Wall clock time and date at job start Mon Mar 30 2020 02:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34234 * 117.00299 * 2 1 4 4 O 1.20819 * 119.99435 * 0.02562 * 3 2 1 5 5 C 1.50695 * 119.99893 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.47163 * 180.02562 * 5 3 2 7 7 C 1.36941 * 119.99593 * 263.63494 * 6 5 3 8 8 H 1.08000 * 119.99693 * 199.55296 * 7 6 5 9 9 C 1.38805 * 120.00231 * 19.55620 * 7 6 5 10 10 N 1.31624 * 120.00121 * 16.70920 * 9 7 6 11 11 Si 1.86796 * 120.00334 * 196.70735 * 9 7 6 12 12 H 1.48496 * 109.47260 * 89.99704 * 11 9 7 13 13 H 1.48502 * 109.47412 * 210.00399 * 11 9 7 14 14 H 1.48503 * 109.46710 * 330.00174 * 11 9 7 15 15 C 1.46504 * 120.00224 * 83.63005 * 6 5 3 16 16 C 1.50693 * 109.47202 * 263.30533 * 15 6 5 17 17 C 1.38264 * 120.00447 * 325.59090 * 16 15 6 18 18 C 1.38209 * 119.99826 * 180.29773 * 17 16 15 19 19 C 1.50701 * 119.99451 * 179.72043 * 18 17 16 20 20 C 1.38254 * 120.00091 * 359.70098 * 18 17 16 21 21 C 1.38212 * 120.00593 * 0.02562 * 20 18 17 22 22 C 1.38218 * 120.00033 * 145.33319 * 16 15 6 23 23 C 1.50698 * 119.99687 * 0.02562 * 22 16 15 24 24 H 1.08998 * 109.47697 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47121 * 300.00284 * 1 2 3 26 26 H 1.09001 * 109.47052 * 59.99873 * 1 2 3 27 27 H 1.08993 * 109.47500 * 60.00029 * 5 3 2 28 28 H 1.09005 * 109.47336 * 299.99858 * 5 3 2 29 29 H 0.96992 * 120.00349 * 180.02562 * 10 9 7 30 30 H 1.08998 * 109.47035 * 143.30532 * 15 6 5 31 31 H 1.09003 * 109.46924 * 23.30799 * 15 6 5 32 32 H 1.08000 * 119.99574 * 0.02562 * 17 16 15 33 33 H 1.08998 * 109.47257 * 269.97535 * 19 18 17 34 34 H 1.09003 * 109.47163 * 29.98281 * 19 18 17 35 35 H 1.09002 * 109.46928 * 149.97838 * 19 18 17 36 36 H 1.08001 * 119.99868 * 180.02562 * 20 18 17 37 37 H 1.07991 * 120.00674 * 179.97438 * 21 20 18 38 38 H 1.09000 * 109.47559 * 269.23114 * 23 22 16 39 39 H 1.09000 * 109.47408 * 149.22569 * 23 22 16 40 40 H 1.09004 * 109.47401 * 29.22851 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6796 0.0002 7 6 4.3016 3.2996 -1.1783 8 1 4.8958 4.2014 -1.1700 9 6 3.8619 2.7691 -2.3832 10 7 2.8862 1.8858 -2.3965 11 14 4.6548 3.3088 -3.9861 12 1 5.8006 2.4167 -4.2966 13 1 3.6564 3.2321 -5.0828 14 1 5.1378 4.7068 -3.8533 15 6 4.0552 3.4212 1.2615 16 6 2.7849 4.2083 1.4560 17 6 2.1311 4.7469 0.3633 18 6 0.9694 5.4740 0.5424 19 6 0.2603 6.0664 -0.6481 20 6 0.4578 5.6575 1.8136 21 6 1.1082 5.1143 2.9055 22 6 2.2705 4.3873 2.7264 23 6 2.9802 3.7957 3.9169 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 3.9557 0.7809 -0.8907 28 1 3.9565 0.7805 0.8892 29 1 2.5792 1.5148 -3.2384 30 1 4.9046 4.1036 1.2329 31 1 4.1791 2.7212 2.0878 32 1 2.5306 4.6032 -0.6298 33 1 0.6426 7.0696 -0.8365 34 1 0.4348 5.4406 -1.5233 35 1 -0.8095 6.1174 -0.4453 36 1 -0.4502 6.2253 1.9535 37 1 0.7088 5.2579 3.8985 38 1 2.5923 2.7958 4.1113 39 1 2.8130 4.4265 4.7900 40 1 4.0490 3.7370 3.7105 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174569648.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:09 Heat of formation + Delta-G solvation = -38.754429 kcal Electronic energy + Delta-G solvation = -23008.595642 eV Core-core repulsion = 19789.296782 eV Total energy + Delta-G solvation = -3219.298860 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.10895 -38.57946 -35.93394 -34.48902 -33.34894 -31.64371 -30.08699 -28.67392 -27.87805 -25.98662 -25.84216 -24.10977 -22.39545 -20.80288 -19.64870 -19.21869 -16.88572 -16.16536 -15.55970 -15.24590 -14.98374 -14.84196 -14.59590 -13.93850 -13.77929 -13.26933 -12.93981 -12.76287 -12.72776 -12.23100 -12.08874 -12.02138 -11.97881 -11.64218 -11.29505 -11.14677 -11.02714 -10.89754 -10.64869 -10.43432 -10.25016 -10.18259 -10.07767 -9.83484 -9.52120 -9.05151 -8.55687 -7.65147 -7.54985 -7.04716 -5.95240 -3.32566 2.19432 2.39756 3.32078 3.39677 3.40673 3.95785 4.10262 4.41946 4.63174 5.27029 5.30845 5.50989 5.56434 5.72604 5.79048 5.83275 5.84660 5.90461 6.01972 6.10991 6.12247 6.14464 6.21535 6.31503 6.33375 6.37381 6.50794 6.51683 6.70555 6.79883 6.99569 7.04959 7.14221 7.28328 7.58163 7.62923 7.73768 7.83911 8.04092 8.20102 8.99442 9.45244 9.67871 10.10814 11.13973 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013970 B = 0.008497 C = 0.007341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.791272 B = 3294.320880 C = 3813.104389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.386 6.386 3 C 0.458 3.542 4 O -0.489 6.489 5 C 0.192 3.808 6 N -0.565 5.565 7 C -0.255 4.255 8 H 0.079 0.921 9 C 0.005 3.995 10 N -0.900 5.900 11 Si 0.909 3.091 12 H -0.286 1.286 13 H -0.292 1.292 14 H -0.279 1.279 15 C 0.176 3.824 16 C -0.086 4.086 17 C -0.037 4.037 18 C -0.107 4.107 19 C -0.104 4.104 20 C -0.133 4.133 21 C -0.139 4.139 22 C -0.106 4.106 23 C -0.107 4.107 24 H 0.077 0.923 25 H 0.043 0.957 26 H 0.051 0.949 27 H 0.114 0.886 28 H 0.047 0.953 29 H 0.258 0.742 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.146 0.854 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.052 0.948 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.703 0.927 7.523 7.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.304 6.304 3 C 0.297 3.703 4 O -0.372 6.372 5 C 0.063 3.937 6 N -0.284 5.284 7 C -0.384 4.384 8 H 0.097 0.903 9 C -0.194 4.194 10 N -0.544 5.544 11 Si 0.739 3.261 12 H -0.213 1.213 13 H -0.219 1.219 14 H -0.204 1.204 15 C 0.050 3.950 16 C -0.089 4.089 17 C -0.055 4.055 18 C -0.107 4.107 19 C -0.161 4.161 20 C -0.151 4.151 21 C -0.157 4.157 22 C -0.107 4.107 23 C -0.164 4.164 24 H 0.096 0.904 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.131 0.869 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.163 0.837 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.970 1.182 7.361 7.711 hybrid contribution -0.478 0.288 -1.036 1.176 sum -2.447 1.470 6.325 6.940 Atomic orbital electron populations 1.22795 0.80029 1.01033 1.01113 1.86536 1.20771 1.37084 1.85971 1.25500 0.93550 0.80328 0.70892 1.90522 1.66403 1.35803 1.44474 1.20268 0.85625 0.86522 1.01289 1.44086 1.74947 1.06637 1.02775 1.19236 1.26217 1.10000 0.82945 0.90280 1.24911 0.96619 0.99733 0.98129 1.69786 1.25973 1.32817 1.25836 0.86171 0.78503 0.78357 0.83026 1.21316 1.21865 1.20419 1.20038 0.92844 0.93519 0.88628 1.20752 0.99088 0.97269 0.91784 1.21254 0.92540 0.91174 1.00500 1.19837 0.96793 1.00009 0.94029 1.20657 0.98701 0.99919 0.96826 1.20715 0.99742 1.01952 0.92714 1.20628 0.96523 1.01049 0.97543 1.19654 0.96339 1.00160 0.94547 1.20711 1.00098 1.00021 0.95559 0.90399 0.93782 0.93035 0.86872 0.93498 0.93169 0.92302 0.92693 0.83659 0.92472 0.91539 0.92933 0.87980 0.87881 0.92218 0.92641 0.91720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.83 10.56 101.05 1.07 1.90 16 2 O -0.39 -8.43 10.57 -39.27 -0.41 -8.85 16 3 C 0.46 10.94 6.11 36.00 0.22 11.16 16 4 O -0.49 -12.72 12.36 -18.75 -0.23 -12.95 16 5 C 0.19 4.37 5.50 -5.20 -0.03 4.34 16 6 N -0.57 -13.10 1.89 -175.99 -0.33 -13.43 16 7 C -0.26 -6.37 7.26 -15.06 -0.11 -6.48 16 8 H 0.08 1.96 7.88 -52.49 -0.41 1.55 16 9 C 0.00 0.12 4.97 -17.43 -0.09 0.04 16 10 N -0.90 -24.22 9.07 55.49 0.50 -23.72 16 11 Si 0.91 20.76 29.59 -169.99 -5.03 15.74 16 12 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 15 C 0.18 3.56 5.37 -5.19 -0.03 3.53 16 16 C -0.09 -1.81 4.72 -104.62 -0.49 -2.31 16 17 C -0.04 -0.84 6.67 -39.58 -0.26 -1.10 16 18 C -0.11 -2.19 5.88 -104.63 -0.62 -2.81 16 19 C -0.10 -1.88 10.01 36.01 0.36 -1.52 16 20 C -0.13 -2.48 9.70 -39.59 -0.38 -2.87 16 21 C -0.14 -2.51 9.70 -39.58 -0.38 -2.90 16 22 C -0.11 -1.98 5.88 -104.62 -0.62 -2.60 16 23 C -0.11 -1.59 9.21 36.00 0.33 -1.26 16 24 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.04 0.79 8.13 -51.93 -0.42 0.36 16 26 H 0.05 1.00 8.13 -51.93 -0.42 0.58 16 27 H 0.11 2.76 6.40 -51.93 -0.33 2.43 16 28 H 0.05 0.93 7.96 -51.93 -0.41 0.51 16 29 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.06 1.14 8.09 -51.93 -0.42 0.72 16 31 H 0.05 1.00 6.17 -51.93 -0.32 0.68 16 32 H 0.15 3.76 5.57 -52.49 -0.29 3.46 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.07 1.31 8.09 -51.93 -0.42 0.89 16 35 H 0.05 0.84 8.09 -51.93 -0.42 0.42 16 36 H 0.10 1.65 8.06 -52.49 -0.42 1.22 16 37 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.05 0.71 8.09 -51.93 -0.42 0.29 16 40 H 0.06 0.89 6.56 -51.93 -0.34 0.55 16 LS Contribution 324.38 15.07 4.89 4.89 Total: -1.00 -29.11 324.38 -7.53 -36.64 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -5.89 Total: 4.56 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -1.03 Total: -2.88 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.17 Total: -37.15 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.65 Total: -21.80 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.74 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.11 -7.53 -36.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174569648.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.111 kcal (2) G-P(sol) polarization free energy of solvation -29.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds