Wall clock time and date at job start Mon Mar 30 2020 02:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34230 * 117.00309 * 2 1 4 4 O 1.20819 * 119.99884 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99980 * 179.97438 * 3 2 1 6 6 N 1.46501 * 109.47322 * 180.02562 * 5 3 2 7 7 C 1.36936 * 119.99657 * 277.51946 * 6 5 3 8 8 H 1.07999 * 120.00365 * 11.87171 * 7 6 5 9 9 C 1.38813 * 119.99889 * 191.87237 * 7 6 5 10 10 N 1.31621 * 119.99917 * 53.13447 * 9 7 6 11 11 Si 1.86797 * 119.99997 * 233.12942 * 9 7 6 12 12 H 1.48498 * 109.46986 * 90.00124 * 11 9 7 13 13 H 1.48501 * 109.46911 * 209.99776 * 11 9 7 14 14 H 1.48491 * 109.47355 * 329.99964 * 11 9 7 15 15 C 1.46493 * 120.00086 * 97.51385 * 6 5 3 16 16 C 1.50702 * 109.47061 * 298.37528 * 15 6 5 17 17 C 1.38236 * 120.00070 * 281.09263 * 16 15 6 18 18 C 1.50705 * 119.99914 * 0.02562 * 17 16 15 19 19 C 1.38231 * 119.99956 * 180.21692 * 17 16 15 20 20 C 1.38228 * 120.00110 * 359.53433 * 19 17 16 21 21 C 1.38233 * 119.99941 * 0.27634 * 20 19 17 22 22 C 1.38236 * 120.00397 * 359.95703 * 21 20 19 23 23 C 1.50696 * 120.00432 * 180.02562 * 22 21 20 24 24 H 1.08994 * 109.46890 * 59.99798 * 1 2 3 25 25 H 1.08998 * 109.47286 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46656 * 299.99783 * 1 2 3 27 27 H 1.09000 * 109.46947 * 60.00036 * 5 3 2 28 28 H 1.09003 * 109.47169 * 300.00134 * 5 3 2 29 29 H 0.96996 * 119.99979 * 184.88980 * 10 9 7 30 30 H 1.08996 * 109.47094 * 178.37667 * 15 6 5 31 31 H 1.08999 * 109.47219 * 58.37464 * 15 6 5 32 32 H 1.09004 * 109.46820 * 278.64799 * 18 17 16 33 33 H 1.08997 * 109.47174 * 38.64564 * 18 17 16 34 34 H 1.08998 * 109.47296 * 158.65170 * 18 17 16 35 35 H 1.07999 * 120.00054 * 179.80914 * 19 17 16 36 36 H 1.08005 * 120.00179 * 180.25594 * 20 19 17 37 37 H 1.08000 * 120.00296 * 179.97438 * 21 20 19 38 38 H 1.08997 * 109.46902 * 88.41338 * 23 22 21 39 39 H 1.09009 * 109.46855 * 208.41083 * 23 22 21 40 40 H 1.09001 * 109.46852 * 328.40800 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 7 3.9819 2.6796 0.0011 7 6 4.0277 3.3804 -1.1745 8 1 3.5808 2.9679 -2.0669 9 6 4.6486 4.6211 -1.2191 10 7 5.8839 4.7549 -0.7847 11 14 3.7312 6.1009 -1.8959 12 1 3.0058 6.7805 -0.7927 13 1 4.6994 7.0461 -2.5078 14 1 2.7592 5.6525 -2.9250 15 6 4.3483 3.3346 1.2591 16 6 3.1617 3.3374 2.1882 17 6 2.1507 4.2642 2.0154 18 6 2.2349 5.2715 0.8977 19 6 1.0645 4.2696 2.8704 20 6 0.9846 3.3420 3.8921 21 6 1.9936 2.4127 4.0625 22 6 3.0822 2.4103 3.2106 23 6 4.1820 1.3969 3.3959 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 3.9564 0.7804 -0.8892 28 1 3.9558 0.7808 0.8908 29 1 6.2931 5.6335 -0.7496 30 1 4.6549 4.3611 1.0584 31 1 5.1724 2.7935 1.7240 32 1 2.8761 6.0989 1.2018 33 1 2.6522 4.7956 0.0103 34 1 1.2373 5.6487 0.6726 35 1 0.2762 4.9956 2.7373 36 1 0.1339 3.3436 4.5576 37 1 1.9314 1.6882 4.8610 38 1 3.9413 0.4931 2.8361 39 1 5.1224 1.8105 3.0314 40 1 4.2778 1.1541 4.4542 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084219332.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:07 Heat of formation + Delta-G solvation = -39.247900 kcal Electronic energy + Delta-G solvation = -23314.276770 eV Core-core repulsion = 20094.956512 eV Total energy + Delta-G solvation = -3219.320258 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.21050 -40.44136 -37.73194 -36.72828 -34.50971 -33.70874 -32.92770 -29.94903 -28.91957 -27.82875 -27.31315 -26.72093 -24.21538 -21.87442 -21.46992 -21.13848 -18.89424 -18.33007 -17.46622 -17.16963 -16.93123 -16.60841 -16.58936 -15.76530 -15.35913 -15.25687 -14.51285 -14.33981 -14.16328 -13.96880 -13.85278 -13.75652 -13.63951 -13.42553 -13.04596 -12.80447 -12.72347 -12.50371 -12.18753 -12.15226 -12.08490 -11.98743 -11.69696 -11.54377 -11.35698 -11.15145 -10.26440 -9.32295 -9.27337 -9.20079 -8.22687 -5.11491 0.59636 0.64558 1.37830 1.50742 1.55462 1.62911 2.02474 2.51609 2.87487 2.98554 3.67518 4.04116 4.08134 4.20782 4.26364 4.32249 4.35941 4.41105 4.44025 4.49223 4.55465 4.69767 4.71897 4.75252 4.80464 4.85012 4.92889 4.98666 5.14655 5.27148 5.30035 5.49528 5.58496 5.67363 5.68563 5.70041 5.82042 6.00778 6.15024 6.33464 6.93314 7.18464 7.71820 8.17606 8.80362 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015030 B = 0.009123 C = 0.007857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.493346 B = 3068.262966 C = 3562.873745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.376 6.376 3 C 0.421 3.579 4 O -0.512 6.512 5 C 0.154 3.846 6 N -0.560 5.560 7 C -0.283 4.283 8 H 0.057 0.943 9 C 0.022 3.978 10 N -0.846 5.846 11 Si 0.844 3.156 12 H -0.261 1.261 13 H -0.305 1.305 14 H -0.287 1.287 15 C 0.189 3.811 16 C -0.107 4.107 17 C -0.056 4.056 18 C -0.129 4.129 19 C -0.149 4.149 20 C -0.122 4.122 21 C -0.137 4.137 22 C -0.092 4.092 23 C -0.115 4.115 24 H 0.046 0.954 25 H 0.130 0.870 26 H 0.048 0.952 27 H 0.096 0.904 28 H 0.110 0.890 29 H 0.258 0.742 30 H 0.064 0.936 31 H 0.048 0.952 32 H 0.045 0.955 33 H 0.098 0.902 34 H 0.045 0.955 35 H 0.117 0.883 36 H 0.141 0.859 37 H 0.144 0.856 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.907 -8.782 9.467 14.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.293 6.293 3 C 0.260 3.740 4 O -0.398 6.398 5 C 0.024 3.976 6 N -0.278 5.278 7 C -0.410 4.410 8 H 0.075 0.925 9 C -0.180 4.180 10 N -0.485 5.485 11 Si 0.670 3.330 12 H -0.187 1.187 13 H -0.233 1.233 14 H -0.213 1.213 15 C 0.064 3.936 16 C -0.109 4.109 17 C -0.056 4.056 18 C -0.186 4.186 19 C -0.168 4.168 20 C -0.140 4.140 21 C -0.155 4.155 22 C -0.092 4.092 23 C -0.171 4.171 24 H 0.065 0.935 25 H 0.148 0.852 26 H 0.067 0.933 27 H 0.113 0.887 28 H 0.128 0.872 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.116 0.884 34 H 0.065 0.935 35 H 0.135 0.865 36 H 0.159 0.841 37 H 0.162 0.838 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.919 -8.375 9.399 14.365 hybrid contribution -0.948 1.598 -0.859 2.047 sum -7.867 -6.777 8.540 13.444 Atomic orbital electron populations 1.23284 0.76802 1.04707 1.01204 1.86541 1.23630 1.34385 1.84696 1.26481 0.94699 0.80997 0.71795 1.90612 1.67287 1.37247 1.44640 1.20566 0.85523 0.87089 1.04415 1.43695 1.74496 1.06874 1.02779 1.18725 1.31519 1.01055 0.89651 0.92484 1.24570 0.94263 1.00439 0.98717 1.70798 1.08353 1.23547 1.45790 0.87380 0.81494 0.85126 0.79028 1.18662 1.23344 1.21316 1.19864 0.91497 0.98681 0.83523 1.20511 0.97937 0.95766 0.96727 1.19745 0.94494 0.96247 0.95151 1.21236 1.00548 0.97160 0.99606 1.21126 0.97996 1.00827 0.96804 1.21253 0.99519 0.95316 0.97930 1.21193 0.93960 1.00036 1.00327 1.20073 0.97375 0.96799 0.95000 1.20937 0.96046 0.96799 1.03332 0.93478 0.85235 0.93282 0.88653 0.87233 0.93256 0.91814 0.93374 0.93591 0.88385 0.93543 0.86493 0.84089 0.83815 0.90650 0.91559 0.89504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.89 10.56 113.37 1.20 2.09 16 2 O -0.38 -12.35 10.56 -51.41 -0.54 -12.90 16 3 C 0.42 16.52 7.61 71.24 0.54 17.06 16 4 O -0.51 -23.46 14.24 21.98 0.31 -23.15 16 5 C 0.15 5.91 5.96 85.63 0.51 6.42 16 6 N -0.56 -25.84 2.08 -710.70 -1.48 -27.32 16 7 C -0.28 -14.97 7.95 84.03 0.67 -14.30 16 8 H 0.06 3.16 8.06 -2.91 -0.02 3.14 16 9 C 0.02 1.19 3.48 84.86 0.30 1.48 16 10 N -0.85 -46.36 12.52 21.65 0.27 -46.09 16 11 Si 0.84 42.23 27.01 68.60 1.85 44.09 16 12 H -0.26 -12.61 5.37 99.48 0.53 -12.07 16 13 H -0.31 -15.45 7.11 99.48 0.71 -14.75 16 14 H -0.29 -14.79 7.11 99.48 0.71 -14.09 16 15 C 0.19 8.39 4.58 85.64 0.39 8.78 16 16 C -0.11 -4.31 4.01 -19.86 -0.08 -4.39 16 17 C -0.06 -2.33 4.81 -19.87 -0.10 -2.43 16 18 C -0.13 -5.90 6.96 71.24 0.50 -5.40 16 19 C -0.15 -5.37 9.67 22.27 0.22 -5.15 16 20 C -0.12 -3.66 10.05 22.27 0.22 -3.44 16 21 C -0.14 -3.98 9.71 22.27 0.22 -3.76 16 22 C -0.09 -3.02 5.88 -19.87 -0.12 -3.13 16 23 C -0.12 -3.00 8.89 71.23 0.63 -2.37 16 24 H 0.05 1.30 8.13 -2.39 -0.02 1.28 16 25 H 0.13 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.05 1.34 8.13 -2.38 -0.02 1.32 16 27 H 0.10 3.49 8.10 -2.39 -0.02 3.48 16 28 H 0.11 3.58 5.87 -2.39 -0.01 3.56 16 29 H 0.26 13.65 8.32 -92.71 -0.77 12.88 16 30 H 0.06 3.23 4.98 -2.39 -0.01 3.22 16 31 H 0.05 2.02 5.56 -2.39 -0.01 2.00 16 32 H 0.05 2.08 7.71 -2.39 -0.02 2.06 16 33 H 0.10 4.94 2.29 -2.39 -0.01 4.94 16 34 H 0.05 1.99 8.02 -2.39 -0.02 1.97 16 35 H 0.12 3.84 8.05 -2.91 -0.02 3.82 16 36 H 0.14 3.25 8.06 -2.91 -0.02 3.22 16 37 H 0.14 3.15 8.06 -2.91 -0.02 3.12 16 38 H 0.07 1.83 6.86 -2.39 -0.02 1.81 16 39 H 0.07 1.86 5.81 -2.38 -0.01 1.84 16 40 H 0.09 1.77 8.10 -2.39 -0.02 1.75 16 Total: -1.00 -63.53 314.34 6.39 -57.15 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.87 Total: 16.77 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: 5.10 Total: -8.55 kcal Atomic # 7 Polarization: -72.20 SS G_CDS: -1.21 Total: -73.41 kcal Atomic # 8 Polarization: -35.81 SS G_CDS: -0.23 Total: -36.04 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 1.85 Total: 44.09 kcal Total: -63.53 6.39 -57.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084219332.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.899 kcal (2) G-P(sol) polarization free energy of solvation -63.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds