Wall clock time and date at job start Mon Mar 30 2020 01:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86799 * 119.99915 * 2 1 4 4 H 1.48500 * 109.47048 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47375 * 300.00192 * 3 2 1 6 6 H 1.48506 * 109.46808 * 60.00401 * 3 2 1 7 7 C 1.38653 * 119.99726 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99765 * 179.97438 * 7 2 1 9 9 O 1.34831 * 120.00325 * 359.97438 * 7 2 1 10 10 C 1.35753 * 116.99766 * 185.05796 * 9 7 2 11 11 C 1.38880 * 120.06310 * 174.19245 * 10 9 7 12 12 C 1.38102 * 119.92774 * 179.76605 * 11 10 9 13 13 C 1.38304 * 120.06899 * 0.48540 * 12 11 10 14 14 C 1.50701 * 119.93110 * 179.74393 * 13 12 11 15 15 N 1.46896 * 109.47050 * 270.01948 * 14 13 12 16 16 C 1.46903 * 110.99987 * 179.97438 * 15 14 13 17 17 C 1.52997 * 109.47503 * 180.02562 * 16 15 14 18 18 O 1.42903 * 112.84847 * 53.80157 * 17 16 15 19 19 C 1.53781 * 113.61346 * 282.50159 * 17 16 15 20 20 C 1.53780 * 87.08156 * 220.01700 * 19 17 16 21 21 C 1.53779 * 113.61586 * 185.00414 * 17 16 15 22 22 C 1.38302 * 120.13789 * 359.76939 * 13 12 11 23 23 C 1.38105 * 120.06695 * 359.97438 * 22 13 12 24 24 H 0.97003 * 120.00171 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.03810 * 359.97438 * 11 10 9 26 26 H 1.07994 * 119.96815 * 180.22560 * 12 11 10 27 27 H 1.08992 * 109.47296 * 30.02375 * 14 13 12 28 28 H 1.09000 * 109.46833 * 150.02416 * 14 13 12 29 29 H 1.00895 * 111.00274 * 303.95717 * 15 14 13 30 30 H 1.09003 * 109.46979 * 300.00404 * 16 15 14 31 31 H 1.09004 * 109.47160 * 60.00198 * 16 15 14 32 32 H 0.96695 * 114.00166 * 309.67328 * 18 17 16 33 33 H 1.08999 * 113.61475 * 334.56491 * 19 17 16 34 34 H 1.08998 * 113.61732 * 105.46782 * 19 17 16 35 35 H 1.09000 * 113.61208 * 270.88305 * 20 19 17 36 36 H 1.09000 * 113.61909 * 139.97615 * 20 19 17 37 37 H 1.09004 * 113.61216 * 254.52469 * 21 17 16 38 38 H 1.08993 * 113.61605 * 25.42841 * 21 17 16 39 39 H 1.08001 * 119.96675 * 179.97438 * 22 13 12 40 40 H 1.07996 * 120.03107 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 0.0006 5 1 1.8908 2.3965 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3685 -0.0005 10 6 2.0700 -3.5046 0.1056 11 6 1.4366 -4.7339 0.2335 12 6 2.1874 -5.8885 0.3364 13 6 3.5687 -5.8204 0.3222 14 6 4.3850 -7.0816 0.4405 15 7 4.6573 -7.3576 1.8573 16 6 5.4524 -8.5831 2.0117 17 6 5.7147 -8.8373 3.4974 18 8 4.5170 -8.8591 4.2765 19 6 6.8203 -7.9470 4.0888 20 6 7.2892 -9.1848 4.8718 21 6 6.6444 -10.0331 3.7631 22 6 4.2024 -4.5972 0.2002 23 6 3.4571 -3.4396 0.0917 24 1 -0.4850 0.8401 0.0004 25 1 0.3580 -4.7873 0.2491 26 1 1.6955 -6.8451 0.4322 27 1 3.8311 -7.9148 0.0080 28 1 5.3272 -6.9559 -0.0928 29 1 5.1133 -6.5725 2.2975 30 1 4.9055 -9.4265 1.5901 31 1 6.4021 -8.4683 1.4891 32 1 3.9391 -8.0976 4.1309 33 1 7.5421 -7.5984 3.3502 34 1 6.4427 -7.1458 4.7240 35 1 6.8067 -9.2956 5.8429 36 1 8.3735 -9.2843 4.9229 37 1 6.1246 -10.9160 4.1354 38 1 7.3179 -10.2549 2.9354 39 1 5.2812 -4.5472 0.1899 40 1 3.9526 -2.4846 -0.0031 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127380961.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:06 Heat of formation + Delta-G solvation = -33.385109 kcal Electronic energy + Delta-G solvation = -20629.098677 eV Core-core repulsion = 17410.032648 eV Total energy + Delta-G solvation = -3219.066029 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.91203 -39.05727 -37.01225 -35.10649 -34.56509 -32.32101 -30.26721 -30.09237 -27.20121 -26.00398 -25.42136 -23.84712 -22.30273 -21.94475 -20.45202 -19.79385 -18.00552 -17.23231 -16.70221 -15.72103 -15.54823 -15.25866 -14.82032 -14.55381 -14.48481 -14.08434 -13.68233 -13.61268 -13.38513 -12.92007 -12.71412 -12.61987 -12.31487 -12.19169 -11.74286 -11.49917 -11.40111 -11.28067 -11.10937 -10.87864 -10.73341 -10.63017 -10.44052 -10.26352 -9.73826 -9.34910 -8.86259 -8.50103 -8.18787 -7.20649 -6.46957 -4.05864 2.20908 2.25625 3.10519 3.12202 3.17726 3.92451 3.94673 4.02949 4.31426 4.53737 4.59913 4.66802 4.78512 5.08038 5.18286 5.24056 5.28702 5.36136 5.40264 5.44042 5.48587 5.58014 5.66221 5.70828 5.77667 5.82464 5.88194 6.02048 6.11891 6.20055 6.41248 6.69052 6.86274 6.94258 7.04081 7.24308 7.29211 7.40102 7.43509 7.66977 7.81360 7.98145 8.98770 9.68996 10.71144 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028877 B = 0.003044 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.394979 B = 9196.452779 C = 9601.891138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.392 4.392 8 H 0.092 0.908 9 O -0.178 6.178 10 C 0.157 3.843 11 C -0.194 4.194 12 C -0.051 4.051 13 C -0.187 4.187 14 C 0.120 3.880 15 N -0.687 5.687 16 C 0.038 3.962 17 C 0.115 3.885 18 O -0.542 6.542 19 C -0.171 4.171 20 C -0.134 4.134 21 C -0.129 4.129 22 C -0.065 4.065 23 C -0.235 4.235 24 H 0.270 0.730 25 H 0.117 0.883 26 H 0.112 0.888 27 H 0.071 0.929 28 H 0.028 0.972 29 H 0.341 0.659 30 H 0.077 0.923 31 H 0.037 0.963 32 H 0.390 0.610 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.038 -14.975 4.728 20.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.468 4.468 8 H 0.110 0.890 9 O -0.081 6.081 10 C 0.103 3.897 11 C -0.214 4.214 12 C -0.070 4.070 13 C -0.188 4.188 14 C -0.008 4.008 15 N -0.318 5.318 16 C -0.091 4.091 17 C 0.073 3.927 18 O -0.349 6.349 19 C -0.209 4.209 20 C -0.171 4.171 21 C -0.167 4.167 22 C -0.084 4.084 23 C -0.254 4.254 24 H 0.080 0.920 25 H 0.135 0.865 26 H 0.130 0.870 27 H 0.089 0.911 28 H 0.046 0.954 29 H 0.160 0.840 30 H 0.096 0.904 31 H 0.055 0.945 32 H 0.240 0.760 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.109 0.891 39 H 0.120 0.880 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 12.252 -15.631 5.010 20.483 hybrid contribution 1.163 1.756 -0.556 2.178 sum 13.415 -13.875 4.455 19.807 Atomic orbital electron populations 1.70047 1.05966 1.27591 1.46087 1.25295 0.95842 0.98848 0.96550 0.85647 0.79111 0.80385 0.78278 1.19125 1.20135 1.20110 1.21372 0.91805 0.80826 1.52804 0.89039 1.83982 1.34386 1.11485 1.78244 1.19405 0.90270 0.88068 0.92002 1.20237 0.99620 0.90363 1.11138 1.20469 0.92812 0.96689 0.97052 1.19097 0.93699 0.93355 1.12683 1.20600 0.97066 0.95797 0.87308 1.60477 1.49892 1.05564 1.15885 1.22543 0.96370 0.94451 0.95770 1.22128 0.84917 0.96613 0.89016 1.86348 1.32374 1.50341 1.65820 1.23649 0.99051 0.97803 1.00370 1.22728 1.00100 0.96096 0.98202 1.23015 0.97224 0.97201 0.99213 1.20583 0.97970 0.91966 0.97912 1.21116 0.93838 0.98795 1.11667 0.92040 0.86534 0.87021 0.91059 0.95392 0.84047 0.90419 0.94488 0.76004 0.89792 0.90760 0.89826 0.91566 0.90575 0.89123 0.88004 0.85650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.24 13.67 55.48 0.76 -24.48 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 20.40 29.55 -169.99 -5.02 15.38 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.39 -10.90 9.49 30.89 0.29 -10.61 16 8 H 0.09 2.36 5.20 -52.48 -0.27 2.08 16 9 O -0.18 -5.06 9.76 0.04 0.00 -5.06 16 10 C 0.16 3.75 6.65 -39.11 -0.26 3.49 16 11 C -0.19 -4.08 9.99 -39.39 -0.39 -4.48 16 12 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 13 C -0.19 -3.07 5.40 -104.57 -0.56 -3.63 16 14 C 0.12 1.55 5.81 -4.98 -0.03 1.52 16 15 N -0.69 -7.93 5.78 -115.06 -0.67 -8.60 16 16 C 0.04 0.38 5.28 -3.82 -0.02 0.36 16 17 C 0.12 1.13 1.49 -89.81 -0.13 0.99 16 18 O -0.54 -6.36 13.41 -35.23 -0.47 -6.84 16 19 C -0.17 -1.52 7.27 -25.92 -0.19 -1.70 16 20 C -0.13 -1.11 8.02 -25.92 -0.21 -1.32 16 21 C -0.13 -1.09 7.47 -25.92 -0.19 -1.29 16 22 C -0.07 -1.16 9.69 -39.61 -0.38 -1.54 16 23 C -0.23 -5.02 9.17 -39.40 -0.36 -5.38 16 24 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 25 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 26 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 27 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 28 H 0.03 0.34 8.08 -51.93 -0.42 -0.08 16 29 H 0.34 3.97 8.54 -39.29 -0.34 3.63 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.04 0.34 8.05 -51.93 -0.42 -0.08 16 32 H 0.39 4.18 8.38 45.56 0.38 4.56 16 33 H 0.08 0.68 8.04 -51.93 -0.42 0.26 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.09 0.63 8.10 -51.93 -0.42 0.21 16 39 H 0.10 1.53 8.06 -52.49 -0.42 1.11 16 40 H 0.13 2.70 5.64 -52.49 -0.30 2.40 16 LS Contribution 335.71 15.07 5.06 5.06 Total: -1.00 -30.13 335.71 -8.40 -38.53 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -5.14 Total: 9.91 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: -2.92 Total: -23.91 kcal Atomic # 7 Polarization: -33.17 SS G_CDS: 0.09 Total: -33.08 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: -0.47 Total: -11.90 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.13 -8.40 -38.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127380961.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.144 kcal (2) G-P(sol) polarization free energy of solvation -30.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds