Wall clock time and date at job start Mon Mar 30 2020 01:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86799 * 119.99915 * 2 1 4 4 H 1.48500 * 109.47048 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47375 * 300.00192 * 3 2 1 6 6 H 1.48506 * 109.46808 * 60.00401 * 3 2 1 7 7 C 1.38653 * 119.99726 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99765 * 179.97438 * 7 2 1 9 9 O 1.34831 * 120.00325 * 359.97438 * 7 2 1 10 10 C 1.35753 * 116.99766 * 185.05796 * 9 7 2 11 11 C 1.38880 * 120.06310 * 174.19245 * 10 9 7 12 12 C 1.38102 * 119.92774 * 179.76605 * 11 10 9 13 13 C 1.38304 * 120.06899 * 0.48540 * 12 11 10 14 14 C 1.50701 * 119.93110 * 179.74393 * 13 12 11 15 15 N 1.46896 * 109.47050 * 270.01948 * 14 13 12 16 16 C 1.46903 * 110.99987 * 179.97438 * 15 14 13 17 17 C 1.52997 * 109.47503 * 180.02562 * 16 15 14 18 18 O 1.42903 * 112.84847 * 53.80157 * 17 16 15 19 19 C 1.53781 * 113.61346 * 282.50159 * 17 16 15 20 20 C 1.53780 * 87.08156 * 220.01700 * 19 17 16 21 21 C 1.53779 * 113.61586 * 185.00414 * 17 16 15 22 22 C 1.38302 * 120.13789 * 359.76939 * 13 12 11 23 23 C 1.38105 * 120.06695 * 359.97438 * 22 13 12 24 24 H 0.97003 * 120.00171 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.03810 * 359.97438 * 11 10 9 26 26 H 1.07994 * 119.96815 * 180.22560 * 12 11 10 27 27 H 1.08992 * 109.47296 * 30.02375 * 14 13 12 28 28 H 1.09000 * 109.46833 * 150.02416 * 14 13 12 29 29 H 1.00895 * 111.00274 * 303.95717 * 15 14 13 30 30 H 1.09003 * 109.46979 * 300.00404 * 16 15 14 31 31 H 1.09004 * 109.47160 * 60.00198 * 16 15 14 32 32 H 0.96695 * 114.00166 * 309.67328 * 18 17 16 33 33 H 1.08999 * 113.61475 * 334.56491 * 19 17 16 34 34 H 1.08998 * 113.61732 * 105.46782 * 19 17 16 35 35 H 1.09000 * 113.61208 * 270.88305 * 20 19 17 36 36 H 1.09000 * 113.61909 * 139.97615 * 20 19 17 37 37 H 1.09004 * 113.61216 * 254.52469 * 21 17 16 38 38 H 1.08993 * 113.61605 * 25.42841 * 21 17 16 39 39 H 1.08001 * 119.96675 * 179.97438 * 22 13 12 40 40 H 1.07996 * 120.03107 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 0.0006 5 1 1.8908 2.3965 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3685 -0.0005 10 6 2.0700 -3.5046 0.1056 11 6 1.4366 -4.7339 0.2335 12 6 2.1874 -5.8885 0.3364 13 6 3.5687 -5.8204 0.3222 14 6 4.3850 -7.0816 0.4405 15 7 4.6573 -7.3576 1.8573 16 6 5.4524 -8.5831 2.0117 17 6 5.7147 -8.8373 3.4974 18 8 4.5170 -8.8591 4.2765 19 6 6.8203 -7.9470 4.0888 20 6 7.2892 -9.1848 4.8718 21 6 6.6444 -10.0331 3.7631 22 6 4.2024 -4.5972 0.2002 23 6 3.4571 -3.4396 0.0917 24 1 -0.4850 0.8401 0.0004 25 1 0.3580 -4.7873 0.2491 26 1 1.6955 -6.8451 0.4322 27 1 3.8311 -7.9148 0.0080 28 1 5.3272 -6.9559 -0.0928 29 1 5.1133 -6.5725 2.2975 30 1 4.9055 -9.4265 1.5901 31 1 6.4021 -8.4683 1.4891 32 1 3.9391 -8.0976 4.1309 33 1 7.5421 -7.5984 3.3502 34 1 6.4427 -7.1458 4.7240 35 1 6.8067 -9.2956 5.8429 36 1 8.3735 -9.2843 4.9229 37 1 6.1246 -10.9160 4.1354 38 1 7.3179 -10.2549 2.9354 39 1 5.2812 -4.5472 0.1899 40 1 3.9526 -2.4846 -0.0031 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127380961.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:06 Heat of formation + Delta-G solvation = -54.731455 kcal Electronic energy + Delta-G solvation = -20630.024324 eV Core-core repulsion = 17410.032648 eV Total energy + Delta-G solvation = -3219.991676 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.84491 -40.55321 -38.59172 -36.21466 -35.40833 -34.27492 -31.80086 -31.49641 -28.33791 -27.30323 -26.64212 -25.02604 -23.61026 -23.03484 -21.96156 -20.51881 -19.84228 -18.88514 -17.77803 -16.62568 -16.58091 -16.28596 -16.26639 -15.84427 -15.74104 -15.51653 -15.29143 -15.08376 -14.39365 -14.31019 -14.08298 -13.65089 -13.56263 -13.26087 -13.08867 -12.97209 -12.49299 -12.47920 -12.24127 -12.16615 -12.09675 -11.96975 -11.75557 -11.16317 -11.05777 -10.80021 -10.49814 -9.76512 -9.39903 -8.89752 -8.47159 -6.15338 0.61906 0.68444 1.35042 1.43377 1.53414 2.17628 2.77813 3.08318 3.20992 3.37719 3.53892 3.62579 3.88456 3.92399 4.01709 4.07518 4.08836 4.23139 4.43413 4.56003 4.60337 4.64685 4.75964 4.79695 4.82169 4.83236 4.87028 5.04252 5.10692 5.13135 5.16048 5.32247 5.32920 5.46001 5.58778 5.72686 5.81984 6.03004 6.03567 6.25578 6.42583 6.87664 6.97801 7.79445 8.76524 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028877 B = 0.003044 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.394979 B = 9196.452779 C = 9601.891138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 1.019 2.981 4 H -0.250 1.250 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.412 4.412 8 H 0.102 0.898 9 O -0.234 6.234 10 C 0.114 3.886 11 C -0.207 4.207 12 C -0.047 4.047 13 C -0.158 4.158 14 C 0.124 3.876 15 N -0.692 5.692 16 C 0.045 3.955 17 C 0.106 3.894 18 O -0.560 6.560 19 C -0.168 4.168 20 C -0.134 4.134 21 C -0.126 4.126 22 C -0.061 4.061 23 C -0.243 4.243 24 H 0.272 0.728 25 H 0.110 0.890 26 H 0.143 0.857 27 H 0.083 0.917 28 H 0.047 0.953 29 H 0.343 0.657 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.391 0.609 33 H 0.097 0.903 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.111 0.889 39 H 0.139 0.861 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.303 -16.842 4.707 23.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.222 4.222 3 Si 0.838 3.162 4 H -0.174 1.174 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.488 4.488 8 H 0.119 0.881 9 O -0.141 6.141 10 C 0.064 3.936 11 C -0.226 4.226 12 C -0.065 4.065 13 C -0.159 4.159 14 C -0.004 4.004 15 N -0.324 5.324 16 C -0.084 4.084 17 C 0.064 3.936 18 O -0.368 6.368 19 C -0.206 4.206 20 C -0.172 4.172 21 C -0.164 4.164 22 C -0.080 4.080 23 C -0.263 4.263 24 H 0.081 0.919 25 H 0.128 0.872 26 H 0.161 0.839 27 H 0.102 0.898 28 H 0.066 0.934 29 H 0.161 0.839 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.241 0.759 33 H 0.116 0.884 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.129 0.871 39 H 0.157 0.843 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 15.555 -17.563 4.995 23.987 hybrid contribution 0.278 1.943 -0.503 2.026 sum 15.833 -15.620 4.492 22.690 Atomic orbital electron populations 1.70194 1.08072 1.28722 1.49063 1.26601 0.96847 1.02783 0.95922 0.84522 0.78270 0.74822 0.78540 1.17370 1.19360 1.19395 1.21862 0.92506 0.81443 1.53022 0.88066 1.83946 1.36046 1.12650 1.81467 1.19951 0.91694 0.87886 0.94098 1.20475 0.99896 0.90743 1.11531 1.20844 0.93534 0.96605 0.95547 1.19608 0.93559 0.94697 1.08009 1.20589 0.97410 0.93852 0.88517 1.60371 1.50942 1.06289 1.14818 1.22516 0.96792 0.93284 0.95820 1.22328 0.84567 0.97794 0.88887 1.86342 1.33259 1.50609 1.66547 1.23652 0.98893 0.97521 1.00523 1.22719 1.00987 0.95834 0.97624 1.23081 0.97052 0.96380 0.99862 1.20951 0.99670 0.90951 0.96383 1.21227 0.93005 1.00064 1.11963 0.91860 0.87206 0.83922 0.89850 0.93443 0.83919 0.90595 0.92757 0.75884 0.88445 0.91732 0.91025 0.90025 0.91375 0.87089 0.84333 0.86502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.99 13.67 21.61 0.30 -56.69 16 2 C -0.02 -1.39 5.49 84.83 0.47 -0.92 16 3 Si 1.02 42.86 29.55 68.60 2.03 44.89 16 4 H -0.25 -9.66 7.11 99.48 0.71 -8.96 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 6 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 7 C -0.41 -24.07 9.49 67.92 0.64 -23.43 16 8 H 0.10 5.41 5.20 -2.91 -0.02 5.40 16 9 O -0.23 -14.21 9.76 -22.78 -0.22 -14.43 16 10 C 0.11 5.68 6.65 22.58 0.15 5.83 16 11 C -0.21 -8.85 9.99 22.39 0.22 -8.62 16 12 C -0.05 -1.55 9.69 22.25 0.22 -1.34 16 13 C -0.16 -4.62 5.40 -19.83 -0.11 -4.72 16 14 C 0.12 2.59 5.81 85.56 0.50 3.08 16 15 N -0.69 -13.18 5.78 -517.94 -2.99 -16.18 16 16 C 0.05 0.71 5.28 86.30 0.46 1.16 16 17 C 0.11 1.77 1.49 -10.27 -0.02 1.76 16 18 O -0.56 -12.22 13.41 -148.98 -2.00 -14.22 16 19 C -0.17 -2.51 7.27 31.12 0.23 -2.28 16 20 C -0.13 -1.91 8.02 31.12 0.25 -1.66 16 21 C -0.13 -1.78 7.47 31.12 0.23 -1.54 16 22 C -0.06 -1.99 9.69 22.25 0.22 -1.77 16 23 C -0.24 -10.40 9.17 22.39 0.21 -10.19 16 24 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 25 H 0.11 4.71 8.06 -2.91 -0.02 4.68 16 26 H 0.14 3.86 8.06 -2.91 -0.02 3.83 16 27 H 0.08 1.63 8.08 -2.39 -0.02 1.61 16 28 H 0.05 0.86 8.08 -2.39 -0.02 0.84 16 29 H 0.34 6.59 8.54 -89.70 -0.77 5.83 16 30 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.05 0.70 8.05 -2.39 -0.02 0.68 16 32 H 0.39 7.82 8.38 -74.06 -0.62 7.20 16 33 H 0.10 1.19 8.04 -2.39 -0.02 1.17 16 34 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.11 1.11 8.10 -2.39 -0.02 1.09 16 39 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 40 H 0.12 5.11 5.64 -2.91 -0.02 5.09 16 Total: -1.00 -70.03 335.71 0.44 -69.60 By element: Atomic # 1 Polarization: 32.01 SS G_CDS: -0.33 Total: 31.68 kcal Atomic # 6 Polarization: -48.31 SS G_CDS: 3.66 Total: -44.65 kcal Atomic # 7 Polarization: -70.17 SS G_CDS: -2.70 Total: -72.87 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -2.22 Total: -28.65 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -70.03 0.44 -69.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127380961.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.867 kcal (2) G-P(sol) polarization free energy of solvation -70.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds