Wall clock time and date at job start Mon Mar 30 2020 01:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48500 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46942 * 300.00690 * 3 2 1 6 6 H 1.48504 * 109.46979 * 60.00603 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 O 1.42903 * 109.46726 * 180.02562 * 10 9 7 12 12 C 1.35901 * 116.99838 * 179.97438 * 11 10 9 13 13 C 1.38810 * 120.01568 * 0.02562 * 12 11 10 14 14 C 1.38181 * 120.09097 * 179.97438 * 13 12 11 15 15 C 1.38150 * 120.12637 * 359.97438 * 14 13 12 16 16 C 1.38925 * 120.03978 * 359.95739 * 15 14 13 17 17 N 1.39663 * 120.04823 * 180.02562 * 16 15 14 18 18 C 1.46495 * 120.00254 * 359.97438 * 17 16 15 19 19 H 1.09000 * 110.43522 * 36.09138 * 18 17 16 20 20 C 1.54808 * 110.49036 * 158.77920 * 18 17 16 21 21 C 1.55000 * 102.09353 * 97.79861 * 20 18 17 22 22 O 1.44376 * 103.48912 * 37.02405 * 21 20 18 23 23 C 1.43746 * 106.97683 * 319.93801 * 22 21 20 24 24 C 1.38573 * 120.01879 * 179.72016 * 12 11 10 25 25 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 27 27 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 28 28 H 1.09001 * 109.47194 * 299.99742 * 10 9 7 29 29 H 1.08992 * 109.47399 * 59.99914 * 10 9 7 30 30 H 1.07997 * 119.95828 * 359.97438 * 13 12 11 31 31 H 1.08008 * 119.93169 * 179.97438 * 14 13 12 32 32 H 1.08001 * 119.98079 * 179.97438 * 15 14 13 33 33 H 0.97004 * 119.99921 * 179.97438 * 17 16 15 34 34 H 1.09004 * 110.90896 * 215.99454 * 20 18 17 35 35 H 1.08997 * 110.90793 * 339.60135 * 20 18 17 36 36 H 1.08997 * 110.61651 * 278.52427 * 21 20 18 37 37 H 1.08996 * 110.75600 * 155.58952 * 21 20 18 38 38 H 1.09000 * 109.88237 * 267.09248 * 23 22 21 39 39 H 1.08996 * 110.00177 * 146.00749 * 23 22 21 40 40 H 1.07996 * 120.06097 * 0.02765 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 8 1.5308 -4.8996 -0.0011 12 6 2.2710 -6.0394 -0.0018 13 6 3.6573 -5.9671 -0.0012 14 6 4.4114 -7.1250 -0.0013 15 6 3.7885 -8.3581 -0.0014 16 6 2.4015 -8.4367 -0.0005 17 7 1.7717 -9.6832 0.0000 18 6 2.5736 -10.9092 -0.0011 19 1 3.4733 -10.7759 0.5997 20 6 1.7396 -12.1028 0.5245 21 6 1.2699 -12.7749 -0.7908 22 8 2.4056 -12.6255 -1.6696 23 6 2.9421 -11.3114 -1.4423 24 6 1.6424 -7.2743 0.0035 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5568 -0.8903 27 1 0.6247 -2.5571 0.8897 28 1 2.8720 -3.6043 -0.8905 29 1 2.8720 -3.6043 0.8894 30 1 4.1471 -5.0046 -0.0008 31 1 5.4898 -7.0657 -0.0014 32 1 4.3803 -9.2616 -0.0019 33 1 0.8031 -9.7372 0.0010 34 1 2.3592 -12.7828 1.1091 35 1 0.8880 -11.7548 1.1091 36 1 0.4001 -12.2583 -1.1965 37 1 1.0470 -13.8293 -0.6276 38 1 2.5042 -10.6051 -2.1477 39 1 4.0259 -11.3262 -1.5574 40 1 0.5640 -7.3323 0.0076 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109431125.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:30 Heat of formation + Delta-G solvation = -63.761557 kcal Electronic energy + Delta-G solvation = -20454.554983 eV Core-core repulsion = 17234.171733 eV Total energy + Delta-G solvation = -3220.383250 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.25492 -39.43027 -37.51409 -34.96547 -33.34516 -31.67157 -30.80436 -29.71020 -28.79047 -27.82034 -24.99606 -23.24401 -22.73406 -22.26589 -20.91449 -20.31370 -18.22326 -16.94271 -16.76050 -16.19645 -15.92837 -15.49977 -15.33174 -15.25494 -15.15738 -14.66840 -14.29540 -13.49891 -13.35410 -13.25387 -12.74137 -12.42802 -12.32416 -12.13028 -11.87116 -11.67301 -11.52792 -11.41341 -11.10932 -10.92349 -10.72954 -10.45441 -10.10369 -10.04103 -9.75031 -9.63939 -9.27352 -8.44935 -7.99308 -7.40994 -6.09824 -4.14194 1.67356 1.81676 3.06734 3.27016 3.34162 3.37976 3.59570 3.96676 4.01612 4.12436 4.42733 4.43076 4.54638 4.76731 4.84698 5.05488 5.23998 5.26381 5.26728 5.30661 5.40521 5.45394 5.51142 5.53303 5.62448 5.74825 6.06844 6.07631 6.07897 6.32498 6.44583 6.59955 6.64589 6.71498 6.85756 7.30891 7.51023 7.58397 7.65501 7.83687 8.10332 8.25269 8.91755 9.50120 11.01866 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.048728 B = 0.002613 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.485156 B =10714.071111 C =11042.066707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.525 4.525 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.066 3.934 11 O -0.316 6.316 12 C 0.188 3.812 13 C -0.262 4.262 14 C -0.036 4.036 15 C -0.245 4.245 16 C 0.244 3.756 17 N -0.741 5.741 18 C 0.122 3.878 19 H 0.096 0.904 20 C -0.163 4.163 21 C 0.045 3.955 22 O -0.378 6.378 23 C 0.029 3.971 24 C -0.236 4.236 25 H 0.263 0.737 26 H 0.027 0.973 27 H 0.027 0.973 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.127 0.873 31 H 0.119 0.881 32 H 0.115 0.885 33 H 0.399 0.601 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.061 0.939 37 H 0.094 0.906 38 H 0.068 0.932 39 H 0.088 0.912 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.289 -24.342 0.617 24.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.563 4.563 8 H 0.077 0.923 9 C -0.013 4.013 10 C -0.008 4.008 11 O -0.229 6.229 12 C 0.140 3.860 13 C -0.282 4.282 14 C -0.055 4.055 15 C -0.267 4.267 16 C 0.142 3.858 17 N -0.372 5.372 18 C 0.015 3.985 19 H 0.114 0.886 20 C -0.201 4.201 21 C -0.032 4.032 22 O -0.297 6.297 23 C -0.050 4.050 24 C -0.259 4.259 25 H 0.072 0.928 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.145 0.855 31 H 0.137 0.863 32 H 0.133 0.867 33 H 0.234 0.766 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.112 0.888 38 H 0.086 0.914 39 H 0.107 0.893 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.143 -24.468 0.468 25.007 hybrid contribution 0.188 1.217 0.143 1.240 sum 5.331 -23.251 0.611 23.862 Atomic orbital electron populations 1.69987 1.06109 1.26844 1.49891 1.24997 0.94904 0.99403 0.94949 0.86432 0.79999 0.83260 0.77705 1.19624 1.20845 1.20846 1.21016 0.93101 0.90198 1.51983 0.92287 1.19137 0.94212 0.89095 0.98833 1.23324 0.97001 0.80674 0.99779 1.86152 1.36771 1.13318 1.86632 1.18828 0.89874 0.86850 0.90465 1.21175 0.93005 0.99684 1.14342 1.20629 0.99061 0.91422 0.94407 1.20398 0.92189 0.97895 1.16212 1.17340 0.91542 0.84431 0.92479 1.44611 1.07831 1.01657 1.83119 1.22179 0.95564 0.84666 0.96048 0.88581 1.23411 1.01013 0.97038 0.98613 1.23576 0.89636 1.01557 0.88395 1.88892 1.45264 1.32961 1.62546 1.23869 0.99835 0.84851 0.96410 1.19664 0.99658 0.88867 1.17685 0.92775 0.95421 0.95434 0.93061 0.93055 0.85500 0.86265 0.86700 0.76553 0.89140 0.89303 0.92076 0.88760 0.91358 0.89340 0.85728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.64 5.34 -27.88 -0.15 0.50 16 10 C 0.07 1.44 4.68 37.16 0.17 1.61 16 11 O -0.32 -6.63 10.13 -19.43 -0.20 -6.82 16 12 C 0.19 3.35 6.68 -39.25 -0.26 3.08 16 13 C -0.26 -4.19 9.04 -39.39 -0.36 -4.55 16 14 C -0.04 -0.48 10.03 -39.63 -0.40 -0.88 16 15 C -0.24 -3.00 9.22 -39.36 -0.36 -3.37 16 16 C 0.24 3.10 6.65 -83.82 -0.56 2.54 16 17 N -0.74 -7.04 5.19 -50.71 -0.26 -7.30 16 18 C 0.12 0.95 3.00 -66.40 -0.20 0.75 16 19 H 0.10 0.73 6.61 -51.93 -0.34 0.39 16 20 C -0.16 -0.96 6.78 -24.72 -0.17 -1.13 16 21 C 0.05 0.30 7.72 38.21 0.29 0.60 16 22 O -0.38 -3.68 11.52 -35.23 -0.41 -4.09 16 23 C 0.03 0.25 7.50 37.73 0.28 0.53 16 24 C -0.24 -3.61 9.83 -39.24 -0.39 -3.99 16 25 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 1.06 7.66 -51.93 -0.40 0.67 16 29 H 0.05 1.06 7.66 -51.93 -0.40 0.67 16 30 H 0.13 2.02 6.29 -52.49 -0.33 1.69 16 31 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 32 H 0.12 1.14 6.28 -52.49 -0.33 0.81 16 33 H 0.40 3.32 8.54 -40.82 -0.35 2.98 16 34 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.46 7.96 -51.93 -0.41 0.05 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.68 7.93 -51.93 -0.41 0.27 16 39 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 331.97 15.07 5.00 5.00 Total: -1.00 -31.32 331.97 -8.54 -39.86 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -5.90 Total: 0.62 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: -2.50 Total: -17.72 kcal Atomic # 7 Polarization: -33.63 SS G_CDS: 0.47 Total: -33.16 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: -0.60 Total: -10.91 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.32 -8.54 -39.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109431125.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.904 kcal (2) G-P(sol) polarization free energy of solvation -31.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds