Wall clock time and date at job start Mon Mar 30 2020 02:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34227 * 116.99945 * 2 1 4 4 O 1.20824 * 120.00044 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00377 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.47216 * 300.00564 * 5 3 2 7 7 C 1.50707 * 109.47029 * 59.99962 * 5 3 2 8 8 C 1.38253 * 119.99921 * 99.97862 * 7 5 3 9 9 C 1.38217 * 119.99821 * 179.97438 * 8 7 5 10 10 C 1.38256 * 120.00102 * 359.97438 * 9 8 7 11 11 C 1.38212 * 119.99940 * 359.80658 * 10 9 8 12 12 C 1.38214 * 119.99903 * 280.00498 * 7 5 3 13 13 C 1.50703 * 120.00023 * 359.97438 * 12 7 5 14 14 N 1.46897 * 109.47531 * 179.97438 * 5 3 2 15 15 C 1.46906 * 111.00101 * 183.95122 * 14 5 3 16 16 C 1.46907 * 110.99961 * 60.00542 * 14 5 3 17 17 C 1.50696 * 109.47189 * 189.99896 * 16 14 5 18 18 H 1.08001 * 119.99881 * 0.02562 * 17 16 14 19 19 C 1.37873 * 119.99950 * 179.97438 * 17 16 14 20 20 N 1.31514 * 120.00134 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99991 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46767 * 90.01063 * 21 19 17 23 23 H 1.48501 * 109.46881 * 210.00589 * 21 19 17 24 24 H 1.48497 * 109.47179 * 330.00304 * 21 19 17 25 25 H 1.09000 * 109.46888 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47000 * 299.99806 * 1 2 3 27 27 H 1.08998 * 109.47013 * 59.99807 * 1 2 3 28 28 H 1.07997 * 119.99984 * 359.97438 * 8 7 5 29 29 H 1.07998 * 119.99767 * 179.97438 * 9 8 7 30 30 H 1.07999 * 120.00232 * 179.97438 * 10 9 8 31 31 H 1.08000 * 120.00193 * 180.22780 * 11 10 9 32 32 H 1.09002 * 109.47152 * 90.00127 * 13 12 7 33 33 H 1.09001 * 109.46980 * 330.00228 * 13 12 7 34 34 H 1.09004 * 109.47113 * 210.00208 * 13 12 7 35 35 H 1.09005 * 109.46441 * 60.00504 * 15 14 5 36 36 H 1.08999 * 109.46996 * 180.02562 * 15 14 5 37 37 H 1.08996 * 109.47465 * 300.00717 * 15 14 5 38 38 H 1.09007 * 109.46621 * 309.99876 * 16 14 5 39 39 H 1.09000 * 109.47014 * 69.99541 * 16 14 5 40 40 H 0.96996 * 120.00391 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9557 0.7810 0.8908 7 6 4.1057 0.5916 -1.2296 8 6 4.4933 1.3426 -2.3237 9 6 4.9884 0.7159 -3.4517 10 6 5.0966 -0.6620 -3.4857 11 6 4.7134 -1.4125 -2.3902 12 6 4.2123 -0.7860 -1.2641 13 6 3.7898 -1.6047 -0.0715 14 7 3.9828 2.6836 -0.0002 15 6 5.4442 2.8005 -0.0941 16 6 3.4741 3.3837 1.1870 17 6 3.7062 4.8648 1.0347 18 1 4.1835 5.2479 0.1448 19 6 3.3083 5.7310 2.0309 20 7 2.7266 5.2645 3.1143 21 14 3.5967 7.5670 1.8424 22 1 2.4225 8.1867 1.1774 23 1 3.7864 8.1783 3.1824 24 1 4.8104 7.7953 1.0179 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 4.4091 2.4190 -2.2970 29 1 5.2908 1.3025 -4.3065 30 1 5.4831 -1.1518 -4.3672 31 1 4.8013 -2.4887 -2.4153 32 1 2.7358 -1.8662 -0.1653 33 1 3.9406 -1.0247 0.8391 34 1 4.3874 -2.5151 -0.0256 35 1 5.7872 2.3342 -1.0177 36 1 5.7253 3.8537 -0.0922 37 1 5.9043 2.3005 0.7581 38 1 2.4061 3.1921 1.2918 39 1 3.9966 3.0232 2.0731 40 1 2.4470 5.8738 3.8153 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163064738.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:29 Heat of formation + Delta-G solvation = -57.094440 kcal Electronic energy + Delta-G solvation = -22409.040310 eV Core-core repulsion = 19188.946168 eV Total energy + Delta-G solvation = -3220.094142 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.96617 -40.30632 -38.35892 -37.06674 -34.87789 -33.89350 -32.37217 -29.81971 -29.12463 -28.16495 -27.53389 -25.76134 -23.33508 -23.18429 -22.06282 -20.98931 -18.72950 -18.65918 -17.82641 -17.68633 -16.95942 -16.77162 -16.38325 -15.85602 -15.24536 -15.13350 -15.01090 -14.67621 -14.32123 -14.10261 -14.01733 -13.80583 -13.32433 -13.20793 -13.08013 -13.02509 -12.83657 -12.68163 -12.54966 -12.30094 -12.11833 -11.93837 -11.78509 -11.72470 -11.31757 -11.13598 -10.53468 -9.57964 -9.46359 -9.17510 -8.20068 -6.28159 0.37684 0.55706 1.21098 1.38174 1.41660 1.51717 1.66764 2.39398 2.87726 3.12871 3.18526 3.62333 3.88720 3.98618 4.09559 4.18761 4.30938 4.32927 4.33387 4.49964 4.55609 4.63768 4.66817 4.72345 4.93507 4.94560 5.00400 5.04859 5.09037 5.19805 5.25327 5.36466 5.44523 5.57450 5.65462 5.69359 5.78779 6.04715 6.17898 6.23895 6.44858 6.80701 6.87326 7.38879 8.92238 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019767 B = 0.005812 C = 0.004927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.190687 B = 4816.814429 C = 5681.287170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.349 6.349 3 C 0.464 3.536 4 O -0.511 6.511 5 C 0.135 3.865 6 H 0.078 0.922 7 C -0.104 4.104 8 C -0.104 4.104 9 C -0.138 4.138 10 C -0.106 4.106 11 C -0.126 4.126 12 C -0.070 4.070 13 C -0.116 4.116 14 N -0.529 5.529 15 C 0.035 3.965 16 C 0.194 3.806 17 C -0.516 4.516 18 H 0.063 0.937 19 C -0.002 4.002 20 N -0.937 5.937 21 Si 0.972 3.028 22 H -0.277 1.277 23 H -0.280 1.280 24 H -0.260 1.260 25 H 0.144 0.856 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.119 0.881 29 H 0.140 0.860 30 H 0.153 0.847 31 H 0.152 0.848 32 H 0.086 0.914 33 H 0.049 0.951 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.014 0.986 38 H 0.030 0.970 39 H -0.043 1.043 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.137 -17.125 -11.263 20.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.265 6.265 3 C 0.306 3.694 4 O -0.398 6.398 5 C 0.026 3.974 6 H 0.095 0.905 7 C -0.104 4.104 8 C -0.122 4.122 9 C -0.155 4.155 10 C -0.124 4.124 11 C -0.143 4.143 12 C -0.071 4.071 13 C -0.172 4.172 14 N -0.254 5.254 15 C -0.112 4.112 16 C 0.068 3.932 17 C -0.554 4.554 18 H 0.081 0.919 19 C -0.199 4.199 20 N -0.578 5.578 21 Si 0.796 3.204 22 H -0.203 1.203 23 H -0.205 1.205 24 H -0.184 1.184 25 H 0.162 0.838 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.137 0.863 29 H 0.158 0.842 30 H 0.170 0.830 31 H 0.170 0.830 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.085 0.915 37 H 0.033 0.967 38 H 0.048 0.952 39 H -0.025 1.025 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.622 -16.553 -11.503 20.327 hybrid contribution -0.156 1.153 1.322 1.761 sum 2.467 -15.399 -10.181 18.625 Atomic orbital electron populations 1.23525 0.75361 1.05789 1.01872 1.86512 1.24405 1.31548 1.84070 1.23729 0.91888 0.81614 0.72134 1.90701 1.67254 1.37339 1.44518 1.20004 0.87241 0.91674 0.98526 0.90521 1.19222 1.03371 0.93796 0.94043 1.21235 0.97553 1.00521 0.92911 1.21377 1.00680 0.95749 0.97730 1.21530 0.98260 0.93504 0.99124 1.21289 0.99590 1.01117 0.92340 1.19971 0.97594 0.91935 0.97562 1.20918 1.02901 0.99336 0.94094 1.61816 1.12400 1.08222 1.43009 1.22478 0.85738 1.02341 1.00634 1.19721 0.95462 0.93753 0.84221 1.21386 1.38487 0.91974 1.03559 0.91882 1.25932 0.94940 1.04292 0.94775 1.70102 1.42123 1.36749 1.08831 0.85349 0.78870 0.78650 0.77523 1.20315 1.20536 1.18421 0.83833 0.93146 0.92566 0.86335 0.84203 0.82954 0.83014 0.89560 0.93184 0.89245 0.89200 0.91530 0.96731 0.95173 1.02523 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 10.56 113.37 1.20 1.90 16 2 O -0.35 -11.21 7.80 -51.39 -0.40 -11.61 16 3 C 0.46 19.24 6.89 71.23 0.49 19.73 16 4 O -0.51 -25.96 13.63 21.97 0.30 -25.66 16 5 C 0.14 5.32 1.68 43.42 0.07 5.40 16 6 H 0.08 2.97 6.41 -2.39 -0.02 2.95 16 7 C -0.10 -3.32 4.44 -19.86 -0.09 -3.41 16 8 C -0.10 -3.21 7.25 22.27 0.16 -3.05 16 9 C -0.14 -3.21 10.05 22.27 0.22 -2.99 16 10 C -0.11 -2.02 10.05 22.27 0.22 -1.80 16 11 C -0.13 -2.48 9.70 22.27 0.22 -2.27 16 12 C -0.07 -1.78 5.75 -19.86 -0.11 -1.89 16 13 C -0.12 -2.52 8.55 71.24 0.61 -1.91 16 14 N -0.53 -24.56 3.59 -910.46 -3.26 -27.83 16 15 C 0.04 1.41 8.51 127.69 1.09 2.50 16 16 C 0.19 11.13 4.32 85.55 0.37 11.50 16 17 C -0.52 -31.02 8.46 25.60 0.22 -30.80 16 18 H 0.06 3.69 7.12 -2.91 -0.02 3.67 16 19 C 0.00 -0.13 5.46 84.65 0.46 0.34 16 20 N -0.94 -59.45 13.29 21.45 0.28 -59.16 16 21 Si 0.97 46.49 29.54 68.60 2.03 48.51 16 22 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 23 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 24 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 25 H 0.14 2.23 8.14 -2.39 -0.02 2.22 16 26 H 0.05 1.41 8.13 -2.38 -0.02 1.39 16 27 H 0.06 1.48 8.13 -2.39 -0.02 1.46 16 28 H 0.12 4.19 6.41 -2.91 -0.02 4.17 16 29 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 30 H 0.15 1.85 8.06 -2.91 -0.02 1.82 16 31 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 32 H 0.09 1.82 6.75 -2.39 -0.02 1.80 16 33 H 0.05 1.24 6.12 -2.39 -0.01 1.23 16 34 H 0.09 1.42 8.08 -2.38 -0.02 1.40 16 35 H 0.09 3.05 4.97 -2.38 -0.01 3.03 16 36 H 0.07 2.84 6.76 -2.39 -0.02 2.83 16 37 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.03 1.93 5.21 -2.38 -0.01 1.92 16 39 H -0.04 -2.62 8.12 -2.39 -0.02 -2.64 16 40 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -76.01 321.81 5.11 -70.90 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 1.04 Total: 11.60 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: 5.13 Total: -6.74 kcal Atomic # 7 Polarization: -84.01 SS G_CDS: -2.98 Total: -86.99 kcal Atomic # 8 Polarization: -37.18 SS G_CDS: -0.10 Total: -37.28 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.51 kcal Total: -76.01 5.11 -70.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163064738.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.807 kcal (2) G-P(sol) polarization free energy of solvation -76.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds