Wall clock time and date at job start Mon Mar 30 2020 01:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47266 * 2 1 4 4 C 1.50696 * 109.47379 * 119.99683 * 2 1 3 5 5 H 1.08006 * 119.99968 * 95.23699 * 4 2 1 6 6 C 1.37876 * 120.00222 * 275.23916 * 4 2 1 7 7 N 1.31515 * 119.99889 * 355.15859 * 6 4 2 8 8 Si 1.86804 * 120.00124 * 175.15762 * 6 4 2 9 9 H 1.48504 * 109.47065 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46672 * 119.99737 * 8 6 4 11 11 H 1.48494 * 109.47298 * 240.00057 * 8 6 4 12 12 N 1.46499 * 109.47269 * 239.99802 * 2 1 3 13 13 S 1.65596 * 120.00157 * 94.99724 * 12 2 1 14 14 O 1.42095 * 106.40650 * 178.54036 * 13 12 2 15 15 O 1.42108 * 106.40423 * 311.46482 * 13 12 2 16 16 N 1.65602 * 107.21629 * 65.00050 * 13 12 2 17 17 C 1.47075 * 120.88264 * 269.71931 * 16 13 12 18 18 C 1.53699 * 108.27586 * 128.75421 * 17 16 13 19 19 N 1.46903 * 109.25327 * 54.08400 * 18 17 16 20 20 C 1.46899 * 111.00007 * 172.60641 * 19 18 17 21 21 C 1.46895 * 111.27352 * 296.75811 * 19 18 17 22 22 C 1.47081 * 120.88035 * 90.00157 * 16 13 12 23 23 H 1.09003 * 109.46865 * 175.00957 * 1 2 3 24 24 H 1.08998 * 109.47198 * 295.00628 * 1 2 3 25 25 H 1.08998 * 109.47134 * 55.00828 * 1 2 3 26 26 H 0.96999 * 120.00002 * 5.14774 * 7 6 4 27 27 H 0.97003 * 120.00007 * 275.00400 * 12 2 1 28 28 H 1.08994 * 109.63258 * 248.52267 * 17 16 13 29 29 H 1.09005 * 109.62910 * 9.10822 * 17 16 13 30 30 H 1.09000 * 109.64931 * 294.08268 * 18 17 16 31 31 H 1.09000 * 109.44772 * 173.95863 * 18 17 16 32 32 H 1.08996 * 109.47628 * 184.30092 * 20 19 18 33 33 H 1.09007 * 109.47256 * 304.30323 * 20 19 18 34 34 H 1.08999 * 109.47191 * 64.30054 * 20 19 18 35 35 H 1.08999 * 109.48914 * 303.14637 * 21 19 18 36 36 H 1.08999 * 109.51919 * 183.07655 * 21 19 18 37 37 H 1.08997 * 109.62820 * 350.89829 * 22 16 13 38 38 H 1.09004 * 109.62828 * 111.47751 * 22 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.2929 -1.7573 1.1811 6 6 2.1594 -0.0237 2.4193 7 7 1.9337 1.2714 2.4580 8 14 2.6520 -0.9329 3.9750 9 1 2.8474 -2.3723 3.6663 10 1 3.9188 -0.3635 4.5009 11 1 1.5823 -0.7855 4.9943 12 7 2.0183 -0.6906 -1.1961 13 16 2.4121 0.1770 -2.5505 14 8 2.8776 -0.7636 -3.5085 15 8 1.3246 1.0592 -2.7922 16 7 3.7096 1.1299 -2.1620 17 6 3.5169 2.4871 -1.6290 18 6 4.3489 2.6228 -0.3438 19 7 5.7436 2.2605 -0.6292 20 6 6.6076 2.5431 0.5248 21 6 5.8558 0.8543 -1.0389 22 6 5.0854 0.6438 -2.3467 23 1 -0.3633 -1.0238 -0.0894 24 1 -0.3633 0.4344 0.9313 25 1 -0.3633 0.5893 -0.8419 26 1 1.6060 1.7304 1.6689 27 1 2.1109 -1.6562 -1.1948 28 1 3.8503 3.2198 -2.3638 29 1 2.4624 2.6452 -1.4025 30 1 3.9501 1.9586 0.4228 31 1 4.3058 3.6532 0.0092 32 1 7.6450 2.3376 0.2610 33 1 6.5053 3.5909 0.8073 34 1 6.3136 1.9106 1.3624 35 1 5.4360 0.2147 -0.2625 36 1 6.9053 0.6017 -1.1902 37 1 5.0685 -0.4174 -2.5950 38 1 5.5667 1.2028 -3.1492 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001654107303.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:50 Heat of formation + Delta-G solvation = -98.291691 kcal Electronic energy + Delta-G solvation = -21800.751048 eV Core-core repulsion = 18610.774067 eV Total energy + Delta-G solvation = -3189.976981 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.84962 -38.47619 -37.48460 -36.99338 -35.57255 -34.13730 -32.15766 -30.24567 -28.97915 -26.83302 -24.89250 -24.82819 -23.15723 -21.82214 -20.14692 -19.47963 -18.95908 -18.35057 -17.17430 -16.18442 -16.13944 -15.98714 -15.83453 -15.63752 -15.35871 -15.28037 -14.94666 -14.14095 -13.86844 -13.69907 -13.49566 -13.29446 -13.22093 -13.14393 -13.08906 -12.78055 -12.68448 -12.58921 -12.27165 -12.25397 -12.07637 -11.96417 -11.87770 -10.93819 -10.49458 -10.22315 -10.10698 -9.32796 -8.59179 -6.33262 -0.39555 1.54510 1.60130 1.76471 1.87653 2.52676 2.54445 2.95801 3.19638 3.30028 3.61096 4.01116 4.12431 4.19690 4.29433 4.36561 4.41648 4.54687 4.61703 4.65881 4.69723 4.71900 4.82790 4.88334 4.94831 4.99850 5.01541 5.11905 5.37837 5.41364 5.51484 5.89321 5.98887 6.06359 6.19630 6.36428 6.60597 7.42362 8.77822 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.014664 B = 0.009874 C = 0.007013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.024333 B = 2834.977751 C = 3991.669223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.262 3.738 3 H 0.032 0.968 4 C -0.602 4.602 5 H 0.052 0.948 6 C -0.015 4.015 7 N -0.923 5.923 8 Si 1.111 2.889 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.283 1.283 12 N -1.109 6.109 13 S 2.797 3.203 14 O -1.008 7.008 15 O -1.009 7.009 16 N -1.006 6.006 17 C 0.131 3.869 18 C 0.043 3.957 19 N -0.535 5.535 20 C 0.027 3.973 21 C 0.040 3.960 22 C 0.127 3.873 23 H 0.051 0.949 24 H 0.042 0.958 25 H 0.037 0.963 26 H 0.262 0.738 27 H 0.412 0.588 28 H 0.097 0.903 29 H 0.074 0.926 30 H 0.021 0.979 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.008 0.992 35 H 0.019 0.981 36 H 0.112 0.888 37 H 0.092 0.908 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.517 1.114 -5.214 10.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.156 3.844 3 H 0.049 0.951 4 C -0.642 4.642 5 H 0.071 0.929 6 C -0.216 4.216 7 N -0.560 5.560 8 Si 0.935 3.065 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.870 5.870 13 S 2.806 3.194 14 O -0.992 6.992 15 O -0.993 6.993 16 N -0.847 5.847 17 C 0.005 3.995 18 C -0.087 4.087 19 N -0.259 5.259 20 C -0.121 4.121 21 C -0.090 4.090 22 C 0.002 3.998 23 H 0.070 0.930 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.072 0.928 27 H 0.245 0.755 28 H 0.115 0.885 29 H 0.092 0.908 30 H 0.039 0.961 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.094 0.906 34 H 0.027 0.973 35 H 0.038 0.962 36 H 0.130 0.870 37 H 0.110 0.890 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.568 1.785 -4.896 10.029 hybrid contribution -0.842 -1.076 -0.312 1.401 sum 7.726 0.710 -5.208 9.345 Atomic orbital electron populations 1.22254 0.98812 1.00613 0.99406 1.18439 0.90558 0.92271 0.83129 0.95062 1.22291 1.48115 0.98369 0.95433 0.92926 1.26881 0.94445 0.96062 1.04182 1.70861 1.43138 1.08841 1.33147 0.82974 0.76651 0.74457 0.72412 1.20057 1.20988 1.20896 1.55843 1.81576 1.19108 1.30494 1.01265 0.72861 0.72426 0.72836 1.93523 1.82163 1.63266 1.60249 1.93537 1.53397 1.67187 1.85179 1.57991 1.20140 1.25985 1.80561 1.21613 0.99553 0.82744 0.95564 1.22497 0.88769 1.01448 0.95998 1.62024 1.07240 1.20505 1.36172 1.22402 0.97776 1.01424 0.90506 1.22527 1.01762 0.88461 0.96204 1.21641 0.79835 1.00284 0.97990 0.92960 0.93941 0.94401 0.92769 0.75500 0.88482 0.90765 0.96092 0.88957 0.89171 0.90609 0.97347 0.96226 0.87039 0.88994 0.88552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.83 9.50 71.98 0.68 -6.15 16 2 C 0.26 12.14 2.51 44.24 0.11 12.26 16 3 H 0.03 1.54 4.96 -2.39 -0.01 1.53 16 4 C -0.60 -30.32 8.56 25.60 0.22 -30.10 16 5 H 0.05 2.64 7.82 -2.91 -0.02 2.62 16 6 C -0.01 -0.75 5.45 84.65 0.46 -0.29 16 7 N -0.92 -50.24 13.63 21.45 0.29 -49.95 16 8 Si 1.11 46.75 29.91 68.60 2.05 48.80 16 9 H -0.28 -10.88 7.11 99.48 0.71 -10.17 16 10 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 11 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 12 N -1.11 -44.71 5.52 -172.53 -0.95 -45.66 16 13 S 2.80 106.60 6.06 -56.49 -0.34 106.26 16 14 O -1.01 -39.87 16.92 -128.00 -2.17 -42.03 16 15 O -1.01 -43.48 16.26 -128.00 -2.08 -45.56 16 16 N -1.01 -33.34 3.38 -511.34 -1.73 -35.07 16 17 C 0.13 4.20 5.97 86.51 0.52 4.71 16 18 C 0.04 1.40 5.64 86.54 0.49 1.89 16 19 N -0.53 -15.07 4.88 -920.54 -4.49 -19.57 16 20 C 0.03 0.67 9.58 127.69 1.22 1.89 16 21 C 0.04 1.09 5.62 86.38 0.49 1.58 16 22 C 0.13 3.51 6.53 86.35 0.56 4.07 16 23 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 24 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.04 1.64 7.73 -2.39 -0.02 1.63 16 26 H 0.26 14.34 6.66 -92.71 -0.62 13.72 16 27 H 0.41 15.36 8.83 -96.75 -0.85 14.51 16 28 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 29 H 0.07 2.61 6.67 -2.38 -0.02 2.59 16 30 H 0.02 0.87 7.75 -2.39 -0.02 0.85 16 31 H 0.09 2.74 8.06 -2.39 -0.02 2.72 16 32 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.08 1.73 8.08 -2.38 -0.02 1.71 16 34 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 35 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.11 2.33 8.11 -2.39 -0.02 2.31 16 37 H 0.09 2.45 7.22 -2.39 -0.02 2.43 16 38 H 0.10 2.24 8.14 -2.38 -0.02 2.22 16 Total: -1.00 -62.59 316.09 -4.32 -66.90 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: 0.35 Total: 26.02 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: 4.75 Total: -10.14 kcal Atomic # 7 Polarization: -143.36 SS G_CDS: -6.88 Total: -150.25 kcal Atomic # 8 Polarization: -83.35 SS G_CDS: -4.25 Total: -87.59 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.05 Total: 48.80 kcal Atomic # 16 Polarization: 106.60 SS G_CDS: -0.34 Total: 106.26 kcal Total: -62.59 -4.32 -66.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654107303.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.389 kcal (2) G-P(sol) polarization free energy of solvation -62.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds