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.896 3.104 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.275 1.275 12 N -1.113 6.113 13 S 2.784 3.216 14 O -0.984 6.984 15 O -1.002 7.002 16 N -1.007 6.007 17 C 0.136 3.864 18 C 0.037 3.963 19 N -0.541 5.541 20 C 0.026 3.974 21 C 0.036 3.964 22 C 0.131 3.869 23 H 0.032 0.968 24 H 0.023 0.977 25 H 0.087 0.913 26 H 0.264 0.736 27 H 0.405 0.595 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.052 0.948 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.029 0.971 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.557 2.554 4.506 10.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.175 3.825 3 H 0.057 0.943 4 C -0.564 4.564 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.523 5.523 8 Si 0.724 3.276 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.200 1.200 12 N -0.875 5.875 13 S 2.792 3.208 14 O -0.967 6.967 15 O -0.986 6.986 16 N -0.846 5.846 17 C 0.010 3.990 18 C -0.092 4.092 19 N -0.266 5.266 20 C -0.123 4.123 21 C -0.093 4.093 22 C 0.005 3.995 23 H 0.051 0.949 24 H 0.042 0.958 25 H 0.105 0.895 26 H 0.074 0.926 27 H 0.238 0.762 28 H 0.090 0.910 29 H 0.103 0.897 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.047 0.953 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.113 0.887 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.208 3.130 5.628 10.432 hybrid contribution 0.208 -1.282 -2.142 2.505 sum 8.416 1.848 3.485 9.294 Atomic orbital electron populations 1.22217 0.98341 1.00595 1.00336 1.18433 0.91203 0.91941 0.80964 0.94318 1.21272 1.31960 1.13092 0.90043 0.92026 1.24900 0.94890 0.94990 0.98945 1.69894 1.36016 1.22537 1.23857 0.86533 0.79216 0.79418 0.82427 1.20537 1.21164 1.19989 1.55943 1.81016 1.18446 1.32070 1.01775 0.72927 0.72826 0.73276 1.93575 1.52705 1.65586 1.84839 1.93540 1.82326 1.62933 1.59803 1.58170 1.20175 1.22310 1.83971 1.21422 0.82043 0.98455 0.97123 1.22581 1.00472 0.88584 0.97583 1.61933 1.11389 1.16134 1.37099 1.22328 0.97543 1.01178 0.91203 1.22532 0.88026 1.01018 0.97764 1.21446 1.01104 0.81335 0.95649 0.94852 0.95824 0.89462 0.92615 0.76222 0.90989 0.89659 0.92974 0.90352 0.91600 0.91779 0.95258 0.92202 0.90156 0.88684 0.91163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.71 9.20 37.16 0.34 -3.37 16 2 C 0.28 6.51 2.79 -69.08 -0.19 6.32 16 3 H 0.04 0.95 7.19 -51.93 -0.37 0.58 16 4 C -0.52 -13.10 8.76 -34.44 -0.30 -13.40 16 5 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 6 C 0.07 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -23.38 11.39 55.43 0.63 -22.75 16 8 Si 0.90 19.97 29.54 -169.99 -5.02 14.95 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 12 N -1.11 -22.38 5.51 -5.88 -0.03 -22.41 16 13 S 2.78 53.36 6.04 -107.50 -0.65 52.71 16 14 O -0.98 -21.34 16.07 -57.18 -0.92 -22.26 16 15 O -1.00 -20.31 17.12 -57.18 -0.98 -21.29 16 16 N -1.01 -16.70 3.38 -112.97 -0.38 -17.08 16 17 C 0.14 1.94 6.54 -3.36 -0.02 1.92 16 18 C 0.04 0.52 5.64 -3.46 -0.02 0.50 16 19 N -0.54 -7.59 4.88 -242.31 -1.18 -8.77 16 20 C 0.03 0.32 9.58 60.06 0.58 0.89 16 21 C 0.04 0.55 5.62 -3.70 -0.02 0.53 16 22 C 0.13 2.04 6.23 -3.60 -0.02 2.02 16 23 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.02 0.53 7.71 -51.93 -0.40 0.13 16 25 H 0.09 2.23 6.26 -51.93 -0.33 1.91 16 26 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 27 H 0.41 7.54 8.84 -34.47 -0.30 7.23 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.09 1.18 7.39 -51.93 -0.38 0.79 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.08 0.91 8.06 -51.93 -0.42 0.49 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 34 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 1.11 7.70 -51.93 -0.40 0.71 16 36 H 0.08 1.08 8.11 -51.93 -0.42 0.66 16 37 H 0.09 1.59 7.03 -51.93 -0.37 1.22 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 316.25 15.07 4.77 4.77 Total: -1.00 -29.70 316.25 -9.42 -39.12 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -5.89 Total: 6.04 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: 0.24 Total: -3.02 kcal Atomic # 7 Polarization: -70.05 SS G_CDS: -0.97 Total: -71.01 kcal Atomic # 8 Polarization: -41.66 SS G_CDS: -1.90 Total: -43.55 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Atomic # 16 Polarization: 53.36 SS G_CDS: -0.65 Total: 52.71 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.70 -9.42 -39.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654107302.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.899 kcal (2) G-P(sol) polarization free energy of solvation -29.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds