Wall clock time and date at job start Mon Mar 30 2020 01:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46520 * 2 1 4 4 C 1.50704 * 109.47160 * 240.00207 * 2 1 3 5 5 H 1.07990 * 119.99737 * 239.99733 * 4 2 1 6 6 C 1.37874 * 119.99843 * 59.99868 * 4 2 1 7 7 N 1.31520 * 120.00256 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00012 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47119 * 90.00145 * 8 6 4 10 10 H 1.48501 * 109.47523 * 210.00143 * 8 6 4 11 11 H 1.48496 * 109.46941 * 330.00203 * 8 6 4 12 12 N 1.46495 * 109.47144 * 120.00132 * 2 1 3 13 13 S 1.65603 * 120.00231 * 263.85293 * 12 2 1 14 14 O 1.42102 * 106.40050 * 48.34900 * 13 12 2 15 15 O 1.42097 * 106.40506 * 181.26235 * 13 12 2 16 16 N 1.65599 * 107.21831 * 294.80887 * 13 12 2 17 17 C 1.47080 * 120.87805 * 275.77793 * 16 13 12 18 18 C 1.53695 * 108.27676 * 128.75594 * 17 16 13 19 19 N 1.46901 * 109.26038 * 54.07905 * 18 17 16 20 20 C 1.46894 * 111.00535 * 172.60981 * 19 18 17 21 21 C 1.46899 * 111.26884 * 296.76027 * 19 18 17 22 22 C 1.47083 * 120.88170 * 96.05270 * 16 13 12 23 23 H 1.09006 * 109.46910 * 173.72413 * 1 2 3 24 24 H 1.08996 * 109.47272 * 293.72152 * 1 2 3 25 25 H 1.08996 * 109.47300 * 53.72677 * 1 2 3 26 26 H 0.97001 * 120.00164 * 179.97438 * 7 6 4 27 27 H 0.97003 * 120.00084 * 83.57828 * 12 2 1 28 28 H 1.08996 * 109.62777 * 248.51882 * 17 16 13 29 29 H 1.08996 * 109.63079 * 9.10574 * 17 16 13 30 30 H 1.09007 * 109.64757 * 294.07570 * 18 17 16 31 31 H 1.08995 * 109.44569 * 173.95827 * 18 17 16 32 32 H 1.08991 * 109.47724 * 184.30283 * 20 19 18 33 33 H 1.09002 * 109.46822 * 304.30699 * 20 19 18 34 34 H 1.09001 * 109.46981 * 64.30000 * 20 19 18 35 35 H 1.09004 * 109.49572 * 303.14029 * 21 19 18 36 36 H 1.08999 * 109.52088 * 183.07532 * 21 19 18 37 37 H 1.09000 * 109.62723 * 350.89890 * 22 16 13 38 38 H 1.08997 * 109.62327 * 111.47967 * 22 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 1.3448 -2.1614 -4.4125 10 1 2.4873 -0.1400 -5.1121 11 1 3.6308 -1.7564 -3.7120 12 7 2.0183 -0.6906 1.1961 13 16 2.4392 0.1795 2.5409 14 8 1.3705 1.0839 2.7842 15 8 2.8939 -0.7628 3.5024 16 7 3.7515 1.1044 2.1354 17 6 5.1127 0.5502 2.1937 18 6 5.8038 0.8268 0.8491 19 7 5.7310 2.2640 0.5535 20 6 6.5294 2.5985 -0.6333 21 6 4.3391 2.7052 0.3931 22 6 3.5874 2.5037 1.7131 23 1 -0.3633 -1.0216 -0.1123 24 1 -0.3633 0.4134 0.9408 25 1 -0.3634 0.6080 -0.8285 26 1 0.7087 1.1614 -3.4844 27 1 2.0914 -1.6579 1.2018 28 1 5.6686 1.0288 2.9998 29 1 5.0632 -0.5248 2.3671 30 1 5.3042 0.2671 0.0582 31 1 6.8480 0.5200 0.9079 32 1 6.5203 3.6778 -0.7850 33 1 7.5555 2.2607 -0.4879 34 1 6.1050 2.1050 -1.5076 35 1 3.8599 2.1194 -0.3914 36 1 4.3206 3.7607 0.1214 37 1 2.5291 2.7209 1.5687 38 1 3.9996 3.1664 2.4740 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001654107302.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:48 Heat of formation + Delta-G solvation = -93.513631 kcal Electronic energy + Delta-G solvation = -21630.466668 eV Core-core repulsion = 18440.696879 eV Total energy + Delta-G solvation = -3189.769789 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.78476 -38.37212 -37.22622 -36.91521 -35.51361 -34.10595 -32.09676 -30.12655 -28.92209 -27.24196 -24.83506 -24.76888 -22.84460 -21.76707 -20.06091 -19.29362 -18.65373 -17.95073 -17.25039 -16.70255 -16.07353 -15.93825 -15.87329 -15.69053 -15.24856 -15.02694 -14.53851 -14.12148 -13.76781 -13.54676 -13.42198 -13.29007 -13.09055 -13.06410 -13.02523 -12.85634 -12.72580 -12.40816 -12.27753 -12.19942 -12.03883 -12.02687 -11.80155 -11.11089 -10.61791 -10.19639 -10.05650 -9.27195 -8.14942 -6.28169 -0.31534 1.40909 1.43760 1.51410 1.96135 2.41280 2.61694 3.01001 3.15018 3.39203 3.68642 4.07200 4.18774 4.26779 4.36675 4.48449 4.53777 4.67109 4.70510 4.72369 4.77178 4.87870 4.98970 5.04012 5.05822 5.08047 5.16207 5.18507 5.55131 5.60037 5.73904 5.98639 6.04308 6.10690 6.12057 6.40876 6.82058 7.41094 8.90351 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.014773 B = 0.009217 C = 0.006746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.854604 B = 3037.148898 C = 4149.421020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.286 3.714 3 H 0.025 0.975 4 C -0.533 4.533 5 H 0.063 0.937 6 C 0.023 3.977 7 N -0.910 5.910 8 Si 0.955 3.045 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.269 1.269 12 N -1.113 6.113 13 S 2.799 3.201 14 O -1.010 7.010 15 O -1.010 7.010 16 N -1.006 6.006 17 C 0.129 3.871 18 C 0.039 3.961 19 N -0.537 5.537 20 C 0.026 3.974 21 C 0.042 3.958 22 C 0.128 3.872 23 H 0.034 0.966 24 H 0.025 0.975 25 H 0.068 0.932 26 H 0.264 0.736 27 H 0.412 0.588 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.024 0.976 31 H 0.109 0.891 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.010 0.990 35 H 0.020 0.980 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.425 2.491 4.692 11.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.180 3.820 3 H 0.043 0.957 4 C -0.573 4.573 5 H 0.081 0.919 6 C -0.178 4.178 7 N -0.549 5.549 8 Si 0.781 3.219 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.194 1.194 12 N -0.874 5.874 13 S 2.808 3.192 14 O -0.994 6.994 15 O -0.994 6.994 16 N -0.847 5.847 17 C 0.004 3.996 18 C -0.090 4.090 19 N -0.262 5.262 20 C -0.122 4.122 21 C -0.088 4.088 22 C 0.002 3.998 23 H 0.053 0.947 24 H 0.044 0.956 25 H 0.086 0.914 26 H 0.073 0.927 27 H 0.245 0.755 28 H 0.113 0.887 29 H 0.108 0.892 30 H 0.042 0.958 31 H 0.127 0.873 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.029 0.971 35 H 0.038 0.962 36 H 0.117 0.883 37 H 0.097 0.903 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 10.083 3.046 5.824 12.036 hybrid contribution -0.328 -1.234 -2.162 2.511 sum 9.755 1.812 3.662 10.576 Atomic orbital electron populations 1.22131 0.98930 1.00206 0.99615 1.18151 0.90664 0.91439 0.81701 0.95693 1.21510 1.31839 1.13129 0.90795 0.91876 1.25583 0.95091 0.95592 1.01493 1.70004 1.36919 1.23631 1.24354 0.85615 0.78808 0.78289 0.79221 1.20436 1.21082 1.19357 1.55806 1.81402 1.18941 1.31265 1.01176 0.72839 0.72363 0.72818 1.93535 1.54481 1.66153 1.85226 1.93525 1.82471 1.63420 1.59958 1.57995 1.20473 1.22455 1.83775 1.21701 0.80776 0.98985 0.98148 1.22613 1.01839 0.88260 0.96338 1.62009 1.10347 1.16032 1.37771 1.22413 0.98134 1.01967 0.89714 1.22438 0.88638 1.01443 0.96240 1.21558 1.00504 0.81091 0.96612 0.94700 0.95562 0.91372 0.92651 0.75470 0.88705 0.89230 0.95798 0.87328 0.90274 0.89577 0.97095 0.96176 0.88334 0.90339 0.88588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.25 9.20 71.98 0.66 -6.59 16 2 C 0.29 13.53 2.79 44.25 0.12 13.66 16 3 H 0.03 1.27 7.19 -2.39 -0.02 1.25 16 4 C -0.53 -26.76 8.76 25.60 0.22 -26.54 16 5 H 0.06 3.09 7.81 -2.92 -0.02 3.06 16 6 C 0.02 1.18 5.30 84.65 0.45 1.63 16 7 N -0.91 -48.72 11.39 21.45 0.24 -48.47 16 8 Si 0.95 40.79 29.54 68.60 2.03 42.81 16 9 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 10 H -0.29 -12.07 7.11 99.48 0.71 -11.37 16 11 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 12 N -1.11 -44.80 5.51 -172.52 -0.95 -45.75 16 13 S 2.80 106.23 6.04 -56.49 -0.34 105.89 16 14 O -1.01 -43.95 16.07 -128.00 -2.06 -46.01 16 15 O -1.01 -39.83 17.12 -128.00 -2.19 -42.02 16 16 N -1.01 -32.37 3.38 -511.34 -1.73 -34.10 16 17 C 0.13 3.42 6.54 86.50 0.57 3.98 16 18 C 0.04 1.01 5.64 86.54 0.49 1.50 16 19 N -0.54 -14.00 4.88 -920.55 -4.49 -18.49 16 20 C 0.03 0.57 9.58 127.69 1.22 1.80 16 21 C 0.04 1.26 5.62 86.38 0.49 1.74 16 22 C 0.13 3.89 6.23 86.35 0.54 4.43 16 23 H 0.03 1.62 8.14 -2.38 -0.02 1.60 16 24 H 0.03 1.21 7.71 -2.39 -0.02 1.19 16 25 H 0.07 3.57 6.26 -2.39 -0.01 3.55 16 26 H 0.26 13.52 8.31 -92.71 -0.77 12.75 16 27 H 0.41 15.21 8.84 -96.74 -0.86 14.36 16 28 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.09 2.30 7.39 -2.39 -0.02 2.28 16 30 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.11 2.16 8.06 -2.39 -0.02 2.14 16 32 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.09 1.55 8.08 -2.39 -0.02 1.53 16 34 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 35 H 0.02 0.76 7.70 -2.38 -0.02 0.74 16 36 H 0.10 2.54 8.11 -2.39 -0.02 2.52 16 37 H 0.08 2.65 7.03 -2.39 -0.02 2.63 16 38 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -62.22 316.25 -4.54 -66.76 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: 0.19 Total: 23.76 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: 4.76 Total: -4.39 kcal Atomic # 7 Polarization: -139.88 SS G_CDS: -6.93 Total: -146.81 kcal Atomic # 8 Polarization: -83.78 SS G_CDS: -4.25 Total: -88.03 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.81 kcal Atomic # 16 Polarization: 106.23 SS G_CDS: -0.34 Total: 105.89 kcal Total: -62.22 -4.54 -66.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654107302.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.754 kcal (2) G-P(sol) polarization free energy of solvation -62.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds