Wall clock time and date at job start Mon Mar 30 2020 02:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34220 * 117.00370 * 2 1 4 4 O 1.20827 * 119.99734 * 359.97438 * 3 2 1 5 5 C 1.50705 * 120.00428 * 179.97438 * 3 2 1 6 6 N 1.46503 * 109.47086 * 180.02562 * 5 3 2 7 7 C 1.36942 * 119.99768 * 264.00952 * 6 5 3 8 8 H 1.07999 * 119.99931 * 196.18429 * 7 6 5 9 9 C 1.38818 * 119.99750 * 16.18142 * 7 6 5 10 10 N 1.31617 * 119.99878 * 22.17113 * 9 7 6 11 11 Si 1.86791 * 119.99695 * 202.16521 * 9 7 6 12 12 H 1.48503 * 109.47239 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47071 * 120.00428 * 11 9 7 14 14 H 1.48500 * 109.47634 * 240.00322 * 11 9 7 15 15 C 1.46498 * 120.00119 * 84.01058 * 6 5 3 16 16 C 1.50698 * 109.47017 * 89.99980 * 15 6 5 17 17 C 1.38238 * 119.99898 * 269.72224 * 16 15 6 18 18 C 1.38236 * 120.00197 * 179.76395 * 17 16 15 19 19 C 1.50695 * 120.00094 * 180.25609 * 18 17 16 20 20 C 1.38241 * 119.99383 * 0.49263 * 18 17 16 21 21 C 1.38233 * 120.00074 * 359.78535 * 20 18 17 22 22 C 1.50701 * 119.99586 * 179.97438 * 21 20 18 23 23 C 1.38230 * 120.00014 * 89.99833 * 16 15 6 24 24 H 1.08992 * 109.47456 * 300.00033 * 1 2 3 25 25 H 1.08996 * 109.46791 * 60.00737 * 1 2 3 26 26 H 1.08999 * 109.47035 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46817 * 299.99755 * 5 3 2 28 28 H 1.08995 * 109.47078 * 59.99773 * 5 3 2 29 29 H 0.97002 * 119.99231 * 179.97438 * 10 9 7 30 30 H 1.09003 * 109.46681 * 209.99638 * 15 6 5 31 31 H 1.08996 * 109.47325 * 329.99527 * 15 6 5 32 32 H 1.08002 * 119.99974 * 0.02562 * 17 16 15 33 33 H 1.09005 * 109.47000 * 270.23579 * 19 18 17 34 34 H 1.08993 * 109.47635 * 30.23216 * 19 18 17 35 35 H 1.09006 * 109.47069 * 150.23989 * 19 18 17 36 36 H 1.08000 * 119.99257 * 179.76372 * 20 18 17 37 37 H 1.08999 * 109.47509 * 269.98015 * 22 21 20 38 38 H 1.09006 * 109.47359 * 29.98245 * 22 21 20 39 39 H 1.08998 * 109.47005 * 149.97368 * 22 21 20 40 40 H 1.07997 * 120.00352 * 0.02562 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9818 2.6797 0.0011 7 6 4.2950 3.3014 -1.1782 8 1 4.8426 4.2323 -1.1690 9 6 3.9087 2.7352 -2.3853 10 7 2.9067 1.8826 -2.4215 11 14 4.8110 3.1834 -3.9582 12 1 5.8908 4.1551 -3.6498 13 1 5.4030 1.9593 -4.5553 14 1 3.8571 3.7917 -4.9201 15 6 4.0620 3.4194 1.2631 16 6 5.4446 3.2723 1.8444 17 6 5.7230 2.2315 2.7105 18 6 6.9925 2.0937 3.2400 19 6 7.2976 0.9558 4.1797 20 6 7.9808 3.0027 2.9113 21 6 7.7007 4.0468 2.0498 22 6 8.7780 5.0380 1.6920 23 6 6.4327 4.1815 1.5161 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.9557 0.7809 0.8909 28 1 3.9565 0.7805 -0.8891 29 1 2.6366 1.4873 -3.2651 30 1 3.8552 4.4738 1.0799 31 1 3.3287 3.0217 1.9646 32 1 4.9499 1.5235 2.9702 33 1 7.0976 1.2676 5.2049 34 1 6.6691 0.1007 3.9310 35 1 8.3467 0.6761 4.0831 36 1 8.9716 2.8973 3.3280 37 1 8.7639 5.8630 2.4042 38 1 9.7501 4.5460 1.7251 39 1 8.5994 5.4220 0.6876 40 1 6.2139 4.9974 0.8433 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177619932.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:11 Heat of formation + Delta-G solvation = -46.786472 kcal Electronic energy + Delta-G solvation = -21886.026384 eV Core-core repulsion = 18666.379229 eV Total energy + Delta-G solvation = -3219.647155 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.24712 -38.86368 -36.02502 -34.63466 -33.17812 -32.53563 -30.61193 -28.22501 -27.18139 -26.37342 -25.99675 -25.60881 -22.28012 -20.38916 -20.16404 -19.46629 -16.88825 -16.29009 -15.85393 -15.46848 -15.18267 -15.09104 -14.76312 -14.04998 -13.85123 -13.53667 -13.24808 -13.03446 -12.83702 -12.55818 -12.35478 -12.24297 -12.21211 -11.85457 -11.39151 -11.22439 -11.13184 -10.96686 -10.77994 -10.67831 -10.52328 -10.33109 -10.08284 -9.98979 -9.63614 -9.16440 -8.55256 -8.12415 -8.09136 -7.05323 -5.91630 -3.24095 1.83027 1.86739 3.35436 3.43602 3.45951 3.83660 3.99474 4.19986 4.50119 5.07896 5.15404 5.24260 5.38158 5.47574 5.50987 5.56691 5.72177 5.74305 5.78936 5.80499 5.84788 5.91540 6.00315 6.03360 6.07827 6.12033 6.19963 6.30785 6.50777 6.62861 6.64085 6.76421 6.97726 7.01777 7.04801 7.26894 7.52853 7.67960 7.75621 8.17946 9.01467 9.35609 9.70428 10.13361 11.19361 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013954 B = 0.006702 C = 0.004962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.057664 B = 4176.625473 C = 5641.863566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.383 6.383 3 C 0.464 3.536 4 O -0.506 6.506 5 C 0.190 3.810 6 N -0.558 5.558 7 C -0.251 4.251 8 H 0.080 0.920 9 C 0.001 3.999 10 N -0.902 5.902 11 Si 0.907 3.093 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.292 1.292 15 C 0.180 3.820 16 C -0.070 4.070 17 C -0.119 4.119 18 C -0.091 4.091 19 C -0.109 4.109 20 C -0.135 4.135 21 C -0.090 4.090 22 C -0.110 4.110 23 C -0.105 4.105 24 H 0.045 0.955 25 H 0.053 0.947 26 H 0.080 0.920 27 H 0.051 0.949 28 H 0.114 0.886 29 H 0.256 0.744 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.114 0.886 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.111 0.889 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.293 -1.552 10.250 12.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.300 6.300 3 C 0.304 3.696 4 O -0.391 6.391 5 C 0.061 3.939 6 N -0.277 5.277 7 C -0.380 4.380 8 H 0.097 0.903 9 C -0.197 4.197 10 N -0.548 5.548 11 Si 0.737 3.263 12 H -0.202 1.202 13 H -0.215 1.215 14 H -0.219 1.219 15 C 0.054 3.946 16 C -0.073 4.073 17 C -0.138 4.138 18 C -0.091 4.091 19 C -0.166 4.166 20 C -0.153 4.153 21 C -0.090 4.090 22 C -0.167 4.167 23 C -0.123 4.123 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.099 0.901 27 H 0.069 0.931 28 H 0.131 0.869 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.132 0.868 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.129 0.871 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.987 -1.287 10.080 11.794 hybrid contribution -0.046 0.225 -1.149 1.171 sum 5.941 -1.061 8.931 10.779 Atomic orbital electron populations 1.22858 0.79832 1.01332 1.01266 1.86546 1.20980 1.36769 1.85731 1.25626 0.93582 0.80179 0.70237 1.90463 1.66706 1.36485 1.45462 1.20282 0.85265 0.86816 1.01568 1.43873 1.74772 1.06982 1.02054 1.19280 1.28853 1.07132 0.82712 0.90254 1.24819 0.96825 1.00108 0.97928 1.69886 1.25020 1.34146 1.25697 0.86144 0.79322 0.77703 0.83143 1.20226 1.21472 1.21896 1.19812 0.89660 0.97211 0.87965 1.20957 0.98714 0.93631 0.93980 1.20871 0.95903 0.98452 0.98550 1.19786 0.93914 0.96787 0.98652 1.20730 1.01692 0.96255 0.97930 1.20688 0.98510 0.95835 1.00293 1.19830 0.95068 0.96525 0.97618 1.20738 0.96655 0.97624 1.01668 1.20896 0.92161 0.99736 0.99526 0.93620 0.92847 0.90118 0.93134 0.86857 0.93335 0.92065 0.93401 0.86842 0.91790 0.91736 0.92097 0.87130 0.91779 0.92125 0.91627 0.86445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 10.56 101.05 1.07 1.82 16 2 O -0.38 -8.38 10.56 -39.23 -0.41 -8.80 16 3 C 0.46 11.40 6.18 36.01 0.22 11.63 16 4 O -0.51 -13.95 15.88 -18.75 -0.30 -14.25 16 5 C 0.19 4.49 5.49 -5.19 -0.03 4.46 16 6 N -0.56 -13.58 2.01 -175.98 -0.35 -13.94 16 7 C -0.25 -6.68 9.66 -15.05 -0.15 -6.82 16 8 H 0.08 2.07 7.92 -52.49 -0.42 1.65 16 9 C 0.00 0.03 4.86 -17.43 -0.08 -0.06 16 10 N -0.90 -25.64 9.31 55.49 0.52 -25.13 16 11 Si 0.91 21.62 29.61 -169.99 -5.03 16.59 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 15 C 0.18 3.75 5.76 -5.20 -0.03 3.72 16 16 C -0.07 -1.29 5.46 -104.63 -0.57 -1.87 16 17 C -0.12 -1.98 9.36 -39.58 -0.37 -2.35 16 18 C -0.09 -1.35 5.88 -104.62 -0.62 -1.97 16 19 C -0.11 -1.25 10.01 36.00 0.36 -0.89 16 20 C -0.13 -1.96 9.36 -39.58 -0.37 -2.33 16 21 C -0.09 -1.39 5.88 -104.62 -0.62 -2.00 16 22 C -0.11 -1.35 10.01 36.01 0.36 -0.99 16 23 C -0.10 -1.83 9.36 -39.59 -0.37 -2.20 16 24 H 0.05 0.77 8.13 -51.93 -0.42 0.35 16 25 H 0.05 1.02 8.13 -51.93 -0.42 0.60 16 26 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.05 1.04 8.12 -51.93 -0.42 0.61 16 28 H 0.11 2.90 6.35 -51.93 -0.33 2.57 16 29 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.06 1.29 7.98 -51.93 -0.41 0.88 16 31 H 0.05 0.97 8.01 -51.93 -0.42 0.55 16 32 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 35 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 36 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 39 H 0.06 0.80 8.09 -51.93 -0.42 0.38 16 40 H 0.12 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 340.43 15.07 5.13 5.13 Total: -1.00 -31.44 340.43 -7.84 -39.27 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -6.19 Total: 0.97 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -1.19 Total: 0.15 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.16 Total: -39.06 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.71 Total: -23.05 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.44 -7.84 -39.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177619932.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.513 kcal (2) G-P(sol) polarization free energy of solvation -31.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds