Wall clock time and date at job start Mon Mar 30 2020 01:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48500 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46942 * 300.00690 * 3 2 1 6 6 H 1.48504 * 109.46979 * 60.00603 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 O 1.42903 * 109.46726 * 180.02562 * 10 9 7 12 12 C 1.35901 * 116.99838 * 179.97438 * 11 10 9 13 13 C 1.38810 * 120.01568 * 0.02562 * 12 11 10 14 14 C 1.38181 * 120.09097 * 179.97438 * 13 12 11 15 15 C 1.38150 * 120.12637 * 359.97438 * 14 13 12 16 16 C 1.38925 * 120.03978 * 359.95739 * 15 14 13 17 17 N 1.39663 * 120.04823 * 180.02562 * 16 15 14 18 18 C 1.46495 * 120.00254 * 359.97438 * 17 16 15 19 19 H 1.09000 * 110.43522 * 36.09138 * 18 17 16 20 20 C 1.54808 * 110.49036 * 158.77920 * 18 17 16 21 21 C 1.55000 * 102.09353 * 97.79861 * 20 18 17 22 22 O 1.44376 * 103.48912 * 37.02405 * 21 20 18 23 23 C 1.43746 * 106.97683 * 319.93801 * 22 21 20 24 24 C 1.38573 * 120.01879 * 179.72016 * 12 11 10 25 25 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 27 27 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 28 28 H 1.09001 * 109.47194 * 299.99742 * 10 9 7 29 29 H 1.08992 * 109.47399 * 59.99914 * 10 9 7 30 30 H 1.07997 * 119.95828 * 359.97438 * 13 12 11 31 31 H 1.08008 * 119.93169 * 179.97438 * 14 13 12 32 32 H 1.08001 * 119.98079 * 179.97438 * 15 14 13 33 33 H 0.97004 * 119.99921 * 179.97438 * 17 16 15 34 34 H 1.09004 * 110.90896 * 215.99454 * 20 18 17 35 35 H 1.08997 * 110.90793 * 339.60135 * 20 18 17 36 36 H 1.08997 * 110.61651 * 278.52427 * 21 20 18 37 37 H 1.08996 * 110.75600 * 155.58952 * 21 20 18 38 38 H 1.09000 * 109.88237 * 267.09248 * 23 22 21 39 39 H 1.08996 * 110.00177 * 146.00749 * 23 22 21 40 40 H 1.07996 * 120.06097 * 0.02765 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 8 1.5308 -4.8996 -0.0011 12 6 2.2710 -6.0394 -0.0018 13 6 3.6573 -5.9671 -0.0012 14 6 4.4114 -7.1250 -0.0013 15 6 3.7885 -8.3581 -0.0014 16 6 2.4015 -8.4367 -0.0005 17 7 1.7717 -9.6832 0.0000 18 6 2.5736 -10.9092 -0.0011 19 1 3.4733 -10.7759 0.5997 20 6 1.7396 -12.1028 0.5245 21 6 1.2699 -12.7749 -0.7908 22 8 2.4056 -12.6255 -1.6696 23 6 2.9421 -11.3114 -1.4423 24 6 1.6424 -7.2743 0.0035 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5568 -0.8903 27 1 0.6247 -2.5571 0.8897 28 1 2.8720 -3.6043 -0.8905 29 1 2.8720 -3.6043 0.8894 30 1 4.1471 -5.0046 -0.0008 31 1 5.4898 -7.0657 -0.0014 32 1 4.3803 -9.2616 -0.0019 33 1 0.8031 -9.7372 0.0010 34 1 2.3592 -12.7828 1.1091 35 1 0.8880 -11.7548 1.1091 36 1 0.4001 -12.2583 -1.1965 37 1 1.0470 -13.8293 -0.6276 38 1 2.5042 -10.6051 -2.1477 39 1 4.0259 -11.3262 -1.5574 40 1 0.5640 -7.3323 0.0076 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109431125.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:29 Heat of formation + Delta-G solvation = -83.816599 kcal Electronic energy + Delta-G solvation = -20455.424635 eV Core-core repulsion = 17234.171733 eV Total energy + Delta-G solvation = -3221.252902 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.20135 -40.44700 -38.72350 -35.96725 -35.37638 -32.62382 -32.35267 -30.86152 -29.80440 -28.74029 -26.93920 -24.03848 -23.78257 -23.51804 -22.19110 -21.44988 -19.45740 -18.41504 -17.65986 -17.42310 -16.99551 -16.91244 -16.57998 -16.35642 -16.22690 -16.09439 -15.36667 -14.49973 -14.48413 -14.33414 -14.14917 -13.92246 -13.68597 -13.19675 -12.97145 -12.76626 -12.68139 -12.55598 -12.51069 -12.19832 -12.04476 -11.86800 -11.64969 -11.54011 -11.36760 -10.89173 -10.72275 -10.62878 -9.23975 -8.40011 -8.26923 -6.40490 0.55981 0.66959 1.41077 1.42150 1.55762 2.11425 2.37921 2.69349 2.93185 3.04200 3.07549 3.50129 3.86892 3.95619 3.99366 4.18914 4.24795 4.28666 4.28929 4.32078 4.37791 4.50134 4.65971 4.70910 4.74970 4.78460 4.85921 4.90312 5.00249 5.05920 5.27881 5.32635 5.47059 5.51340 5.62829 5.66230 5.74493 5.84345 6.07105 6.37043 6.60584 6.74409 6.75246 7.29673 8.86580 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.048728 B = 0.002613 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.485156 B =10714.071111 C =11042.066707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.977 3.023 4 H -0.257 1.257 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.544 4.544 8 H 0.071 0.929 9 C 0.028 3.972 10 C 0.087 3.913 11 O -0.343 6.343 12 C 0.151 3.849 13 C -0.280 4.280 14 C -0.032 4.032 15 C -0.236 4.236 16 C 0.252 3.748 17 N -0.731 5.731 18 C 0.120 3.880 19 H 0.107 0.893 20 C -0.153 4.153 21 C 0.038 3.962 22 O -0.400 6.400 23 C 0.029 3.971 24 C -0.250 4.250 25 H 0.267 0.733 26 H -0.002 1.002 27 H -0.002 1.002 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.122 0.878 31 H 0.151 0.849 32 H 0.147 0.853 33 H 0.405 0.595 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.060 0.940 37 H 0.110 0.890 38 H 0.051 0.949 39 H 0.099 0.901 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.418 -25.945 1.067 27.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.800 3.200 4 H -0.181 1.181 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.582 4.582 8 H 0.089 0.911 9 C -0.010 4.010 10 C 0.012 3.988 11 O -0.257 6.257 12 C 0.105 3.895 13 C -0.300 4.300 14 C -0.050 4.050 15 C -0.258 4.258 16 C 0.148 3.852 17 N -0.361 5.361 18 C 0.014 3.986 19 H 0.125 0.875 20 C -0.191 4.191 21 C -0.038 4.038 22 O -0.319 6.319 23 C -0.049 4.049 24 C -0.274 4.274 25 H 0.076 0.924 26 H 0.016 0.984 27 H 0.017 0.983 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.139 0.861 31 H 0.168 0.832 32 H 0.164 0.836 33 H 0.241 0.759 34 H 0.124 0.876 35 H 0.117 0.883 36 H 0.079 0.921 37 H 0.128 0.872 38 H 0.069 0.931 39 H 0.117 0.883 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.268 -26.131 0.919 27.138 hybrid contribution -0.518 1.475 -0.016 1.563 sum 6.751 -24.656 0.903 25.579 Atomic orbital electron populations 1.70129 1.08070 1.28174 1.50756 1.26059 0.95839 1.03737 0.94166 0.85222 0.79052 0.77800 0.77891 1.18100 1.20222 1.20179 1.21427 0.93833 0.90990 1.51953 0.91115 1.18979 0.94569 0.91465 0.95946 1.22839 0.95300 0.80126 1.00500 1.86057 1.37723 1.13911 1.87991 1.19166 0.90867 0.86212 0.93295 1.21247 0.92365 1.00727 1.15703 1.20979 1.00508 0.90664 0.92867 1.20782 0.92090 0.98794 1.14158 1.17400 0.91900 0.84743 0.91151 1.44724 1.08433 1.01225 1.81736 1.22349 0.96120 0.84283 0.95852 0.87473 1.23400 1.01256 0.96170 0.98300 1.23770 0.88841 1.02793 0.88364 1.88876 1.46260 1.33219 1.63545 1.23859 1.00331 0.84346 0.96406 1.19781 0.99956 0.89103 1.18529 0.92435 0.98390 0.98349 0.92281 0.92203 0.86053 0.83182 0.83557 0.75900 0.87637 0.88337 0.92146 0.87168 0.93082 0.88298 0.85943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.26 13.29 21.45 0.28 -56.97 16 2 C 0.00 0.02 5.46 84.65 0.46 0.48 16 3 Si 0.98 43.85 29.54 68.60 2.03 45.88 16 4 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 5 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 7 C -0.54 -31.15 9.11 25.60 0.23 -30.91 16 8 H 0.07 3.79 7.74 -2.91 -0.02 3.76 16 9 C 0.03 1.54 5.34 29.85 0.16 1.70 16 10 C 0.09 3.92 4.68 71.98 0.34 4.26 16 11 O -0.34 -15.13 10.13 -92.44 -0.94 -16.06 16 12 C 0.15 5.51 6.68 22.49 0.15 5.66 16 13 C -0.28 -8.87 9.04 22.39 0.20 -8.67 16 14 C -0.03 -0.76 10.03 22.24 0.22 -0.54 16 15 C -0.24 -5.09 9.22 22.41 0.21 -4.89 16 16 C 0.25 5.98 6.65 38.20 0.25 6.24 16 17 N -0.73 -12.30 5.19 -314.36 -1.63 -13.93 16 18 C 0.12 1.50 3.00 45.98 0.14 1.64 16 19 H 0.11 1.18 6.61 -2.39 -0.02 1.16 16 20 C -0.15 -1.33 6.78 31.90 0.22 -1.12 16 21 C 0.04 0.43 7.72 72.67 0.56 0.99 16 22 O -0.40 -7.02 11.52 -148.98 -1.72 -8.74 16 23 C 0.03 0.44 7.50 72.36 0.54 0.98 16 24 C -0.25 -7.72 9.83 22.49 0.22 -7.49 16 25 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 26 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 27 H 0.00 -0.12 8.14 -2.39 -0.02 -0.13 16 28 H 0.06 2.53 7.66 -2.39 -0.02 2.51 16 29 H 0.06 2.56 7.66 -2.39 -0.02 2.54 16 30 H 0.12 3.87 6.29 -2.91 -0.02 3.86 16 31 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 32 H 0.15 2.24 6.28 -2.91 -0.02 2.22 16 33 H 0.40 6.05 8.54 -92.71 -0.79 5.26 16 34 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.10 0.71 7.96 -2.39 -0.02 0.69 16 36 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.05 0.95 7.93 -2.39 -0.02 0.93 16 39 H 0.10 1.27 8.14 -2.39 -0.02 1.26 16 40 H 0.12 3.67 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -69.80 331.97 2.18 -67.62 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 0.25 Total: 13.88 kcal Atomic # 6 Polarization: -35.58 SS G_CDS: 3.91 Total: -31.67 kcal Atomic # 7 Polarization: -69.56 SS G_CDS: -1.35 Total: -70.91 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -2.65 Total: -24.80 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -69.80 2.18 -67.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109431125.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.194 kcal (2) G-P(sol) polarization free energy of solvation -69.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds