Wall clock time and date at job start Mon Mar 30 2020 01:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86799 * 119.99980 * 2 1 4 4 H 1.48508 * 109.47185 * 240.00633 * 3 2 1 5 5 H 1.48503 * 109.47323 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47228 * 120.00560 * 3 2 1 7 7 C 1.38652 * 119.99955 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00156 * 179.97438 * 7 2 1 9 9 O 1.34827 * 120.00142 * 359.97438 * 7 2 1 10 10 C 1.35753 * 117.00370 * 185.08150 * 9 7 2 11 11 C 1.38952 * 120.03288 * 174.47823 * 10 9 7 12 12 C 1.38137 * 120.07674 * 179.97438 * 11 10 9 13 13 C 1.38185 * 120.14388 * 0.02562 * 12 11 10 14 14 C 1.38968 * 120.06160 * 0.02562 * 13 12 11 15 15 N 1.39678 * 120.03867 * 180.02562 * 14 13 12 16 16 C 1.46503 * 119.99940 * 359.97438 * 15 14 13 17 17 H 1.08994 * 109.60769 * 325.21122 * 16 15 14 18 18 C 1.54204 * 109.53791 * 205.00138 * 16 15 14 19 19 C 1.46282 * 111.92426 * 162.55304 * 18 16 15 20 20 C 1.54122 * 112.19664 * 61.45889 * 19 18 16 21 21 O 1.40315 * 108.70997 * 280.44739 * 20 19 18 22 22 C 1.43988 * 116.58485 * 95.03625 * 21 20 19 23 23 C 1.50678 * 109.48857 * 85.48748 * 16 15 14 24 24 C 1.38732 * 120.02778 * 354.75859 * 10 9 7 25 25 H 0.96996 * 120.00286 * 359.97438 * 1 2 3 26 26 H 1.07995 * 119.96014 * 0.02607 * 11 10 9 27 27 H 1.08001 * 119.92531 * 180.02562 * 12 11 10 28 28 H 1.07993 * 119.97318 * 180.02562 * 13 12 11 29 29 H 0.97003 * 119.99793 * 179.97438 * 15 14 13 30 30 H 1.09006 * 108.97346 * 41.94898 * 18 16 15 31 31 H 1.08999 * 108.97798 * 283.16646 * 18 16 15 32 32 H 1.09000 * 108.93781 * 182.15833 * 19 18 16 33 33 H 1.08997 * 108.93575 * 300.84798 * 19 18 16 34 34 H 1.09006 * 109.59642 * 40.21694 * 20 19 18 35 35 H 1.08993 * 109.59392 * 160.52005 * 20 19 18 36 36 H 1.09004 * 108.69671 * 78.90809 * 22 21 20 37 37 H 1.08996 * 108.69844 * 197.00513 * 22 21 20 38 38 H 1.09006 * 108.93190 * 89.51131 * 23 16 15 39 39 H 1.09002 * 108.91576 * 331.00165 * 23 16 15 40 40 H 1.08000 * 120.07032 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1032 1.6965 -1.2126 5 1 1.2845 2.7465 0.0006 6 1 3.1034 1.6964 1.2124 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0699 -3.5046 0.1061 11 6 1.4353 -4.7347 0.2281 12 6 2.1826 -5.8915 0.3360 13 6 3.5630 -5.8296 0.3237 14 6 4.2037 -4.6024 0.2030 15 7 5.5991 -4.5404 0.1900 16 6 6.3880 -5.7696 0.3042 17 1 5.8773 -6.4721 0.9629 18 6 7.7785 -5.4380 0.8824 19 6 8.4535 -6.6288 1.3987 20 6 8.7009 -7.6804 0.2995 21 8 7.5095 -8.3872 0.0764 22 6 6.6744 -7.9193 -0.9992 23 6 6.5574 -6.3867 -1.0599 24 6 3.4556 -3.4381 0.0991 25 1 -0.4850 0.8400 0.0004 26 1 0.3566 -4.7865 0.2376 27 1 1.6868 -6.8464 0.4303 28 1 4.1444 -6.7357 0.4079 29 1 6.0457 -3.6835 0.1054 30 1 7.6631 -4.7170 1.6918 31 1 8.3920 -4.9947 0.0981 32 1 9.4109 -6.3343 1.8285 33 1 7.8373 -7.0738 2.1799 34 1 9.0084 -7.1825 -0.6202 35 1 9.4823 -8.3687 0.6214 36 1 7.0876 -8.2757 -1.9428 37 1 5.6764 -8.3394 -0.8748 38 1 7.4582 -5.9822 -1.5216 39 1 5.6981 -6.1227 -1.6764 40 1 3.9510 -2.4826 0.0094 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086871898.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:58 Heat of formation + Delta-G solvation = -48.881530 kcal Electronic energy + Delta-G solvation = -21429.451334 eV Core-core repulsion = 18209.713331 eV Total energy + Delta-G solvation = -3219.738004 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.93200 -38.83886 -37.08184 -35.47820 -33.49527 -32.21275 -31.79486 -28.96192 -28.20709 -26.51255 -25.24868 -25.02847 -21.91121 -21.25803 -20.93476 -19.99465 -17.86949 -17.30309 -16.98710 -16.50357 -15.70110 -15.28592 -15.03477 -14.51086 -14.31357 -13.95400 -13.89066 -13.61070 -13.39989 -13.17310 -12.92385 -12.76367 -12.26595 -11.77537 -11.64040 -11.57911 -11.41968 -11.03928 -10.83236 -10.81124 -10.72511 -10.65641 -10.48545 -10.32507 -9.71863 -9.37460 -9.33207 -8.73543 -7.33116 -6.74940 -6.38991 -3.98312 2.41076 2.59709 3.14828 3.16726 3.18866 3.56614 3.80543 4.01109 4.45474 4.57963 4.71133 4.75777 4.90030 4.99266 5.14702 5.19798 5.25699 5.33182 5.38156 5.43504 5.57345 5.71123 5.76130 5.77402 5.91159 5.95234 6.02943 6.04623 6.18677 6.31380 6.41008 6.68488 6.69457 7.07410 7.17339 7.18928 7.42616 7.51909 7.70041 8.05435 8.07349 8.24018 9.07041 9.80140 10.79428 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025888 B = 0.003959 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.311185 B = 7071.230884 C = 7874.742764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.039 3.961 3 Si 0.939 3.061 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.271 1.271 7 C -0.389 4.389 8 H 0.090 0.910 9 O -0.179 6.179 10 C 0.189 3.811 11 C -0.236 4.236 12 C -0.040 4.040 13 C -0.280 4.280 14 C 0.249 3.751 15 N -0.751 5.751 16 C 0.162 3.838 17 H 0.085 0.915 18 C -0.127 4.127 19 C -0.147 4.147 20 C 0.066 3.934 21 O -0.385 6.385 22 C 0.066 3.934 23 C -0.172 4.172 24 C -0.303 4.303 25 H 0.269 0.731 26 H 0.112 0.888 27 H 0.110 0.890 28 H 0.105 0.895 29 H 0.393 0.607 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.082 0.918 36 H 0.050 0.950 37 H 0.090 0.910 38 H 0.061 0.939 39 H 0.086 0.914 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.377 -12.149 -0.233 20.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.165 4.165 3 Si 0.764 3.236 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.196 1.196 7 C -0.466 4.466 8 H 0.107 0.893 9 O -0.082 6.082 10 C 0.135 3.865 11 C -0.257 4.257 12 C -0.059 4.059 13 C -0.302 4.302 14 C 0.148 3.852 15 N -0.381 5.381 16 C 0.056 3.944 17 H 0.103 0.897 18 C -0.165 4.165 19 C -0.185 4.185 20 C -0.011 4.011 21 O -0.304 6.304 22 C -0.011 4.011 23 C -0.211 4.211 24 C -0.326 4.326 25 H 0.079 0.921 26 H 0.130 0.870 27 H 0.128 0.872 28 H 0.123 0.877 29 H 0.227 0.773 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.101 0.899 36 H 0.068 0.932 37 H 0.108 0.892 38 H 0.080 0.920 39 H 0.105 0.895 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 15.934 -12.246 -0.131 20.096 hybrid contribution 0.816 1.522 -0.268 1.748 sum 16.750 -10.724 -0.399 19.892 Atomic orbital electron populations 1.70027 1.05909 1.27612 1.46496 1.25258 0.95803 0.98721 0.96740 0.85816 0.78704 0.80030 0.79043 1.19630 1.20309 1.19615 1.21244 0.91690 0.80933 1.52726 0.89285 1.83986 1.34228 1.11461 1.78515 1.19072 0.89506 0.87832 0.90116 1.20042 0.99346 0.90362 1.15956 1.20385 0.93029 0.96503 0.95995 1.20118 0.94389 0.95192 1.20536 1.17461 0.82242 0.93529 0.91926 1.44652 1.02778 1.07507 1.83200 1.20445 0.91158 0.87509 0.95301 0.89720 1.20870 0.95629 0.98681 1.01333 1.21062 1.01273 0.96388 0.99823 1.22342 0.87149 0.94279 0.97373 1.87462 1.33243 1.55707 1.54014 1.22925 0.95078 0.93668 0.89381 1.22562 1.03423 0.95465 0.99636 1.20504 0.93740 0.97138 1.21261 0.92075 0.86956 0.87229 0.87719 0.77321 0.91099 0.92006 0.91061 0.90795 0.93074 0.89949 0.93186 0.89158 0.91992 0.89494 0.85887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.78 13.67 55.48 0.76 -25.02 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 20.79 29.55 -169.99 -5.02 15.76 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 7 C -0.39 -11.09 9.49 30.89 0.29 -10.80 16 8 H 0.09 2.35 5.20 -52.49 -0.27 2.08 16 9 O -0.18 -5.23 9.76 0.05 0.00 -5.23 16 10 C 0.19 4.72 6.65 -39.13 -0.26 4.46 16 11 C -0.24 -5.21 9.99 -39.35 -0.39 -5.60 16 12 C -0.04 -0.75 10.03 -39.64 -0.40 -1.15 16 13 C -0.28 -5.01 9.17 -39.33 -0.36 -5.37 16 14 C 0.25 4.67 6.51 -83.81 -0.55 4.12 16 15 N -0.75 -11.12 5.16 -52.70 -0.27 -11.39 16 16 C 0.16 1.95 1.85 -68.46 -0.13 1.83 16 17 H 0.08 1.15 6.16 -51.93 -0.32 0.83 16 18 C -0.13 -1.24 4.83 -29.30 -0.14 -1.38 16 19 C -0.15 -1.27 5.47 -29.34 -0.16 -1.43 16 20 C 0.07 0.56 6.38 37.74 0.24 0.80 16 21 O -0.39 -4.19 10.17 -33.67 -0.34 -4.53 16 22 C 0.07 0.66 6.67 37.59 0.25 0.91 16 23 C -0.17 -1.87 4.93 -27.47 -0.14 -2.01 16 24 C -0.30 -6.74 9.01 -39.20 -0.35 -7.09 16 25 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 26 H 0.11 2.41 8.06 -52.49 -0.42 1.99 16 27 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 28 H 0.10 1.65 6.20 -52.49 -0.33 1.32 16 29 H 0.39 5.44 8.62 -40.82 -0.35 5.08 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.55 7.59 -51.93 -0.39 0.16 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.72 8.13 -51.93 -0.42 0.29 16 34 H 0.05 0.40 6.98 -51.93 -0.36 0.04 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.06 0.61 6.83 -51.93 -0.35 0.26 16 39 H 0.09 1.10 7.87 -51.93 -0.41 0.70 16 40 H 0.12 2.75 5.63 -52.49 -0.30 2.46 16 LS Contribution 320.43 15.07 4.83 4.83 Total: -1.00 -31.35 320.43 -7.84 -39.18 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -5.60 Total: 8.11 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: -2.19 Total: -21.72 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: 0.49 Total: -36.41 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: -0.34 Total: -9.76 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.35 -7.84 -39.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086871898.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.698 kcal (2) G-P(sol) polarization free energy of solvation -31.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds