Wall clock time and date at job start Mon Mar 30 2020 01:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99942 * 2 1 4 4 H 1.48504 * 109.47240 * 269.99755 * 3 2 1 5 5 H 1.48491 * 109.47206 * 29.99986 * 3 2 1 6 6 H 1.48507 * 109.46854 * 150.00518 * 3 2 1 7 7 C 1.37883 * 119.99599 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00768 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99347 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.46579 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46690 * 179.97438 * 10 9 7 12 12 C 1.53008 * 109.47051 * 180.02562 * 11 10 9 13 13 C 1.50694 * 109.46967 * 180.02562 * 12 11 10 14 14 O 1.21276 * 120.00464 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99932 * 179.97438 * 13 12 11 16 16 O 1.41600 * 120.00395 * 179.97438 * 15 13 12 17 17 C 1.42893 * 113.99989 * 180.02562 * 16 15 13 18 18 C 1.50707 * 109.47070 * 179.97438 * 17 16 15 19 19 C 1.38238 * 119.99792 * 89.99993 * 18 17 16 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00179 * 269.97930 * 18 17 16 24 24 H 0.96996 * 120.00525 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47392 * 60.00547 * 9 7 2 26 26 H 1.09001 * 109.47311 * 299.99637 * 9 7 2 27 27 H 1.08997 * 109.46924 * 60.00723 * 10 9 7 28 28 H 1.08993 * 109.47248 * 300.00171 * 10 9 7 29 29 H 1.09005 * 109.47126 * 60.00210 * 11 10 9 30 30 H 1.09001 * 109.47340 * 299.99847 * 11 10 9 31 31 H 1.09000 * 109.46535 * 60.00245 * 12 11 10 32 32 H 1.08993 * 109.47063 * 300.00383 * 12 11 10 33 33 H 0.97001 * 119.99823 * 0.02562 * 15 13 12 34 34 H 1.09005 * 109.47744 * 60.00324 * 17 16 15 35 35 H 1.09000 * 109.47353 * 299.99523 * 17 16 15 36 36 H 1.08005 * 120.00068 * 359.97438 * 19 18 17 37 37 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 38 38 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 39 39 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 40 40 H 1.07999 * 119.99968 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1295 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 6 4.0214 -2.6367 -0.0010 11 6 5.5514 -2.6366 -0.0022 12 6 6.0615 -4.0792 -0.0028 13 6 7.5684 -4.0791 -0.0033 14 8 8.1749 -3.0289 -0.0029 15 7 8.2424 -5.2463 -0.0033 16 8 9.6584 -5.2464 -0.0044 17 6 10.2395 -6.5518 -0.0049 18 6 11.7419 -6.4329 -0.0067 19 6 12.4323 -6.3781 1.1897 20 6 13.8103 -6.2695 1.1880 21 6 14.4981 -6.2163 -0.0099 22 6 13.8073 -6.2657 -1.2063 23 6 12.4295 -6.3789 -1.2046 24 1 -0.4851 0.8400 -0.0004 25 1 3.8752 -0.6805 0.8889 26 1 3.8745 -0.6801 -0.8912 27 1 3.6578 -3.1506 -0.8908 28 1 3.6584 -3.1503 0.8892 29 1 5.9155 -2.1225 0.8873 30 1 5.9141 -2.1231 -0.8927 31 1 5.6974 -4.5928 -0.8925 32 1 5.6988 -4.5931 0.8874 33 1 7.7573 -6.0864 -0.0033 34 1 9.9173 -7.0928 -0.8946 35 1 9.9186 -7.0927 0.8854 36 1 11.8950 -6.4201 2.1257 37 1 14.3497 -6.2263 2.1227 38 1 15.5748 -6.1319 -0.0111 39 1 14.3442 -6.2197 -2.1422 40 1 11.8902 -6.4225 -2.1393 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000144113684.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:29 Heat of formation + Delta-G solvation = -26.285490 kcal Electronic energy + Delta-G solvation = -19620.486667 eV Core-core repulsion = 16401.728501 eV Total energy + Delta-G solvation = -3218.758166 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.87903 -39.42121 -37.34953 -35.02028 -33.24525 -32.57424 -31.47682 -31.34253 -29.84422 -26.57624 -25.67743 -23.03476 -22.32730 -21.88069 -20.37624 -20.03757 -18.40215 -17.38465 -16.83010 -16.51143 -16.32452 -15.66211 -15.61053 -14.68970 -14.64029 -14.17532 -13.92616 -13.86493 -13.76433 -13.34114 -12.74870 -12.63813 -12.47320 -12.16913 -11.75708 -11.64078 -11.57771 -11.25600 -11.11564 -10.75356 -10.54775 -10.02533 -9.83038 -9.64626 -9.48379 -9.34954 -9.30536 -9.11496 -9.05823 -8.48353 -5.99657 -3.97170 0.72276 0.97614 1.80895 2.64624 3.33895 3.36784 3.43845 3.50061 4.19329 4.31951 4.42612 4.51277 4.58555 4.62200 4.70385 4.73975 4.88068 5.06884 5.14567 5.18989 5.22970 5.35258 5.49871 5.59415 5.68296 5.99730 6.00156 6.07353 6.10302 6.10938 6.38423 6.52825 6.60235 6.66794 6.81595 6.98520 7.16049 7.38673 7.51395 7.85546 8.22672 8.58865 9.05175 9.63726 11.13760 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.045975 B = 0.002166 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.884733 B =12924.516884 C =13207.704313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.016 4.016 10 C -0.102 4.102 11 C -0.107 4.107 12 C -0.124 4.124 13 C 0.522 3.478 14 O -0.517 6.517 15 N -0.606 5.606 16 O -0.143 6.143 17 C 0.075 3.925 18 C -0.092 4.092 19 C -0.094 4.094 20 C -0.124 4.124 21 C -0.110 4.110 22 C -0.124 4.124 23 C -0.094 4.094 24 H 0.262 0.738 25 H 0.016 0.984 26 H 0.012 0.988 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.406 0.594 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.126 0.874 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.957 -19.151 0.008 33.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.137 4.137 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.054 4.054 10 C -0.140 4.140 11 C -0.145 4.145 12 C -0.165 4.165 13 C 0.310 3.690 14 O -0.389 6.389 15 N -0.310 5.310 16 O -0.147 6.147 17 C -0.003 4.003 18 C -0.093 4.093 19 C -0.112 4.112 20 C -0.142 4.142 21 C -0.128 4.128 22 C -0.142 4.142 23 C -0.112 4.112 24 H 0.072 0.928 25 H 0.035 0.965 26 H 0.030 0.970 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.245 0.755 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.144 0.856 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 27.354 -18.065 0.012 32.781 hybrid contribution 0.274 0.142 -0.027 0.310 sum 27.629 -17.923 -0.015 32.933 Atomic orbital electron populations 1.69917 1.06302 1.26829 1.51460 1.25047 0.94744 0.99247 0.94614 0.86772 0.80442 0.83527 0.78552 1.20315 1.21476 1.18866 1.21178 0.89641 0.94377 1.50543 0.91092 1.19585 0.96922 0.92437 0.96415 1.21479 0.91375 1.00065 1.01064 1.21541 0.97351 0.92343 1.03312 1.21757 0.87543 1.02380 1.04771 1.21376 0.90020 0.82028 0.75559 1.90737 1.69592 1.30868 1.47735 1.47896 0.93988 1.09759 1.79372 1.90693 1.01748 1.24894 1.97327 1.21749 0.90379 0.86078 1.02044 1.19362 0.92797 1.03213 0.93966 1.21114 0.94507 0.98078 0.97521 1.21180 0.94165 1.00415 0.98401 1.21263 1.00159 0.98805 0.92593 1.21180 0.94152 1.00406 0.98417 1.21113 0.94532 0.98078 0.97500 0.92824 0.96547 0.96981 0.92732 0.92693 0.91490 0.91503 0.88428 0.88432 0.75466 0.91218 0.91212 0.85677 0.85642 0.85790 0.85641 0.85679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.34 13.96 55.43 0.77 -27.57 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 22.40 27.47 -169.99 -4.67 17.73 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.26 -6.53 6.54 56.52 0.37 -6.16 16 7 C -0.52 -15.04 9.66 -34.44 -0.33 -15.37 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.02 -0.40 4.04 -27.88 -0.11 -0.51 16 10 C -0.10 -1.96 5.15 -26.73 -0.14 -2.10 16 11 C -0.11 -1.77 4.50 -26.73 -0.12 -1.89 16 12 C -0.12 -1.49 5.70 -27.88 -0.16 -1.65 16 13 C 0.52 7.36 7.97 -10.99 -0.09 7.28 16 14 O -0.52 -9.97 16.39 -12.63 -0.21 -10.18 16 15 N -0.61 -6.56 6.39 31.22 0.20 -6.37 16 16 O -0.14 -1.78 11.09 -29.66 -0.33 -2.11 16 17 C 0.07 0.59 6.35 36.01 0.23 0.82 16 18 C -0.09 -0.80 5.51 -104.62 -0.58 -1.38 16 19 C -0.09 -0.77 9.70 -39.58 -0.38 -1.15 16 20 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 21 C -0.11 -0.76 10.05 -39.58 -0.40 -1.16 16 22 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 23 C -0.09 -0.77 9.70 -39.58 -0.38 -1.15 16 24 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 25 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 26 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 30 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 31 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.41 2.59 8.54 -40.82 -0.35 2.24 16 34 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 35 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 36 H 0.13 0.86 8.06 -52.48 -0.42 0.43 16 37 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 38 H 0.12 0.58 8.06 -52.49 -0.42 0.16 16 39 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 40 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 LS Contribution 344.80 15.07 5.20 5.20 Total: -1.00 -36.82 344.80 -8.58 -45.40 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -6.19 Total: -3.08 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: -3.36 Total: -19.02 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 0.97 Total: -33.94 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: -0.54 Total: -12.29 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.67 Total: 17.73 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -36.82 -8.58 -45.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000144113684.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.111 kcal (2) G-P(sol) polarization free energy of solvation -36.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds