Wall clock time and date at job start Mon Mar 30 2020 01:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99817 * 2 1 4 4 H 1.48496 * 109.47141 * 269.99609 * 3 2 1 5 5 H 1.48498 * 109.47253 * 30.00255 * 3 2 1 6 6 H 1.48505 * 109.47030 * 149.99772 * 3 2 1 7 7 C 1.37872 * 120.00136 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00439 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99845 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47070 * 179.97438 * 9 7 2 11 11 C 1.46501 * 120.00105 * 269.99988 * 10 9 7 12 12 C 1.52995 * 109.47069 * 270.00246 * 11 10 9 13 13 C 1.53005 * 117.49594 * 243.62191 * 12 11 10 14 14 C 1.53006 * 60.00017 * 252.50831 * 13 12 11 15 15 C 1.34778 * 119.99759 * 89.99907 * 10 9 7 16 16 O 1.21273 * 120.00276 * 0.02562 * 15 10 9 17 17 C 1.50708 * 119.99823 * 180.02562 * 15 10 9 18 18 C 1.52999 * 109.47312 * 180.02562 * 17 15 10 19 19 C 1.50696 * 109.47311 * 179.97438 * 18 17 15 20 20 C 1.41388 * 126.57799 * 89.99880 * 19 18 17 21 21 C 1.34515 * 106.83843 * 180.02562 * 20 19 18 22 22 O 1.34304 * 108.42331 * 0.02562 * 21 20 19 23 23 C 1.34305 * 109.47208 * 359.97438 * 22 21 20 24 24 H 0.97000 * 120.00384 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.46940 * 60.00209 * 9 7 2 26 26 H 1.09000 * 109.46654 * 299.99675 * 9 7 2 27 27 H 1.09003 * 109.46906 * 30.00106 * 11 10 9 28 28 H 1.09005 * 109.47053 * 149.99728 * 11 10 9 29 29 H 1.08993 * 115.55315 * 29.32637 * 12 11 10 30 30 H 1.08997 * 117.50079 * 359.97438 * 13 12 11 31 31 H 1.09002 * 117.49674 * 145.02566 * 13 12 11 32 32 H 1.08993 * 117.49801 * 252.51318 * 14 13 12 33 33 H 1.09001 * 117.49663 * 107.48238 * 14 13 12 34 34 H 1.09001 * 109.46917 * 59.99889 * 17 15 10 35 35 H 1.08999 * 109.46943 * 300.00087 * 17 15 10 36 36 H 1.08997 * 109.46605 * 59.99707 * 18 17 15 37 37 H 1.09005 * 109.46901 * 300.00275 * 18 17 15 38 38 H 1.08001 * 126.57691 * 0.26428 * 20 19 18 39 39 H 1.07999 * 125.78383 * 179.97438 * 21 20 19 40 40 H 1.08004 * 125.78137 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 2.6790 -4.1694 -1.2682 12 6 1.7483 -5.3006 -1.7099 13 6 2.3403 -6.7087 -1.7982 14 6 2.0087 -5.9366 -3.0769 15 6 2.6409 -4.1248 1.1678 16 8 2.2465 -3.6642 2.2180 17 6 3.6207 -5.2699 1.1678 18 6 3.9515 -5.6581 2.6103 19 6 4.9308 -6.8035 2.6103 20 6 6.3413 -6.7061 2.6108 21 6 6.8187 -7.9637 2.6101 22 8 5.7781 -8.8127 2.6085 23 6 4.6307 -8.1147 2.6088 24 1 -0.4851 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6241 -2.5566 0.8903 27 1 2.6868 -3.3877 -2.0278 28 1 3.6885 -4.5594 -1.1378 29 1 0.7114 -5.2096 -1.3864 30 1 3.3929 -6.8291 -1.5420 31 1 1.6928 -7.5444 -1.5327 32 1 1.1431 -6.2644 -3.6525 33 1 2.8431 -5.5491 -3.6614 34 1 4.5332 -4.9673 0.6541 35 1 3.1807 -6.1245 0.6538 36 1 3.0388 -5.9608 3.1234 37 1 4.3913 -4.8035 3.1247 38 1 6.9236 -5.7966 2.6153 39 1 7.8619 -8.2432 2.6098 40 1 3.6358 -8.5350 2.6074 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175373712.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:36 Heat of formation + Delta-G solvation = -25.329982 kcal Electronic energy + Delta-G solvation = -21304.133871 eV Core-core repulsion = 18085.417139 eV Total energy + Delta-G solvation = -3218.716732 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.38039 -40.82212 -38.37672 -36.29043 -35.63861 -34.58383 -32.39257 -30.38370 -29.45677 -27.66445 -26.08544 -24.05458 -23.16257 -22.39470 -21.81898 -21.04821 -19.85146 -18.62024 -18.48243 -17.69158 -17.17881 -16.75151 -16.63561 -16.10223 -15.92092 -15.46267 -15.18077 -14.60102 -14.45198 -14.15794 -13.73124 -13.61758 -13.56931 -13.16241 -13.04821 -12.95469 -12.78153 -12.55834 -12.49763 -12.27063 -12.22193 -11.88801 -11.71835 -11.23820 -10.91175 -10.64812 -10.63072 -10.40680 -9.43416 -9.37110 -8.22663 -6.37743 0.94087 1.35552 1.38765 1.49038 1.70417 1.85560 2.29351 2.37381 2.46697 2.98178 3.06673 3.63555 3.90444 3.95014 4.05664 4.06313 4.14255 4.25562 4.30537 4.34899 4.43815 4.65721 4.76694 4.81008 4.85271 4.89303 4.89998 5.03760 5.08568 5.16293 5.23154 5.27973 5.33708 5.34586 5.40011 5.56605 5.63856 5.85545 6.06352 6.27621 6.69670 6.81132 7.28220 7.50211 8.84527 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016797 B = 0.004574 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.582478 B = 6119.569880 C = 7186.707682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.968 3.032 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.273 1.273 7 C -0.543 4.543 8 H 0.053 0.947 9 C 0.262 3.738 10 N -0.600 5.600 11 C 0.143 3.857 12 C -0.193 4.193 13 C -0.163 4.163 14 C -0.163 4.163 15 C 0.496 3.504 16 O -0.599 6.599 17 C -0.114 4.114 18 C -0.028 4.028 19 C -0.190 4.190 20 C -0.230 4.230 21 C -0.036 4.036 22 O -0.187 6.187 23 C -0.040 4.040 24 H 0.267 0.733 25 H 0.019 0.981 26 H -0.004 1.004 27 H 0.071 0.929 28 H 0.098 0.902 29 H 0.080 0.920 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.114 0.886 36 H 0.067 0.933 37 H 0.056 0.944 38 H 0.151 0.849 39 H 0.236 0.764 40 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.439 -18.629 -2.687 22.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.191 4.191 3 Si 0.792 3.208 4 H -0.187 1.187 5 H -0.206 1.206 6 H -0.198 1.198 7 C -0.581 4.581 8 H 0.071 0.929 9 C 0.141 3.859 10 N -0.330 5.330 11 C 0.020 3.980 12 C -0.212 4.212 13 C -0.200 4.200 14 C -0.200 4.200 15 C 0.286 3.714 16 O -0.481 6.481 17 C -0.153 4.153 18 C -0.066 4.066 19 C -0.191 4.191 20 C -0.249 4.249 21 C -0.103 4.103 22 O -0.082 6.082 23 C -0.107 4.107 24 H 0.076 0.924 25 H 0.037 0.963 26 H 0.014 0.986 27 H 0.090 0.910 28 H 0.117 0.883 29 H 0.098 0.902 30 H 0.129 0.871 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.126 0.874 34 H 0.121 0.879 35 H 0.133 0.867 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.169 0.831 39 H 0.252 0.748 40 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 12.093 -18.575 -2.169 22.271 hybrid contribution -0.328 1.682 0.178 1.723 sum 11.765 -16.893 -1.991 20.682 Atomic orbital electron populations 1.70056 1.07607 1.28147 1.51067 1.25866 0.95791 1.03073 0.94398 0.85409 0.78262 0.78281 0.78821 1.18730 1.20596 1.19759 1.21709 0.93239 0.91992 1.51206 0.92897 1.18689 0.88011 0.83861 0.95354 1.48188 1.44801 1.33620 1.06371 1.21212 0.97096 0.94913 0.84770 1.22644 0.99776 0.95334 1.03484 1.23165 1.02351 0.93232 1.01233 1.23016 1.04022 1.02925 0.90053 1.21445 0.82433 0.84640 0.82929 1.90626 1.60657 1.63912 1.32904 1.21642 0.98216 0.96123 0.99333 1.19530 0.97003 0.94961 0.95155 1.20450 0.94854 0.94915 1.08931 1.22008 0.94167 0.99405 1.09362 1.24641 0.93324 0.87535 1.04802 1.84080 1.14896 1.37874 1.71385 1.24283 0.90233 0.90190 1.06012 0.92411 0.96277 0.98632 0.91032 0.88346 0.90152 0.87147 0.88077 0.88182 0.87446 0.87870 0.86745 0.91448 0.92489 0.83095 0.74754 0.76019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.20 13.29 21.45 0.28 -56.91 16 2 C 0.01 0.44 5.46 84.65 0.46 0.91 16 3 Si 0.97 45.56 29.54 68.60 2.03 47.59 16 4 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 7 C -0.54 -32.00 9.39 25.60 0.24 -31.76 16 8 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 9 C 0.26 14.57 5.16 85.64 0.44 15.01 16 10 N -0.60 -26.10 2.46 -826.14 -2.03 -28.13 16 11 C 0.14 4.57 5.49 86.38 0.47 5.05 16 12 C -0.19 -5.21 5.95 -10.79 -0.06 -5.28 16 13 C -0.16 -3.07 9.18 30.60 0.28 -2.79 16 14 C -0.16 -3.24 10.25 30.60 0.31 -2.92 16 15 C 0.50 21.11 7.67 87.66 0.67 21.78 16 16 O -0.60 -31.84 15.56 -3.01 -0.05 -31.89 16 17 C -0.11 -3.27 4.23 29.85 0.13 -3.15 16 18 C -0.03 -0.81 5.02 29.85 0.15 -0.66 16 19 C -0.19 -4.36 5.42 -19.94 -0.11 -4.47 16 20 C -0.23 -4.67 10.87 22.19 0.24 -4.43 16 21 C -0.04 -0.58 12.09 66.97 0.81 0.23 16 22 O -0.19 -3.53 10.65 -2.51 -0.03 -3.56 16 23 C -0.04 -0.77 12.01 66.97 0.80 0.04 16 24 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 25 H 0.02 1.09 8.07 -2.39 -0.02 1.07 16 26 H 0.00 -0.28 7.42 -2.39 -0.02 -0.30 16 27 H 0.07 2.46 8.07 -2.39 -0.02 2.44 16 28 H 0.10 2.50 6.17 -2.38 -0.01 2.49 16 29 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 30 H 0.11 1.74 7.87 -2.39 -0.02 1.72 16 31 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.10 2.63 7.40 -2.39 -0.02 2.61 16 35 H 0.11 2.71 6.84 -2.39 -0.02 2.69 16 36 H 0.07 2.01 8.10 -2.39 -0.02 1.99 16 37 H 0.06 1.85 8.10 -2.38 -0.02 1.83 16 38 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 39 H 0.24 1.71 8.06 -2.91 -0.02 1.69 16 40 H 0.22 2.96 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -76.83 341.92 6.07 -70.76 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: 1.02 Total: 14.58 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: 4.84 Total: -12.44 kcal Atomic # 7 Polarization: -83.30 SS G_CDS: -1.74 Total: -85.04 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: -0.07 Total: -35.45 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -76.83 6.07 -70.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175373712.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.430 kcal (2) G-P(sol) polarization free energy of solvation -76.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds