Wall clock time and date at job start Mon Mar 30 2020 01:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86799 * 119.99980 * 2 1 4 4 H 1.48508 * 109.47185 * 240.00633 * 3 2 1 5 5 H 1.48503 * 109.47323 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47228 * 120.00560 * 3 2 1 7 7 C 1.38652 * 119.99955 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00156 * 179.97438 * 7 2 1 9 9 O 1.34827 * 120.00142 * 359.97438 * 7 2 1 10 10 C 1.35753 * 117.00370 * 185.08150 * 9 7 2 11 11 C 1.38952 * 120.03288 * 174.47823 * 10 9 7 12 12 C 1.38137 * 120.07674 * 179.97438 * 11 10 9 13 13 C 1.38185 * 120.14388 * 0.02562 * 12 11 10 14 14 C 1.38968 * 120.06160 * 0.02562 * 13 12 11 15 15 N 1.39678 * 120.03867 * 180.02562 * 14 13 12 16 16 C 1.46503 * 119.99940 * 359.97438 * 15 14 13 17 17 H 1.08994 * 109.60769 * 325.21122 * 16 15 14 18 18 C 1.54204 * 109.53791 * 205.00138 * 16 15 14 19 19 C 1.46282 * 111.92426 * 162.55304 * 18 16 15 20 20 C 1.54122 * 112.19664 * 61.45889 * 19 18 16 21 21 O 1.40315 * 108.70997 * 280.44739 * 20 19 18 22 22 C 1.43988 * 116.58485 * 95.03625 * 21 20 19 23 23 C 1.50678 * 109.48857 * 85.48748 * 16 15 14 24 24 C 1.38732 * 120.02778 * 354.75859 * 10 9 7 25 25 H 0.96996 * 120.00286 * 359.97438 * 1 2 3 26 26 H 1.07995 * 119.96014 * 0.02607 * 11 10 9 27 27 H 1.08001 * 119.92531 * 180.02562 * 12 11 10 28 28 H 1.07993 * 119.97318 * 180.02562 * 13 12 11 29 29 H 0.97003 * 119.99793 * 179.97438 * 15 14 13 30 30 H 1.09006 * 108.97346 * 41.94898 * 18 16 15 31 31 H 1.08999 * 108.97798 * 283.16646 * 18 16 15 32 32 H 1.09000 * 108.93781 * 182.15833 * 19 18 16 33 33 H 1.08997 * 108.93575 * 300.84798 * 19 18 16 34 34 H 1.09006 * 109.59642 * 40.21694 * 20 19 18 35 35 H 1.08993 * 109.59392 * 160.52005 * 20 19 18 36 36 H 1.09004 * 108.69671 * 78.90809 * 22 21 20 37 37 H 1.08996 * 108.69844 * 197.00513 * 22 21 20 38 38 H 1.09006 * 108.93190 * 89.51131 * 23 16 15 39 39 H 1.09002 * 108.91576 * 331.00165 * 23 16 15 40 40 H 1.08000 * 120.07032 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1032 1.6965 -1.2126 5 1 1.2845 2.7465 0.0006 6 1 3.1034 1.6964 1.2124 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0699 -3.5046 0.1061 11 6 1.4353 -4.7347 0.2281 12 6 2.1826 -5.8915 0.3360 13 6 3.5630 -5.8296 0.3237 14 6 4.2037 -4.6024 0.2030 15 7 5.5991 -4.5404 0.1900 16 6 6.3880 -5.7696 0.3042 17 1 5.8773 -6.4721 0.9629 18 6 7.7785 -5.4380 0.8824 19 6 8.4535 -6.6288 1.3987 20 6 8.7009 -7.6804 0.2995 21 8 7.5095 -8.3872 0.0764 22 6 6.6744 -7.9193 -0.9992 23 6 6.5574 -6.3867 -1.0599 24 6 3.4556 -3.4381 0.0991 25 1 -0.4850 0.8400 0.0004 26 1 0.3566 -4.7865 0.2376 27 1 1.6868 -6.8464 0.4303 28 1 4.1444 -6.7357 0.4079 29 1 6.0457 -3.6835 0.1054 30 1 7.6631 -4.7170 1.6918 31 1 8.3920 -4.9947 0.0981 32 1 9.4109 -6.3343 1.8285 33 1 7.8373 -7.0738 2.1799 34 1 9.0084 -7.1825 -0.6202 35 1 9.4823 -8.3687 0.6214 36 1 7.0876 -8.2757 -1.9428 37 1 5.6764 -8.3394 -0.8748 38 1 7.4582 -5.9822 -1.5216 39 1 5.6981 -6.1227 -1.6764 40 1 3.9510 -2.4826 0.0094 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086871898.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:57 Heat of formation + Delta-G solvation = -69.369418 kcal Electronic energy + Delta-G solvation = -21430.339756 eV Core-core repulsion = 18209.713331 eV Total energy + Delta-G solvation = -3220.626425 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.05162 -40.32644 -38.60509 -36.74280 -34.55984 -34.12249 -32.89996 -30.58002 -29.68716 -27.46949 -27.10894 -26.01182 -23.49957 -22.61614 -21.77598 -21.24179 -19.69631 -18.99878 -17.76885 -17.49622 -17.02843 -16.76970 -16.22314 -16.03594 -15.73058 -15.50777 -15.22906 -14.90656 -14.55828 -14.41962 -14.13460 -13.90469 -13.79612 -13.49936 -13.01533 -12.73190 -12.62010 -12.45264 -12.26416 -12.14456 -11.91124 -11.78283 -11.58049 -11.38053 -11.27353 -10.95407 -10.63808 -10.35538 -9.11083 -8.45140 -8.24496 -6.13746 0.76089 0.91625 1.33902 1.45749 1.50637 2.18652 2.47200 2.89192 2.96650 3.26461 3.58740 3.60806 3.84818 4.00048 4.10714 4.16095 4.23977 4.36345 4.38537 4.55396 4.59396 4.61298 4.64529 4.74330 4.83769 4.91031 5.03608 5.09132 5.13435 5.15660 5.16481 5.20134 5.26600 5.38372 5.48090 5.75494 5.80908 6.03966 6.11551 6.48376 6.60336 6.87830 6.99989 7.83349 8.78394 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025888 B = 0.003959 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.311185 B = 7071.230884 C = 7874.742764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 1.018 2.982 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.258 1.258 7 C -0.412 4.412 8 H 0.099 0.901 9 O -0.232 6.232 10 C 0.153 3.847 11 C -0.261 4.261 12 C -0.026 4.026 13 C -0.264 4.264 14 C 0.258 3.742 15 N -0.740 5.740 16 C 0.158 3.842 17 H 0.074 0.926 18 C -0.121 4.121 19 C -0.145 4.145 20 C 0.060 3.940 21 O -0.402 6.402 22 C 0.067 3.933 23 C -0.165 4.165 24 C -0.316 4.316 25 H 0.272 0.728 26 H 0.106 0.894 27 H 0.151 0.849 28 H 0.137 0.863 29 H 0.399 0.601 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.098 0.902 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.772 -13.650 -0.204 24.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.221 4.221 3 Si 0.837 3.163 4 H -0.181 1.181 5 H -0.196 1.196 6 H -0.183 1.183 7 C -0.489 4.489 8 H 0.117 0.883 9 O -0.139 6.139 10 C 0.102 3.898 11 C -0.282 4.282 12 C -0.045 4.045 13 C -0.287 4.287 14 C 0.154 3.846 15 N -0.369 5.369 16 C 0.053 3.947 17 H 0.092 0.908 18 C -0.159 4.159 19 C -0.183 4.183 20 C -0.016 4.016 21 O -0.321 6.321 22 C -0.009 4.009 23 C -0.204 4.204 24 C -0.340 4.340 25 H 0.081 0.919 26 H 0.124 0.876 27 H 0.168 0.832 28 H 0.155 0.845 29 H 0.233 0.767 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.110 0.890 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.116 0.884 36 H 0.083 0.917 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 19.402 -13.806 -0.100 23.813 hybrid contribution -0.058 1.659 -0.250 1.678 sum 19.344 -12.148 -0.350 22.845 Atomic orbital electron populations 1.70182 1.08036 1.28799 1.49071 1.26588 0.96840 1.02708 0.95931 0.84660 0.77409 0.74338 0.79848 1.18147 1.19555 1.18258 1.21758 0.92424 0.81538 1.53144 0.88347 1.83948 1.35941 1.12657 1.81322 1.19636 0.90870 0.87690 0.91643 1.20257 0.99592 0.90739 1.17632 1.20818 0.93337 0.96841 0.93476 1.20537 0.94435 0.95921 1.17771 1.17521 0.84006 0.92686 0.90359 1.44800 1.01378 1.09160 1.81603 1.20672 0.91951 0.85941 0.96140 0.90786 1.20840 0.94226 0.99304 1.01529 1.21044 1.01900 0.95768 0.99558 1.22524 0.86728 0.94614 0.97769 1.87451 1.34094 1.56303 1.54270 1.22924 0.95296 0.92645 0.90046 1.22469 1.03325 0.96360 0.98288 1.20514 0.93072 0.98167 1.22272 0.91875 0.87575 0.83155 0.84533 0.76663 0.91559 0.90605 0.88988 0.92024 0.92054 0.88356 0.91656 0.89353 0.90604 0.91235 0.86819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.83 13.67 21.61 0.30 -57.53 16 2 C -0.02 -1.37 5.49 84.83 0.47 -0.90 16 3 Si 1.02 43.56 29.55 68.60 2.03 45.59 16 4 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 5 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 6 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 7 C -0.41 -24.70 9.49 67.92 0.64 -24.06 16 8 H 0.10 5.42 5.20 -2.91 -0.02 5.41 16 9 O -0.23 -14.51 9.76 -22.74 -0.22 -14.73 16 10 C 0.15 7.98 6.65 22.56 0.15 8.13 16 11 C -0.26 -11.79 9.99 22.42 0.22 -11.57 16 12 C -0.03 -0.93 10.03 22.23 0.22 -0.70 16 13 C -0.26 -8.79 9.17 22.43 0.21 -8.59 16 14 C 0.26 9.35 6.51 38.20 0.25 9.60 16 15 N -0.74 -20.40 5.16 -320.65 -1.65 -22.05 16 16 C 0.16 3.35 1.85 44.65 0.08 3.43 16 17 H 0.07 1.77 6.16 -2.39 -0.01 1.76 16 18 C -0.12 -1.97 4.83 28.93 0.14 -1.83 16 19 C -0.14 -1.99 5.47 28.90 0.16 -1.84 16 20 C 0.06 0.81 6.38 72.36 0.46 1.27 16 21 O -0.40 -7.43 10.17 -143.40 -1.46 -8.89 16 22 C 0.07 1.13 6.67 72.26 0.48 1.62 16 23 C -0.17 -3.10 4.93 30.12 0.15 -2.95 16 24 C -0.32 -14.37 9.01 22.52 0.20 -14.17 16 25 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 26 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 27 H 0.15 4.08 8.06 -2.91 -0.02 4.06 16 28 H 0.14 3.74 6.20 -2.91 -0.02 3.72 16 29 H 0.40 10.29 8.62 -92.71 -0.80 9.49 16 30 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.08 1.05 7.59 -2.39 -0.02 1.03 16 32 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.06 1.02 8.13 -2.39 -0.02 1.00 16 34 H 0.06 0.70 6.98 -2.38 -0.02 0.69 16 35 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.08 1.22 6.83 -2.38 -0.02 1.21 16 39 H 0.07 1.58 7.87 -2.39 -0.02 1.56 16 40 H 0.11 5.26 5.63 -2.91 -0.02 5.25 16 Total: -1.00 -72.68 320.43 3.08 -69.60 By element: Atomic # 1 Polarization: 30.31 SS G_CDS: 0.25 Total: 30.56 kcal Atomic # 6 Polarization: -46.39 SS G_CDS: 3.84 Total: -42.56 kcal Atomic # 7 Polarization: -78.23 SS G_CDS: -1.36 Total: -79.59 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -1.68 Total: -23.62 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -72.68 3.08 -69.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086871898.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.234 kcal (2) G-P(sol) polarization free energy of solvation -72.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds