Wall clock time and date at job start Mon Mar 30 2020 02:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38548 * 119.85324 * 2 1 4 4 C 1.38051 * 120.38864 * 180.30236 * 3 2 1 5 5 C 1.38700 * 120.08557 * 359.44503 * 4 3 2 6 6 O 1.35659 * 120.15429 * 180.30277 * 5 4 3 7 7 C 1.40141 * 119.70303 * 0.27083 * 5 4 3 8 8 C 1.47531 * 120.19384 * 180.02562 * 7 5 4 9 9 O 1.21584 * 120.00404 * 328.45482 * 8 7 5 10 10 N 1.34782 * 119.99660 * 148.44916 * 8 7 5 11 11 C 1.46498 * 120.00173 * 7.51063 * 10 8 7 12 12 C 1.50695 * 109.47353 * 98.63637 * 11 10 8 13 13 H 1.07999 * 120.00359 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99776 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00335 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99727 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47288 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47039 * 119.99793 * 16 14 12 19 19 H 1.48503 * 109.46917 * 239.99831 * 16 14 12 20 20 C 1.46504 * 119.99952 * 187.50308 * 10 8 7 21 21 C 1.52992 * 109.46691 * 121.23331 * 20 10 8 22 22 C 1.52996 * 109.47059 * 241.23618 * 20 10 8 23 23 C 1.37784 * 119.84733 * 179.74439 * 2 1 3 24 24 H 1.09000 * 109.47138 * 270.25640 * 1 2 3 25 25 H 1.09007 * 109.47019 * 30.25281 * 1 2 3 26 26 H 1.08998 * 109.47332 * 150.25164 * 1 2 3 27 27 H 1.08008 * 119.80327 * 0.02562 * 3 2 1 28 28 H 1.08006 * 119.95446 * 179.71784 * 4 3 2 29 29 H 0.96695 * 114.00297 * 89.99343 * 6 5 4 30 30 H 1.08998 * 109.47246 * 218.64218 * 11 10 8 31 31 H 1.09006 * 109.47207 * 338.63785 * 11 10 8 32 32 H 0.96996 * 120.00056 * 180.02562 * 15 14 12 33 33 H 1.08997 * 109.47002 * 1.23543 * 20 10 8 34 34 H 1.09004 * 109.47371 * 60.00736 * 21 20 10 35 35 H 1.09007 * 109.47142 * 180.02562 * 21 20 10 36 36 H 1.08998 * 109.47835 * 299.99727 * 21 20 10 37 37 H 1.09001 * 109.47537 * 60.00180 * 22 20 10 38 38 H 1.08998 * 109.47044 * 180.02562 * 22 20 10 39 39 H 1.08997 * 109.47152 * 299.99832 * 22 20 10 40 40 H 1.08001 * 120.04366 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.2016 0.0000 4 6 3.5771 1.2145 -0.0063 5 6 4.2836 0.0210 -0.0010 6 8 5.6402 0.0321 -0.0010 7 6 3.5898 -1.1966 0.0049 8 6 4.3304 -2.4726 0.0111 9 8 5.4117 -2.5506 -0.5394 10 7 3.8084 -3.5517 0.6272 11 6 2.4393 -3.5078 1.1467 12 6 1.5068 -4.1637 0.1613 13 1 1.8950 -4.5728 -0.7597 14 6 0.1578 -4.2415 0.4356 15 7 -0.3151 -3.7437 1.5573 16 14 -0.9982 -5.0552 -0.7856 17 1 -0.2230 -5.5312 -1.9594 18 1 -1.6722 -6.2082 -0.1365 19 1 -2.0182 -4.0726 -1.2320 20 6 4.6101 -4.7688 0.7772 21 6 4.7423 -5.1124 2.2621 22 6 3.9246 -5.9243 0.0452 23 6 2.1928 -1.1951 0.0053 24 1 -0.3633 0.0046 1.0276 25 1 -0.3633 0.8878 -0.5178 26 1 -0.3634 -0.8922 -0.5099 27 1 1.6511 2.1338 0.0004 28 1 4.1076 2.1553 -0.0108 29 1 6.0335 0.0392 0.8823 30 1 2.3945 -4.0381 2.0979 31 1 2.1400 -2.4701 1.2948 32 1 -1.2640 -3.7988 1.7503 33 1 5.6005 -4.6061 0.3523 34 1 3.7518 -5.2752 2.6871 35 1 5.3391 -6.0177 2.3738 36 1 5.2306 -4.2892 2.7836 37 1 3.8304 -5.6794 -1.0127 38 1 4.5208 -6.8299 0.1572 39 1 2.9342 -6.0870 0.4701 40 1 1.6510 -2.1293 0.0099 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044414985.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:42 Heat of formation + Delta-G solvation = -39.929091 kcal Electronic energy + Delta-G solvation = -22704.713233 eV Core-core repulsion = 19485.363436 eV Total energy + Delta-G solvation = -3219.349797 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.10323 -38.25090 -36.67090 -35.60171 -33.29641 -31.98107 -31.24082 -29.83462 -27.58008 -26.59508 -25.79776 -23.62958 -22.93820 -21.74640 -20.21902 -18.58221 -17.52493 -16.69869 -16.58920 -15.62203 -15.31897 -14.89907 -14.55988 -14.14309 -13.82892 -13.42080 -13.35279 -13.11261 -12.89896 -12.44573 -12.39080 -12.28729 -11.74915 -11.50320 -11.43438 -11.28159 -11.18762 -11.03458 -11.00715 -10.74494 -10.50397 -10.42644 -9.94487 -9.74146 -9.61686 -8.93234 -8.74833 -8.25360 -7.96633 -7.65400 -6.29843 -4.37125 1.40084 1.76826 3.14368 3.24577 3.29204 3.50658 3.89618 4.17459 4.27665 4.62894 5.00008 5.20074 5.29392 5.41399 5.55551 5.70055 5.73896 5.86476 5.88211 6.07425 6.14800 6.17653 6.17786 6.23758 6.40238 6.48314 6.52214 6.59128 6.65755 6.76252 6.80145 6.90218 7.08040 7.12173 7.21053 7.39554 7.57597 7.67042 7.94237 8.05784 8.36522 8.72954 9.05381 9.29923 10.74291 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013225 B = 0.009251 C = 0.006031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.753353 B = 3026.049807 C = 4641.215290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.110 4.110 3 C -0.091 4.091 4 C -0.170 4.170 5 C 0.143 3.857 6 O -0.483 6.483 7 C -0.156 4.156 8 C 0.556 3.444 9 O -0.556 6.556 10 N -0.587 5.587 11 C 0.206 3.794 12 C -0.538 4.538 13 H 0.069 0.931 14 C 0.069 3.931 15 N -0.880 5.880 16 Si 0.890 3.110 17 H -0.270 1.270 18 H -0.282 1.282 19 H -0.280 1.280 20 C 0.139 3.861 21 C -0.158 4.158 22 C -0.156 4.156 23 C -0.078 4.078 24 H 0.070 0.930 25 H 0.055 0.945 26 H 0.071 0.929 27 H 0.120 0.880 28 H 0.124 0.876 29 H 0.382 0.618 30 H 0.035 0.965 31 H 0.065 0.935 32 H 0.267 0.733 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.049 0.951 37 H 0.051 0.949 38 H 0.045 0.955 39 H 0.083 0.917 40 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.911 5.031 1.643 6.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.110 4.110 3 C -0.109 4.109 4 C -0.188 4.188 5 C 0.097 3.903 6 O -0.292 6.292 7 C -0.160 4.160 8 C 0.345 3.655 9 O -0.436 6.436 10 N -0.318 5.318 11 C 0.087 3.913 12 C -0.576 4.576 13 H 0.087 0.913 14 C -0.136 4.136 15 N -0.517 5.517 16 Si 0.717 3.283 17 H -0.195 1.195 18 H -0.208 1.208 19 H -0.206 1.206 20 C 0.036 3.964 21 C -0.216 4.216 22 C -0.214 4.214 23 C -0.096 4.096 24 H 0.089 0.911 25 H 0.074 0.926 26 H 0.090 0.910 27 H 0.138 0.862 28 H 0.142 0.858 29 H 0.238 0.762 30 H 0.053 0.947 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.102 0.898 40 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 3.236 4.976 0.874 6.000 hybrid contribution -0.732 -0.383 -0.013 0.827 sum 2.504 4.592 0.861 5.301 Atomic orbital electron populations 1.20701 0.90848 1.02242 1.02493 1.19965 0.96607 0.92726 1.01739 1.21012 0.93425 0.97669 0.98823 1.21150 0.94439 0.97091 1.06147 1.18459 0.82855 0.91039 0.97976 1.84802 1.15626 1.96287 1.32464 1.20410 0.94564 0.93277 1.07745 1.18097 0.84912 0.83668 0.78835 1.90698 1.22594 1.84997 1.45345 1.48146 1.16234 1.11300 1.56071 1.20260 0.76052 0.99796 0.95199 1.21590 0.91887 1.38549 1.05603 0.91290 1.24967 0.98101 0.95088 0.95414 1.69939 1.14518 1.44176 1.23087 0.86547 0.80840 0.79471 0.81444 1.19470 1.20759 1.20613 1.20810 0.95330 0.85077 0.95212 1.22111 1.02424 1.00639 0.96394 1.22194 1.02385 0.96101 1.00723 1.23215 0.93019 1.02195 0.91121 0.91115 0.92559 0.90963 0.86174 0.85762 0.76221 0.94707 0.91753 0.92351 0.89820 0.91503 0.92358 0.93217 0.92966 0.93587 0.89790 0.78063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.69 10.00 36.01 0.36 -1.33 16 2 C -0.11 -1.96 5.87 -104.67 -0.61 -2.57 16 3 C -0.09 -1.40 9.68 -39.54 -0.38 -1.79 16 4 C -0.17 -2.69 9.98 -39.48 -0.39 -3.08 16 5 C 0.14 2.65 6.69 -38.70 -0.26 2.39 16 6 O -0.48 -8.56 12.04 -37.49 -0.45 -9.01 16 7 C -0.16 -3.28 5.57 -104.85 -0.58 -3.86 16 8 C 0.56 12.54 7.33 -12.47 -0.09 12.45 16 9 O -0.56 -13.63 15.16 -13.52 -0.20 -13.83 16 10 N -0.59 -12.60 2.44 -168.70 -0.41 -13.01 16 11 C 0.21 4.68 4.35 -5.20 -0.02 4.66 16 12 C -0.54 -12.93 5.56 -34.44 -0.19 -13.12 16 13 H 0.07 1.73 6.71 -52.49 -0.35 1.37 16 14 C 0.07 1.67 5.36 -17.82 -0.10 1.57 16 15 N -0.88 -21.97 13.29 55.43 0.74 -21.24 16 16 Si 0.89 19.33 29.54 -169.99 -5.02 14.30 16 17 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 18 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 19 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 20 C 0.14 2.66 3.24 -67.93 -0.22 2.44 16 21 C -0.16 -2.59 9.12 37.15 0.34 -2.25 16 22 C -0.16 -2.88 8.09 37.16 0.30 -2.58 16 23 C -0.08 -1.61 7.10 -39.20 -0.28 -1.89 16 24 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 26 H 0.07 1.26 8.08 -51.93 -0.42 0.84 16 27 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 28 H 0.12 1.63 8.06 -52.48 -0.42 1.20 16 29 H 0.38 4.98 9.06 45.56 0.41 5.39 16 30 H 0.03 0.83 6.44 -51.93 -0.33 0.50 16 31 H 0.07 1.52 4.01 -51.96 -0.21 1.31 16 32 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 33 H 0.08 1.65 6.93 -51.93 -0.36 1.29 16 34 H 0.07 1.16 6.70 -51.93 -0.35 0.82 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.05 1.02 7.87 -51.93 -0.41 0.61 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.08 1.68 6.42 -51.93 -0.33 1.35 16 40 H 0.20 4.60 3.24 -52.49 -0.17 4.43 16 LS Contribution 322.27 15.07 4.86 4.86 Total: -1.00 -28.34 322.27 -7.24 -35.59 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -4.61 Total: 11.29 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: -2.13 Total: -8.95 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: 0.32 Total: -34.25 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.66 Total: -22.85 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.02 Total: 14.30 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.34 -7.24 -35.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044414985.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.344 kcal (2) G-P(sol) polarization free energy of solvation -28.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds