Wall clock time and date at job start Mon Mar 30 2020 01:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00088 * 2 1 4 4 H 1.48503 * 109.47248 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47051 * 299.99667 * 3 2 1 6 6 H 1.48495 * 109.47220 * 59.99455 * 3 2 1 7 7 C 1.37875 * 119.99833 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99952 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00335 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47493 * 179.97438 * 9 7 2 11 11 O 1.42900 * 109.47255 * 180.02562 * 10 9 7 12 12 C 1.35894 * 116.99826 * 180.02562 * 11 10 9 13 13 C 1.38821 * 120.01937 * 359.97438 * 12 11 10 14 14 C 1.38172 * 120.09155 * 180.02562 * 13 12 11 15 15 C 1.38166 * 120.12881 * 359.74217 * 14 13 12 16 16 C 1.38926 * 120.03427 * 0.50730 * 15 14 13 17 17 N 1.39663 * 120.04531 * 179.77009 * 16 15 14 18 18 C 1.46501 * 120.00252 * 359.72853 * 17 16 15 19 19 H 1.09000 * 110.45153 * 327.60132 * 18 17 16 20 20 C 1.54510 * 110.51045 * 205.00176 * 18 17 16 21 21 C 1.54477 * 104.18108 * 241.14367 * 20 18 17 22 22 O 1.44642 * 104.69773 * 336.19290 * 21 20 18 23 23 C 1.44415 * 105.37338 * 40.34325 * 22 21 20 24 24 C 1.38576 * 120.01764 * 180.02562 * 12 11 10 25 25 H 0.96997 * 119.99759 * 0.02562 * 1 2 3 26 26 H 1.09008 * 109.47013 * 60.00029 * 9 7 2 27 27 H 1.08995 * 109.47328 * 300.00053 * 9 7 2 28 28 H 1.09001 * 109.47179 * 59.99840 * 10 9 7 29 29 H 1.08998 * 109.47388 * 300.00708 * 10 9 7 30 30 H 1.07994 * 119.95567 * 359.97438 * 13 12 11 31 31 H 1.08002 * 119.93588 * 179.97438 * 14 13 12 32 32 H 1.08003 * 119.98142 * 180.27924 * 15 14 13 33 33 H 0.97005 * 120.00055 * 179.72199 * 17 16 15 34 34 H 1.09002 * 110.51305 * 359.85897 * 20 18 17 35 35 H 1.08994 * 110.51141 * 122.43227 * 20 18 17 36 36 H 1.09006 * 110.37498 * 94.92285 * 21 20 18 37 37 H 1.09000 * 110.37254 * 217.25804 * 21 20 18 38 38 H 1.08998 * 110.37627 * 200.73568 * 23 22 21 39 39 H 1.09003 * 110.37369 * 78.39849 * 23 22 21 40 40 H 1.07998 * 120.06429 * 359.95166 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 8 1.5307 -4.8997 -0.0001 12 6 2.2709 -6.0393 0.0004 13 6 3.6572 -5.9671 0.0009 14 6 4.4112 -7.1250 0.0008 15 6 3.7883 -8.3583 0.0056 16 6 2.4013 -8.4367 -0.0001 17 7 1.7714 -9.6832 0.0000 18 6 2.5734 -10.9093 0.0000 19 1 3.5035 -10.7560 -0.5472 20 6 1.7722 -12.0803 -0.6116 21 6 1.6746 -13.1115 0.5345 22 8 2.7971 -12.8104 1.3956 23 6 2.8653 -11.3687 1.4457 24 6 1.6422 -7.2743 -0.0007 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8898 27 1 0.6241 -2.5568 0.8902 28 1 2.8719 -3.6044 0.8905 29 1 2.8720 -3.6044 -0.8894 30 1 4.1471 -5.0047 0.0005 31 1 5.4896 -7.0659 0.0008 32 1 4.3800 -9.2618 0.0101 33 1 0.8029 -9.7373 0.0001 34 1 0.7785 -11.7476 -0.9117 35 1 2.3051 -12.5044 -1.4625 36 1 0.7373 -12.9883 1.0771 37 1 1.7560 -14.1247 0.1412 38 1 3.8602 -11.0462 1.7528 39 1 2.1110 -10.9766 2.1280 40 1 0.5638 -7.3324 -0.0011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109431122.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:28 Heat of formation + Delta-G solvation = -83.549511 kcal Electronic energy + Delta-G solvation = -20405.583343 eV Core-core repulsion = 17184.342023 eV Total energy + Delta-G solvation = -3221.241320 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.17720 -40.41318 -38.74264 -35.99979 -35.37954 -32.61990 -32.34957 -30.86403 -29.82142 -28.64367 -26.93346 -24.11095 -23.85222 -23.46865 -22.13255 -21.45350 -19.46043 -18.41666 -17.67616 -17.37465 -16.95964 -16.91087 -16.58488 -16.43114 -16.17267 -16.07080 -15.30668 -14.50960 -14.49292 -14.33250 -14.22782 -14.00172 -13.59624 -13.20089 -13.01282 -12.82617 -12.62477 -12.53034 -12.50916 -12.25663 -11.99429 -11.83417 -11.61598 -11.53746 -11.36509 -10.95819 -10.74193 -10.62648 -9.23702 -8.39599 -8.26760 -6.40251 0.56027 0.66833 1.41232 1.42249 1.55863 2.10163 2.37467 2.67849 2.93346 3.07715 3.12651 3.53459 3.83095 3.95586 3.99483 4.19628 4.23966 4.27482 4.29210 4.32342 4.36556 4.50833 4.65970 4.68920 4.75105 4.80723 4.84154 4.86064 5.01732 5.05622 5.27360 5.32804 5.47363 5.51175 5.61347 5.66320 5.71851 5.80268 6.07356 6.37182 6.60783 6.74699 6.75800 7.29872 8.86719 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.052134 B = 0.002571 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.946025 B =10889.341969 C =11207.937260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.977 3.023 4 H -0.257 1.257 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.071 0.929 9 C 0.028 3.972 10 C 0.087 3.913 11 O -0.342 6.342 12 C 0.151 3.849 13 C -0.280 4.280 14 C -0.032 4.032 15 C -0.237 4.237 16 C 0.252 3.748 17 N -0.729 5.729 18 C 0.121 3.879 19 H 0.102 0.898 20 C -0.157 4.157 21 C 0.039 3.961 22 O -0.396 6.396 23 C 0.028 3.972 24 C -0.249 4.249 25 H 0.267 0.733 26 H -0.002 1.002 27 H -0.002 1.002 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.122 0.878 31 H 0.150 0.850 32 H 0.146 0.854 33 H 0.406 0.594 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.065 0.935 37 H 0.109 0.891 38 H 0.099 0.901 39 H 0.059 0.941 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.044 -25.935 -0.708 26.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.800 3.200 4 H -0.181 1.181 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.582 4.582 8 H 0.089 0.911 9 C -0.010 4.010 10 C 0.012 3.988 11 O -0.256 6.256 12 C 0.105 3.895 13 C -0.300 4.300 14 C -0.050 4.050 15 C -0.259 4.259 16 C 0.148 3.852 17 N -0.359 5.359 18 C 0.015 3.985 19 H 0.120 0.880 20 C -0.195 4.195 21 C -0.037 4.037 22 O -0.315 6.315 23 C -0.050 4.050 24 C -0.273 4.273 25 H 0.076 0.924 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.140 0.860 31 H 0.168 0.832 32 H 0.163 0.837 33 H 0.243 0.757 34 H 0.112 0.888 35 H 0.116 0.884 36 H 0.084 0.916 37 H 0.127 0.873 38 H 0.117 0.883 39 H 0.077 0.923 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.952 -26.126 -0.603 27.042 hybrid contribution -0.549 1.421 -0.004 1.524 sum 6.403 -24.704 -0.607 25.528 Atomic orbital electron populations 1.70131 1.08057 1.28161 1.50757 1.26058 0.95845 1.03731 0.94179 0.85222 0.79049 0.77809 0.77884 1.18111 1.20196 1.20223 1.21428 0.93831 0.90995 1.51939 0.91123 1.18978 0.94571 0.91455 0.95959 1.22839 0.95301 0.80131 1.00506 1.86055 1.37704 1.13899 1.87979 1.19167 0.90845 0.86230 0.93271 1.21246 0.92388 1.00698 1.15685 1.20973 1.00493 0.90669 0.92888 1.20791 0.92162 0.98754 1.14231 1.17404 0.91856 0.84794 0.91151 1.44674 1.08386 1.01134 1.81751 1.22349 0.96108 0.84117 0.95927 0.87987 1.23200 1.02151 0.94708 0.99451 1.23640 0.89612 1.00435 0.90016 1.89164 1.51055 1.21580 1.69692 1.24021 1.03105 0.80810 0.97049 1.19781 0.99990 0.89041 1.18457 0.92443 0.98351 0.98361 0.92252 0.92234 0.86045 0.83241 0.83682 0.75725 0.88756 0.88382 0.91644 0.87283 0.88285 0.92300 0.85824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.17 13.29 21.45 0.28 -56.88 16 2 C 0.00 0.01 5.46 84.65 0.46 0.48 16 3 Si 0.98 43.82 29.54 68.60 2.03 45.85 16 4 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 5 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.54 -31.10 9.11 25.60 0.23 -30.87 16 8 H 0.07 3.78 7.74 -2.91 -0.02 3.76 16 9 C 0.03 1.54 5.34 29.85 0.16 1.70 16 10 C 0.09 3.91 4.68 71.98 0.34 4.25 16 11 O -0.34 -15.05 10.13 -92.36 -0.94 -15.98 16 12 C 0.15 5.50 6.68 22.49 0.15 5.65 16 13 C -0.28 -8.86 9.04 22.39 0.20 -8.66 16 14 C -0.03 -0.77 10.03 22.24 0.22 -0.55 16 15 C -0.24 -5.18 9.21 22.42 0.21 -4.97 16 16 C 0.25 5.97 6.65 38.20 0.25 6.22 16 17 N -0.73 -12.19 5.27 -314.22 -1.65 -13.84 16 18 C 0.12 1.58 3.18 46.01 0.15 1.72 16 19 H 0.10 1.27 6.41 -2.39 -0.02 1.26 16 20 C -0.16 -1.44 6.84 31.61 0.22 -1.22 16 21 C 0.04 0.41 7.65 72.48 0.55 0.97 16 22 O -0.40 -6.72 11.65 -148.98 -1.74 -8.46 16 23 C 0.03 0.43 7.36 72.48 0.53 0.96 16 24 C -0.25 -7.63 9.83 22.49 0.22 -7.41 16 25 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 26 H 0.00 -0.12 8.14 -2.38 -0.02 -0.14 16 27 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 28 H 0.06 2.53 7.66 -2.39 -0.02 2.52 16 29 H 0.06 2.54 7.66 -2.39 -0.02 2.52 16 30 H 0.12 3.87 6.29 -2.91 -0.02 3.86 16 31 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 32 H 0.15 2.32 6.20 -2.91 -0.02 2.30 16 33 H 0.41 5.89 8.39 -92.70 -0.78 5.11 16 34 H 0.09 0.72 7.70 -2.39 -0.02 0.70 16 35 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 37 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.06 0.97 8.06 -2.39 -0.02 0.95 16 40 H 0.12 3.66 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -69.20 331.66 2.14 -67.06 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 0.26 Total: 13.99 kcal Atomic # 6 Polarization: -35.63 SS G_CDS: 3.90 Total: -31.74 kcal Atomic # 7 Polarization: -69.35 SS G_CDS: -1.37 Total: -70.72 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -2.67 Total: -24.44 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -69.20 2.14 -67.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109431122.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.492 kcal (2) G-P(sol) polarization free energy of solvation -69.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds