Wall clock time and date at job start Mon Mar 30 2020 02:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38548 * 119.85324 * 2 1 4 4 C 1.38051 * 120.38864 * 180.30236 * 3 2 1 5 5 C 1.38700 * 120.08557 * 359.44503 * 4 3 2 6 6 O 1.35659 * 120.15429 * 180.30277 * 5 4 3 7 7 C 1.40141 * 119.70303 * 0.27083 * 5 4 3 8 8 C 1.47531 * 120.19384 * 180.02562 * 7 5 4 9 9 O 1.21584 * 120.00404 * 328.45482 * 8 7 5 10 10 N 1.34782 * 119.99660 * 148.44916 * 8 7 5 11 11 C 1.46498 * 120.00173 * 7.51063 * 10 8 7 12 12 C 1.50695 * 109.47353 * 98.63637 * 11 10 8 13 13 H 1.07999 * 120.00359 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99776 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00335 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99727 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47288 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47039 * 119.99793 * 16 14 12 19 19 H 1.48503 * 109.46917 * 239.99831 * 16 14 12 20 20 C 1.46504 * 119.99952 * 187.50308 * 10 8 7 21 21 C 1.52992 * 109.46691 * 121.23331 * 20 10 8 22 22 C 1.52996 * 109.47059 * 241.23618 * 20 10 8 23 23 C 1.37784 * 119.84733 * 179.74439 * 2 1 3 24 24 H 1.09000 * 109.47138 * 270.25640 * 1 2 3 25 25 H 1.09007 * 109.47019 * 30.25281 * 1 2 3 26 26 H 1.08998 * 109.47332 * 150.25164 * 1 2 3 27 27 H 1.08008 * 119.80327 * 0.02562 * 3 2 1 28 28 H 1.08006 * 119.95446 * 179.71784 * 4 3 2 29 29 H 0.96695 * 114.00297 * 89.99343 * 6 5 4 30 30 H 1.08998 * 109.47246 * 218.64218 * 11 10 8 31 31 H 1.09006 * 109.47207 * 338.63785 * 11 10 8 32 32 H 0.96996 * 120.00056 * 180.02562 * 15 14 12 33 33 H 1.08997 * 109.47002 * 1.23543 * 20 10 8 34 34 H 1.09004 * 109.47371 * 60.00736 * 21 20 10 35 35 H 1.09007 * 109.47142 * 180.02562 * 21 20 10 36 36 H 1.08998 * 109.47835 * 299.99727 * 21 20 10 37 37 H 1.09001 * 109.47537 * 60.00180 * 22 20 10 38 38 H 1.08998 * 109.47044 * 180.02562 * 22 20 10 39 39 H 1.08997 * 109.47152 * 299.99832 * 22 20 10 40 40 H 1.08001 * 120.04366 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.2016 0.0000 4 6 3.5771 1.2145 -0.0063 5 6 4.2836 0.0210 -0.0010 6 8 5.6402 0.0321 -0.0010 7 6 3.5898 -1.1966 0.0049 8 6 4.3304 -2.4726 0.0111 9 8 5.4117 -2.5506 -0.5394 10 7 3.8084 -3.5517 0.6272 11 6 2.4393 -3.5078 1.1467 12 6 1.5068 -4.1637 0.1613 13 1 1.8950 -4.5728 -0.7597 14 6 0.1578 -4.2415 0.4356 15 7 -0.3151 -3.7437 1.5573 16 14 -0.9982 -5.0552 -0.7856 17 1 -0.2230 -5.5312 -1.9594 18 1 -1.6722 -6.2082 -0.1365 19 1 -2.0182 -4.0726 -1.2320 20 6 4.6101 -4.7688 0.7772 21 6 4.7423 -5.1124 2.2621 22 6 3.9246 -5.9243 0.0452 23 6 2.1928 -1.1951 0.0053 24 1 -0.3633 0.0046 1.0276 25 1 -0.3633 0.8878 -0.5178 26 1 -0.3634 -0.8922 -0.5099 27 1 1.6511 2.1338 0.0004 28 1 4.1076 2.1553 -0.0108 29 1 6.0335 0.0392 0.8823 30 1 2.3945 -4.0381 2.0979 31 1 2.1400 -2.4701 1.2948 32 1 -1.2640 -3.7988 1.7503 33 1 5.6005 -4.6061 0.3523 34 1 3.7518 -5.2752 2.6871 35 1 5.3391 -6.0177 2.3738 36 1 5.2306 -4.2892 2.7836 37 1 3.8304 -5.6794 -1.0127 38 1 4.5208 -6.8299 0.1572 39 1 2.9342 -6.0870 0.4701 40 1 1.6510 -2.1293 0.0099 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044414985.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:41 Heat of formation + Delta-G solvation = -56.135517 kcal Electronic energy + Delta-G solvation = -22705.415996 eV Core-core repulsion = 19485.363436 eV Total energy + Delta-G solvation = -3220.052560 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.65228 -39.77029 -38.11495 -37.24948 -35.04362 -33.62905 -32.57879 -31.30867 -29.40934 -28.05349 -27.14038 -25.23117 -24.66568 -23.16517 -21.67819 -20.14552 -19.00432 -18.57642 -18.17833 -17.20873 -16.78087 -16.40723 -16.26253 -15.79400 -15.26625 -14.94365 -14.76160 -14.55749 -14.39209 -14.21955 -13.88550 -13.67040 -13.37615 -12.97770 -12.89639 -12.78529 -12.68092 -12.56635 -12.49480 -12.28426 -12.14163 -11.93299 -11.62969 -11.41813 -11.34477 -10.66702 -10.49742 -9.75925 -9.48930 -9.25078 -8.18093 -6.29807 -0.02288 0.39605 1.38983 1.44934 1.53260 1.89830 2.27180 2.43703 2.77178 3.09588 3.31712 3.69123 4.02235 4.07397 4.11746 4.26545 4.41477 4.44295 4.53387 4.70143 4.74781 4.81230 4.88550 4.90488 4.92038 5.00055 5.09941 5.18642 5.19633 5.27931 5.35080 5.42500 5.47078 5.53741 5.72666 5.73991 5.90432 5.99923 6.07447 6.58617 6.82680 6.85004 7.29573 7.42019 8.85985 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013225 B = 0.009251 C = 0.006031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.753353 B = 3026.049807 C = 4641.215290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.119 4.119 3 C -0.073 4.073 4 C -0.158 4.158 5 C 0.135 3.865 6 O -0.495 6.495 7 C -0.189 4.189 8 C 0.549 3.451 9 O -0.586 6.586 10 N -0.588 5.588 11 C 0.223 3.777 12 C -0.538 4.538 13 H 0.052 0.948 14 C 0.039 3.961 15 N -0.900 5.900 16 Si 0.939 3.061 17 H -0.278 1.278 18 H -0.279 1.279 19 H -0.274 1.274 20 C 0.129 3.871 21 C -0.147 4.147 22 C -0.146 4.146 23 C -0.101 4.101 24 H 0.070 0.930 25 H 0.091 0.909 26 H 0.047 0.953 27 H 0.165 0.835 28 H 0.161 0.839 29 H 0.401 0.599 30 H 0.019 0.981 31 H 0.061 0.939 32 H 0.269 0.731 33 H 0.078 0.922 34 H 0.053 0.947 35 H 0.090 0.910 36 H 0.050 0.950 37 H 0.031 0.969 38 H 0.080 0.920 39 H 0.064 0.936 40 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.664 6.669 1.750 7.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.119 4.119 3 C -0.091 4.091 4 C -0.176 4.176 5 C 0.089 3.911 6 O -0.307 6.307 7 C -0.192 4.192 8 C 0.339 3.661 9 O -0.469 6.469 10 N -0.318 5.318 11 C 0.103 3.897 12 C -0.576 4.576 13 H 0.071 0.929 14 C -0.164 4.164 15 N -0.538 5.538 16 Si 0.765 3.235 17 H -0.203 1.203 18 H -0.204 1.204 19 H -0.199 1.199 20 C 0.026 3.974 21 C -0.205 4.205 22 C -0.204 4.204 23 C -0.119 4.119 24 H 0.089 0.911 25 H 0.110 0.890 26 H 0.066 0.934 27 H 0.183 0.817 28 H 0.179 0.821 29 H 0.259 0.741 30 H 0.037 0.963 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.108 0.892 36 H 0.070 0.930 37 H 0.050 0.950 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 2.987 6.600 1.005 7.314 hybrid contribution -0.603 -0.838 -0.050 1.034 sum 2.384 5.762 0.954 6.308 Atomic orbital electron populations 1.20691 0.89732 1.02771 1.02634 1.20215 0.97543 0.92704 1.01479 1.21449 0.93423 0.98298 0.95966 1.21531 0.94732 0.97297 1.04019 1.18692 0.83238 0.91224 0.97912 1.84740 1.15448 1.96257 1.34263 1.20464 0.94881 0.93423 1.10427 1.18507 0.84754 0.84540 0.78317 1.90655 1.23862 1.85615 1.46742 1.48235 1.15959 1.12027 1.55555 1.19985 0.76504 0.99145 0.94095 1.21537 0.92425 1.38503 1.05120 0.92944 1.25430 0.98955 0.95462 0.96551 1.69993 1.14859 1.44917 1.24051 0.85788 0.79312 0.78804 0.79553 1.20262 1.20443 1.19934 1.21060 0.94664 0.84482 0.97202 1.22019 1.02246 1.02162 0.94025 1.22085 1.01916 0.97341 0.99071 1.22954 0.93003 1.02531 0.93398 0.91140 0.89027 0.93367 0.81735 0.82125 0.74111 0.96259 0.92187 0.92115 0.90419 0.92802 0.89168 0.93047 0.94953 0.90153 0.91655 0.80785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.07 10.00 71.24 0.71 -2.36 16 2 C -0.12 -4.06 5.87 -19.90 -0.12 -4.18 16 3 C -0.07 -1.99 9.68 22.30 0.22 -1.77 16 4 C -0.16 -4.45 9.98 22.34 0.22 -4.23 16 5 C 0.14 4.88 6.69 22.84 0.15 5.03 16 6 O -0.50 -17.09 12.04 -71.77 -0.86 -17.95 16 7 C -0.19 -8.01 5.57 -20.01 -0.11 -8.12 16 8 C 0.55 25.58 7.33 86.69 0.64 26.21 16 9 O -0.59 -29.55 15.16 14.01 0.21 -29.34 16 10 N -0.59 -26.18 2.44 -805.90 -1.97 -28.15 16 11 C 0.22 10.52 4.35 85.63 0.37 10.89 16 12 C -0.54 -26.77 5.56 25.60 0.14 -26.63 16 13 H 0.05 2.74 6.71 -2.91 -0.02 2.72 16 14 C 0.04 1.90 5.36 84.66 0.45 2.36 16 15 N -0.90 -45.62 13.29 21.45 0.28 -45.34 16 16 Si 0.94 40.13 29.54 68.60 2.03 42.16 16 17 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 18 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 19 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 20 C 0.13 5.01 3.24 44.99 0.15 5.15 16 21 C -0.15 -4.76 9.12 71.98 0.66 -4.10 16 22 C -0.15 -5.47 8.09 71.98 0.58 -4.88 16 23 C -0.10 -4.24 7.10 22.52 0.16 -4.08 16 24 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 25 H 0.09 2.07 8.09 -2.38 -0.02 2.06 16 26 H 0.05 1.67 8.08 -2.39 -0.02 1.65 16 27 H 0.17 3.03 8.06 -2.91 -0.02 3.01 16 28 H 0.16 3.38 8.06 -2.91 -0.02 3.36 16 29 H 0.40 10.05 9.06 -74.06 -0.67 9.38 16 30 H 0.02 0.97 6.44 -2.39 -0.02 0.95 16 31 H 0.06 2.95 4.01 -2.42 -0.01 2.95 16 32 H 0.27 12.95 8.31 -92.71 -0.77 12.18 16 33 H 0.08 3.12 6.93 -2.39 -0.02 3.10 16 34 H 0.05 1.89 6.70 -2.38 -0.02 1.87 16 35 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16 36 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.03 1.30 7.87 -2.39 -0.02 1.28 16 38 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.06 2.68 6.42 -2.39 -0.02 2.66 16 40 H 0.18 8.28 3.24 -2.91 -0.01 8.27 16 Total: -1.00 -62.88 322.27 4.31 -58.57 By element: Atomic # 1 Polarization: 30.35 SS G_CDS: 0.40 Total: 30.74 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: 4.22 Total: -10.70 kcal Atomic # 7 Polarization: -71.80 SS G_CDS: -1.68 Total: -73.49 kcal Atomic # 8 Polarization: -46.64 SS G_CDS: -0.65 Total: -47.29 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 2.03 Total: 42.16 kcal Total: -62.88 4.31 -58.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044414985.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.439 kcal (2) G-P(sol) polarization free energy of solvation -62.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds