Wall clock time and date at job start Mon Mar 30 2020 01:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99942 * 2 1 4 4 H 1.48504 * 109.47240 * 269.99755 * 3 2 1 5 5 H 1.48491 * 109.47206 * 29.99986 * 3 2 1 6 6 H 1.48507 * 109.46854 * 150.00518 * 3 2 1 7 7 C 1.37883 * 119.99599 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00768 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99347 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.46579 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46690 * 179.97438 * 10 9 7 12 12 C 1.53008 * 109.47051 * 180.02562 * 11 10 9 13 13 C 1.50694 * 109.46967 * 180.02562 * 12 11 10 14 14 O 1.21276 * 120.00464 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99932 * 179.97438 * 13 12 11 16 16 O 1.41600 * 120.00395 * 179.97438 * 15 13 12 17 17 C 1.42893 * 113.99989 * 180.02562 * 16 15 13 18 18 C 1.50707 * 109.47070 * 179.97438 * 17 16 15 19 19 C 1.38238 * 119.99792 * 89.99993 * 18 17 16 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00179 * 269.97930 * 18 17 16 24 24 H 0.96996 * 120.00525 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47392 * 60.00547 * 9 7 2 26 26 H 1.09001 * 109.47311 * 299.99637 * 9 7 2 27 27 H 1.08997 * 109.46924 * 60.00723 * 10 9 7 28 28 H 1.08993 * 109.47248 * 300.00171 * 10 9 7 29 29 H 1.09005 * 109.47126 * 60.00210 * 11 10 9 30 30 H 1.09001 * 109.47340 * 299.99847 * 11 10 9 31 31 H 1.09000 * 109.46535 * 60.00245 * 12 11 10 32 32 H 1.08993 * 109.47063 * 300.00383 * 12 11 10 33 33 H 0.97001 * 119.99823 * 0.02562 * 15 13 12 34 34 H 1.09005 * 109.47744 * 60.00324 * 17 16 15 35 35 H 1.09000 * 109.47353 * 299.99523 * 17 16 15 36 36 H 1.08005 * 120.00068 * 359.97438 * 19 18 17 37 37 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 38 38 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 39 39 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 40 40 H 1.07999 * 119.99968 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1295 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 6 4.0214 -2.6367 -0.0010 11 6 5.5514 -2.6366 -0.0022 12 6 6.0615 -4.0792 -0.0028 13 6 7.5684 -4.0791 -0.0033 14 8 8.1749 -3.0289 -0.0029 15 7 8.2424 -5.2463 -0.0033 16 8 9.6584 -5.2464 -0.0044 17 6 10.2395 -6.5518 -0.0049 18 6 11.7419 -6.4329 -0.0067 19 6 12.4323 -6.3781 1.1897 20 6 13.8103 -6.2695 1.1880 21 6 14.4981 -6.2163 -0.0099 22 6 13.8073 -6.2657 -1.2063 23 6 12.4295 -6.3789 -1.2046 24 1 -0.4851 0.8400 -0.0004 25 1 3.8752 -0.6805 0.8889 26 1 3.8745 -0.6801 -0.8912 27 1 3.6578 -3.1506 -0.8908 28 1 3.6584 -3.1503 0.8892 29 1 5.9155 -2.1225 0.8873 30 1 5.9141 -2.1231 -0.8927 31 1 5.6974 -4.5928 -0.8925 32 1 5.6988 -4.5931 0.8874 33 1 7.7573 -6.0864 -0.0033 34 1 9.9173 -7.0928 -0.8946 35 1 9.9186 -7.0927 0.8854 36 1 11.8950 -6.4201 2.1257 37 1 14.3497 -6.2263 2.1227 38 1 15.5748 -6.1319 -0.0111 39 1 14.3442 -6.2197 -2.1422 40 1 11.8902 -6.4225 -2.1393 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000144113684.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:28 Heat of formation + Delta-G solvation = -49.217952 kcal Electronic energy + Delta-G solvation = -19621.481093 eV Core-core repulsion = 16401.728501 eV Total energy + Delta-G solvation = -3219.752592 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.71757 -40.20775 -38.21379 -36.61560 -34.61482 -34.01188 -32.46483 -31.87117 -31.34365 -27.69965 -26.84798 -23.92695 -23.56985 -22.50749 -21.77797 -21.36116 -19.24067 -18.82121 -18.11932 -17.56262 -17.15701 -16.59519 -16.33688 -16.19571 -15.67871 -15.58984 -14.98049 -14.78428 -14.59258 -14.33204 -13.99113 -13.86123 -13.69816 -13.50214 -13.33646 -12.85563 -12.33674 -12.30224 -12.11899 -12.06409 -11.86925 -11.74294 -11.50848 -11.31585 -11.23993 -10.97562 -10.74165 -9.98108 -9.89359 -9.87506 -8.28047 -6.30591 0.12043 0.42711 1.00649 1.35993 1.37555 1.50276 1.59880 2.37257 2.77431 3.07523 3.48914 3.76449 3.79690 3.80835 4.00834 4.07610 4.17489 4.22820 4.22931 4.32525 4.55838 4.62007 4.67364 4.67932 4.78048 4.86183 4.98419 5.07796 5.15951 5.23023 5.30824 5.46920 5.54050 5.54621 5.63174 5.68938 5.70249 5.74154 6.01428 6.30887 6.33361 6.77590 7.28441 7.34163 8.88351 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.045975 B = 0.002166 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.884733 B =12924.516884 C =13207.704313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.003 3.997 3 Si 0.946 3.054 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.253 1.253 7 C -0.528 4.528 8 H 0.039 0.961 9 C -0.019 4.019 10 C -0.093 4.093 11 C -0.101 4.101 12 C -0.113 4.113 13 C 0.522 3.478 14 O -0.579 6.579 15 N -0.586 5.586 16 O -0.176 6.176 17 C 0.073 3.927 18 C -0.112 4.112 19 C -0.110 4.110 20 C -0.133 4.133 21 C -0.116 4.116 22 C -0.133 4.133 23 C -0.110 4.110 24 H 0.265 0.735 25 H 0.013 0.987 26 H 0.012 0.988 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.428 0.572 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.132 0.868 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.706 -20.204 -0.020 35.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.194 4.194 3 Si 0.770 3.230 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.177 1.177 7 C -0.566 4.566 8 H 0.058 0.942 9 C -0.057 4.057 10 C -0.130 4.130 11 C -0.139 4.139 12 C -0.153 4.153 13 C 0.311 3.689 14 O -0.457 6.457 15 N -0.291 5.291 16 O -0.181 6.181 17 C -0.003 4.003 18 C -0.113 4.113 19 C -0.128 4.128 20 C -0.151 4.151 21 C -0.134 4.134 22 C -0.151 4.151 23 C -0.128 4.128 24 H 0.074 0.926 25 H 0.032 0.968 26 H 0.031 0.969 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.272 0.728 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.150 0.850 37 H 0.161 0.839 38 H 0.164 0.836 39 H 0.161 0.839 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 29.107 -19.200 -0.017 34.869 hybrid contribution -0.253 0.346 -0.018 0.429 sum 28.854 -18.855 -0.035 34.468 Atomic orbital electron populations 1.70054 1.08065 1.28013 1.52985 1.25984 0.95612 1.03343 0.94424 0.85715 0.79395 0.78776 0.79126 1.19303 1.20834 1.17651 1.21553 0.92103 0.93225 1.49741 0.94235 1.19600 0.93894 0.96085 0.96107 1.21331 0.93253 0.96688 1.01772 1.21333 0.95081 0.95429 1.02032 1.21666 0.86071 0.99731 1.07826 1.21667 0.90747 0.81831 0.74626 1.90717 1.70873 1.33156 1.50936 1.47598 0.93940 1.10076 1.77440 1.90681 1.02141 1.27839 1.97467 1.21966 0.89877 0.84601 1.03886 1.19582 0.93316 1.04014 0.94410 1.21356 0.95213 0.98434 0.97810 1.21494 0.94099 0.99974 0.99494 1.21606 1.01417 0.98021 0.92359 1.21495 0.94087 0.99967 0.99512 1.21354 0.95236 0.98429 0.97787 0.92575 0.96841 0.96936 0.91999 0.92014 0.92935 0.92861 0.85286 0.85316 0.72771 0.89325 0.89323 0.84963 0.83853 0.83622 0.83852 0.84960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.37 13.96 21.45 0.30 -60.07 16 2 C 0.00 0.18 5.47 84.66 0.46 0.64 16 3 Si 0.95 46.07 27.47 68.60 1.88 47.96 16 4 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 5 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 6 H -0.25 -11.74 6.54 99.48 0.65 -11.09 16 7 C -0.53 -30.86 9.66 25.60 0.25 -30.61 16 8 H 0.04 2.48 7.99 -2.91 -0.02 2.46 16 9 C -0.02 -0.93 4.04 29.85 0.12 -0.81 16 10 C -0.09 -3.43 5.15 30.60 0.16 -3.27 16 11 C -0.10 -3.16 4.50 30.60 0.14 -3.02 16 12 C -0.11 -2.37 5.70 29.85 0.17 -2.20 16 13 C 0.52 13.84 7.97 87.65 0.70 14.54 16 14 O -0.58 -22.29 16.39 14.38 0.24 -22.06 16 15 N -0.59 -11.40 6.39 -173.54 -1.11 -12.51 16 16 O -0.18 -4.19 11.09 -21.39 -0.24 -4.42 16 17 C 0.07 1.04 6.35 71.24 0.45 1.50 16 18 C -0.11 -1.85 5.51 -19.86 -0.11 -1.96 16 19 C -0.11 -1.71 9.70 22.27 0.22 -1.49 16 20 C -0.13 -1.77 10.05 22.27 0.22 -1.54 16 21 C -0.12 -1.43 10.05 22.27 0.22 -1.21 16 22 C -0.13 -1.77 10.05 22.27 0.22 -1.54 16 23 C -0.11 -1.70 9.70 22.27 0.22 -1.49 16 24 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 25 H 0.01 0.64 7.20 -2.39 -0.02 0.63 16 26 H 0.01 0.59 7.57 -2.39 -0.02 0.57 16 27 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.05 1.79 8.10 -2.38 -0.02 1.77 16 30 H 0.05 1.81 8.10 -2.39 -0.02 1.79 16 31 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.43 4.07 8.54 -92.71 -0.79 3.28 16 34 H 0.09 0.89 8.08 -2.38 -0.02 0.87 16 35 H 0.09 0.89 8.09 -2.39 -0.02 0.87 16 36 H 0.13 1.71 8.06 -2.91 -0.02 1.69 16 37 H 0.14 1.26 8.06 -2.91 -0.02 1.23 16 38 H 0.15 1.06 8.06 -2.91 -0.02 1.03 16 39 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 40 H 0.13 1.71 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -81.62 344.80 4.69 -76.93 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 0.17 Total: 6.64 kcal Atomic # 6 Polarization: -35.91 SS G_CDS: 3.44 Total: -32.47 kcal Atomic # 7 Polarization: -71.77 SS G_CDS: -0.81 Total: -72.58 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: 0.00 Total: -26.48 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 1.88 Total: 47.96 kcal Total: -81.62 4.69 -76.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000144113684.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.714 kcal (2) G-P(sol) polarization free energy of solvation -81.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds