Wall clock time and date at job start Mon Mar 30 2020 01:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47266 * 2 1 4 4 C 1.50696 * 109.47379 * 119.99683 * 2 1 3 5 5 H 1.08006 * 119.99968 * 95.23699 * 4 2 1 6 6 C 1.37876 * 120.00222 * 275.23916 * 4 2 1 7 7 N 1.31515 * 119.99889 * 355.15859 * 6 4 2 8 8 Si 1.86804 * 120.00124 * 175.15762 * 6 4 2 9 9 H 1.48504 * 109.47065 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46672 * 119.99737 * 8 6 4 11 11 H 1.48494 * 109.47298 * 240.00057 * 8 6 4 12 12 N 1.46499 * 109.47269 * 239.99802 * 2 1 3 13 13 S 1.65596 * 120.00157 * 94.99724 * 12 2 1 14 14 O 1.42095 * 106.40650 * 178.54036 * 13 12 2 15 15 O 1.42108 * 106.40423 * 311.46482 * 13 12 2 16 16 N 1.65602 * 107.21629 * 65.00050 * 13 12 2 17 17 C 1.47075 * 120.88264 * 269.71931 * 16 13 12 18 18 C 1.53699 * 108.27586 * 128.75421 * 17 16 13 19 19 N 1.46903 * 109.25327 * 54.08400 * 18 17 16 20 20 C 1.46899 * 111.00007 * 172.60641 * 19 18 17 21 21 C 1.46895 * 111.27352 * 296.75811 * 19 18 17 22 22 C 1.47081 * 120.88035 * 90.00157 * 16 13 12 23 23 H 1.09003 * 109.46865 * 175.00957 * 1 2 3 24 24 H 1.08998 * 109.47198 * 295.00628 * 1 2 3 25 25 H 1.08998 * 109.47134 * 55.00828 * 1 2 3 26 26 H 0.96999 * 120.00002 * 5.14774 * 7 6 4 27 27 H 0.97003 * 120.00007 * 275.00400 * 12 2 1 28 28 H 1.08994 * 109.63258 * 248.52267 * 17 16 13 29 29 H 1.09005 * 109.62910 * 9.10822 * 17 16 13 30 30 H 1.09000 * 109.64931 * 294.08268 * 18 17 16 31 31 H 1.09000 * 109.44772 * 173.95863 * 18 17 16 32 32 H 1.08996 * 109.47628 * 184.30092 * 20 19 18 33 33 H 1.09007 * 109.47256 * 304.30323 * 20 19 18 34 34 H 1.08999 * 109.47191 * 64.30054 * 20 19 18 35 35 H 1.08999 * 109.48914 * 303.14637 * 21 19 18 36 36 H 1.08999 * 109.51919 * 183.07655 * 21 19 18 37 37 H 1.08997 * 109.62820 * 350.89829 * 22 16 13 38 38 H 1.09004 * 109.62828 * 111.47751 * 22 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.2929 -1.7573 1.1811 6 6 2.1594 -0.0237 2.4193 7 7 1.9337 1.2714 2.4580 8 14 2.6520 -0.9329 3.9750 9 1 2.8474 -2.3723 3.6663 10 1 3.9188 -0.3635 4.5009 11 1 1.5823 -0.7855 4.9943 12 7 2.0183 -0.6906 -1.1961 13 16 2.4121 0.1770 -2.5505 14 8 2.8776 -0.7636 -3.5085 15 8 1.3246 1.0592 -2.7922 16 7 3.7096 1.1299 -2.1620 17 6 3.5169 2.4871 -1.6290 18 6 4.3489 2.6228 -0.3438 19 7 5.7436 2.2605 -0.6292 20 6 6.6076 2.5431 0.5248 21 6 5.8558 0.8543 -1.0389 22 6 5.0854 0.6438 -2.3467 23 1 -0.3633 -1.0238 -0.0894 24 1 -0.3633 0.4344 0.9313 25 1 -0.3633 0.5893 -0.8419 26 1 1.6060 1.7304 1.6689 27 1 2.1109 -1.6562 -1.1948 28 1 3.8503 3.2198 -2.3638 29 1 2.4624 2.6452 -1.4025 30 1 3.9501 1.9586 0.4228 31 1 4.3058 3.6532 0.0092 32 1 7.6450 2.3376 0.2610 33 1 6.5053 3.5909 0.8073 34 1 6.3136 1.9106 1.3624 35 1 5.4360 0.2147 -0.2625 36 1 6.9053 0.6017 -1.1902 37 1 5.0685 -0.4174 -2.5950 38 1 5.5667 1.2028 -3.1492 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001654107303.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:51 Heat of formation + Delta-G solvation = -74.684887 kcal Electronic energy + Delta-G solvation = -21799.727380 eV Core-core repulsion = 18610.774067 eV Total energy + Delta-G solvation = -3188.953313 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.59057 -36.83017 -35.68077 -35.34494 -34.29647 -32.25713 -30.89531 -28.44331 -27.75468 -24.86601 -23.68785 -23.56514 -21.30819 -20.46040 -18.65287 -17.75323 -17.38323 -16.69707 -15.63566 -14.90565 -14.73933 -14.64512 -14.49438 -13.92834 -13.90206 -13.68343 -13.26611 -12.57264 -12.37376 -12.03395 -11.94049 -11.82086 -11.73882 -11.58254 -11.53538 -11.32634 -10.99591 -10.92385 -10.87894 -10.79496 -10.57384 -10.39989 -10.27410 -9.13949 -8.85351 -8.52816 -8.34933 -8.05768 -6.56612 -4.30349 1.15935 3.30846 3.31666 3.39114 3.47414 4.06982 4.18457 4.34518 4.80876 4.92749 5.16831 5.19688 5.36595 5.46775 5.56217 5.64234 5.75290 5.78453 5.83687 5.97130 6.04198 6.12059 6.19008 6.25557 6.39772 6.48151 6.69091 6.72792 6.83164 7.21227 7.23511 7.24015 7.26935 7.70902 8.04870 8.26289 8.62819 9.39007 10.80037 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.014664 B = 0.009874 C = 0.007013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.024333 B = 2834.977751 C = 3991.669223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.259 3.741 3 H 0.042 0.958 4 C -0.596 4.596 5 H 0.056 0.944 6 C 0.026 3.974 7 N -0.904 5.904 8 Si 1.072 2.928 9 H -0.289 1.289 10 H -0.287 1.287 11 H -0.286 1.286 12 N -1.108 6.108 13 S 2.781 3.219 14 O -1.001 7.001 15 O -0.986 6.986 16 N -1.006 6.006 17 C 0.132 3.868 18 C 0.035 3.965 19 N -0.540 5.540 20 C 0.026 3.974 21 C 0.038 3.962 22 C 0.134 3.866 23 H 0.042 0.958 24 H 0.056 0.944 25 H 0.034 0.966 26 H 0.270 0.730 27 H 0.406 0.594 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.030 0.970 35 H 0.049 0.951 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.992 1.230 -4.747 8.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.154 3.846 3 H 0.060 0.940 4 C -0.636 4.636 5 H 0.075 0.925 6 C -0.180 4.180 7 N -0.540 5.540 8 Si 0.901 3.099 9 H -0.215 1.215 10 H -0.214 1.214 11 H -0.212 1.212 12 N -0.870 5.870 13 S 2.790 3.210 14 O -0.985 6.985 15 O -0.969 6.969 16 N -0.846 5.846 17 C 0.006 3.994 18 C -0.094 4.094 19 N -0.265 5.265 20 C -0.122 4.122 21 C -0.091 4.091 22 C 0.008 3.992 23 H 0.061 0.939 24 H 0.075 0.925 25 H 0.053 0.947 26 H 0.082 0.918 27 H 0.238 0.762 28 H 0.089 0.911 29 H 0.108 0.892 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.048 0.952 35 H 0.067 0.933 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.043 1.920 -4.414 8.531 hybrid contribution -0.411 -1.125 -0.400 1.263 sum 6.632 0.795 -4.814 8.233 Atomic orbital electron populations 1.22327 0.99064 1.00154 1.00046 1.18636 0.90421 0.92751 0.82810 0.94012 1.22097 1.48489 0.98513 0.94545 0.92531 1.25780 0.94672 0.95995 1.01522 1.70776 1.41685 1.08076 1.33445 0.83490 0.76795 0.74638 0.75023 1.21494 1.21391 1.21176 1.55986 1.81207 1.18651 1.31137 1.01882 0.72984 0.72854 0.73318 1.93537 1.82027 1.62805 1.60126 1.93572 1.51791 1.66725 1.84843 1.58134 1.19656 1.26030 1.80737 1.21531 1.00263 0.82632 0.94970 1.22629 0.87774 1.01798 0.97208 1.61941 1.08340 1.20434 1.35773 1.22322 0.96826 1.01265 0.91778 1.22479 1.00120 0.89215 0.97321 1.21364 0.81180 0.99556 0.97109 0.93864 0.92548 0.94734 0.91799 0.76164 0.91069 0.89208 0.91739 0.90181 0.91811 0.91576 0.95151 0.93253 0.90271 0.89461 0.90988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 9.50 37.16 0.35 -3.15 16 2 C 0.26 5.93 2.51 -69.09 -0.17 5.76 16 3 H 0.04 1.00 4.96 -51.93 -0.26 0.74 16 4 C -0.60 -14.93 8.56 -34.44 -0.29 -15.22 16 5 H 0.06 1.43 7.82 -52.48 -0.41 1.02 16 6 C 0.03 0.67 5.45 -17.82 -0.10 0.57 16 7 N -0.90 -24.19 13.63 55.43 0.76 -23.44 16 8 Si 1.07 23.33 29.91 -169.99 -5.08 18.25 16 9 H -0.29 -6.06 7.11 56.52 0.40 -5.65 16 10 H -0.29 -6.19 7.11 56.52 0.40 -5.78 16 11 H -0.29 -6.19 7.11 56.52 0.40 -5.78 16 12 N -1.11 -22.38 5.52 -5.88 -0.03 -22.42 16 13 S 2.78 53.81 6.06 -107.50 -0.65 53.16 16 14 O -1.00 -20.43 16.92 -57.17 -0.97 -21.40 16 15 O -0.99 -21.36 16.26 -57.17 -0.93 -22.29 16 16 N -1.01 -17.21 3.38 -112.97 -0.38 -17.59 16 17 C 0.13 2.17 5.97 -3.36 -0.02 2.15 16 18 C 0.04 0.58 5.64 -3.46 -0.02 0.56 16 19 N -0.54 -8.09 4.88 -242.31 -1.18 -9.28 16 20 C 0.03 0.35 9.58 60.06 0.58 0.93 16 21 C 0.04 0.56 5.62 -3.71 -0.02 0.54 16 22 C 0.13 1.99 6.53 -3.60 -0.02 1.96 16 23 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 24 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 25 H 0.03 0.74 7.73 -51.93 -0.40 0.34 16 26 H 0.27 7.19 6.66 -40.82 -0.27 6.92 16 27 H 0.41 7.64 8.83 -34.47 -0.30 7.34 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.09 1.56 6.67 -51.93 -0.35 1.21 16 30 H 0.06 1.31 7.75 -51.93 -0.40 0.91 16 31 H 0.08 1.21 8.06 -51.93 -0.42 0.79 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.82 8.08 -51.93 -0.42 0.40 16 34 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.08 0.96 8.11 -51.93 -0.42 0.53 16 37 H 0.09 1.25 7.22 -51.93 -0.37 0.87 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 316.09 15.07 4.76 4.76 Total: -1.00 -29.80 316.09 -9.21 -39.01 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -5.78 Total: 7.13 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: 0.28 Total: -5.91 kcal Atomic # 7 Polarization: -71.88 SS G_CDS: -0.84 Total: -72.72 kcal Atomic # 8 Polarization: -41.79 SS G_CDS: -1.90 Total: -43.69 kcal Atomic # 14 Polarization: 23.33 SS G_CDS: -5.08 Total: 18.25 kcal Atomic # 16 Polarization: 53.81 SS G_CDS: -0.65 Total: 53.16 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.80 -9.21 -39.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654107303.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.675 kcal (2) G-P(sol) polarization free energy of solvation -29.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds