Wall clock time and date at job start Mon Mar 30 2020 02:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34220 * 117.00370 * 2 1 4 4 O 1.20827 * 119.99734 * 359.97438 * 3 2 1 5 5 C 1.50705 * 120.00428 * 179.97438 * 3 2 1 6 6 N 1.46503 * 109.47086 * 180.02562 * 5 3 2 7 7 C 1.36942 * 119.99768 * 264.00952 * 6 5 3 8 8 H 1.07999 * 119.99931 * 196.18429 * 7 6 5 9 9 C 1.38818 * 119.99750 * 16.18142 * 7 6 5 10 10 N 1.31617 * 119.99878 * 22.17113 * 9 7 6 11 11 Si 1.86791 * 119.99695 * 202.16521 * 9 7 6 12 12 H 1.48503 * 109.47239 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47071 * 120.00428 * 11 9 7 14 14 H 1.48500 * 109.47634 * 240.00322 * 11 9 7 15 15 C 1.46498 * 120.00119 * 84.01058 * 6 5 3 16 16 C 1.50698 * 109.47017 * 89.99980 * 15 6 5 17 17 C 1.38238 * 119.99898 * 269.72224 * 16 15 6 18 18 C 1.38236 * 120.00197 * 179.76395 * 17 16 15 19 19 C 1.50695 * 120.00094 * 180.25609 * 18 17 16 20 20 C 1.38241 * 119.99383 * 0.49263 * 18 17 16 21 21 C 1.38233 * 120.00074 * 359.78535 * 20 18 17 22 22 C 1.50701 * 119.99586 * 179.97438 * 21 20 18 23 23 C 1.38230 * 120.00014 * 89.99833 * 16 15 6 24 24 H 1.08992 * 109.47456 * 300.00033 * 1 2 3 25 25 H 1.08996 * 109.46791 * 60.00737 * 1 2 3 26 26 H 1.08999 * 109.47035 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46817 * 299.99755 * 5 3 2 28 28 H 1.08995 * 109.47078 * 59.99773 * 5 3 2 29 29 H 0.97002 * 119.99231 * 179.97438 * 10 9 7 30 30 H 1.09003 * 109.46681 * 209.99638 * 15 6 5 31 31 H 1.08996 * 109.47325 * 329.99527 * 15 6 5 32 32 H 1.08002 * 119.99974 * 0.02562 * 17 16 15 33 33 H 1.09005 * 109.47000 * 270.23579 * 19 18 17 34 34 H 1.08993 * 109.47635 * 30.23216 * 19 18 17 35 35 H 1.09006 * 109.47069 * 150.23989 * 19 18 17 36 36 H 1.08000 * 119.99257 * 179.76372 * 20 18 17 37 37 H 1.08999 * 109.47509 * 269.98015 * 22 21 20 38 38 H 1.09006 * 109.47359 * 29.98245 * 22 21 20 39 39 H 1.08998 * 109.47005 * 149.97368 * 22 21 20 40 40 H 1.07997 * 120.00352 * 0.02562 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9818 2.6797 0.0011 7 6 4.2950 3.3014 -1.1782 8 1 4.8426 4.2323 -1.1690 9 6 3.9087 2.7352 -2.3853 10 7 2.9067 1.8826 -2.4215 11 14 4.8110 3.1834 -3.9582 12 1 5.8908 4.1551 -3.6498 13 1 5.4030 1.9593 -4.5553 14 1 3.8571 3.7917 -4.9201 15 6 4.0620 3.4194 1.2631 16 6 5.4446 3.2723 1.8444 17 6 5.7230 2.2315 2.7105 18 6 6.9925 2.0937 3.2400 19 6 7.2976 0.9558 4.1797 20 6 7.9808 3.0027 2.9113 21 6 7.7007 4.0468 2.0498 22 6 8.7780 5.0380 1.6920 23 6 6.4327 4.1815 1.5161 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.9557 0.7809 0.8909 28 1 3.9565 0.7805 -0.8891 29 1 2.6366 1.4873 -3.2651 30 1 3.8552 4.4738 1.0799 31 1 3.3287 3.0217 1.9646 32 1 4.9499 1.5235 2.9702 33 1 7.0976 1.2676 5.2049 34 1 6.6691 0.1007 3.9310 35 1 8.3467 0.6761 4.0831 36 1 8.9716 2.8973 3.3280 37 1 8.7639 5.8630 2.4042 38 1 9.7501 4.5460 1.7251 39 1 8.5994 5.4220 0.6876 40 1 6.2139 4.9974 0.8433 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177619932.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:11 Heat of formation + Delta-G solvation = -62.470356 kcal Electronic energy + Delta-G solvation = -21886.706489 eV Core-core repulsion = 18666.379229 eV Total energy + Delta-G solvation = -3220.327260 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.89622 -40.33822 -37.79649 -36.52126 -34.26996 -34.18470 -32.35009 -29.93416 -28.32045 -27.77354 -27.36920 -27.25959 -24.07766 -21.88219 -21.46664 -21.09177 -18.82888 -18.15635 -17.33114 -17.17492 -16.80934 -16.59463 -16.44437 -15.56093 -15.32667 -15.15298 -14.66944 -14.25447 -13.99273 -13.91415 -13.72754 -13.71945 -13.40855 -13.24983 -13.00037 -12.81876 -12.74436 -12.48315 -12.34619 -12.21767 -12.00943 -11.91536 -11.90627 -11.68458 -11.42154 -11.10254 -10.57130 -9.41048 -9.29539 -8.98768 -7.96941 -5.30262 0.59566 0.61296 1.44582 1.47418 1.57466 1.93800 2.28405 2.52427 2.92923 3.24469 3.66432 3.98716 4.02583 4.09778 4.34479 4.38336 4.43781 4.47359 4.49655 4.59334 4.61867 4.67458 4.80724 4.83366 4.84273 4.87673 4.93575 5.05967 5.10217 5.12154 5.15182 5.39663 5.48022 5.60063 5.78837 5.79692 5.89083 5.94189 6.19362 6.31148 6.99672 7.43931 7.74582 8.14167 9.12034 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013954 B = 0.006702 C = 0.004962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.057664 B = 4176.625473 C = 5641.863566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.385 6.385 3 C 0.467 3.533 4 O -0.544 6.544 5 C 0.192 3.808 6 N -0.571 5.571 7 C -0.253 4.253 8 H 0.077 0.923 9 C -0.049 4.049 10 N -0.929 5.929 11 Si 0.968 3.032 12 H -0.268 1.268 13 H -0.287 1.287 14 H -0.300 1.300 15 C 0.185 3.815 16 C -0.087 4.087 17 C -0.133 4.133 18 C -0.090 4.090 19 C -0.107 4.107 20 C -0.135 4.135 21 C -0.093 4.093 22 C -0.108 4.108 23 C -0.128 4.128 24 H 0.053 0.947 25 H 0.034 0.966 26 H 0.128 0.872 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.249 0.751 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.118 0.882 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.142 0.858 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.059 0.941 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.261 -2.376 11.641 14.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.302 6.302 3 C 0.309 3.691 4 O -0.432 6.432 5 C 0.063 3.937 6 N -0.290 5.290 7 C -0.383 4.383 8 H 0.095 0.905 9 C -0.244 4.244 10 N -0.575 5.575 11 Si 0.796 3.204 12 H -0.192 1.192 13 H -0.213 1.213 14 H -0.228 1.228 15 C 0.060 3.940 16 C -0.090 4.090 17 C -0.151 4.151 18 C -0.090 4.090 19 C -0.164 4.164 20 C -0.153 4.153 21 C -0.093 4.093 22 C -0.165 4.165 23 C -0.147 4.147 24 H 0.072 0.928 25 H 0.053 0.947 26 H 0.146 0.854 27 H 0.099 0.901 28 H 0.110 0.890 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.136 0.864 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.160 0.840 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.078 0.922 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.972 -2.118 11.502 14.153 hybrid contribution -0.679 0.464 -1.474 1.688 sum 7.293 -1.653 10.028 12.509 Atomic orbital electron populations 1.23185 0.77363 1.04290 1.00794 1.86499 1.23364 1.35222 1.85116 1.25742 0.93998 0.80260 0.69126 1.90436 1.67590 1.37808 1.47375 1.20261 0.84930 0.86693 1.01827 1.44032 1.75019 1.07434 1.02530 1.19509 1.27978 1.06957 0.83845 0.90535 1.25500 0.97595 1.00783 1.00491 1.70030 1.26336 1.35537 1.25647 0.85201 0.78141 0.77414 0.79602 1.19219 1.21348 1.22773 1.19784 0.91586 0.95873 0.86765 1.20660 0.97310 0.95365 0.95642 1.20989 0.97262 0.98134 0.98749 1.20199 0.92962 0.97584 0.98247 1.20790 1.02887 0.94925 0.97790 1.21100 0.99829 0.94922 0.99429 1.20181 0.94740 0.97337 0.97017 1.20785 0.96401 0.97542 1.01756 1.20932 0.93407 0.99805 1.00519 0.92794 0.94672 0.85432 0.90137 0.88951 0.94115 0.93555 0.93416 0.86357 0.90138 0.91434 0.90326 0.84009 0.90117 0.90143 0.92204 0.87657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.31 10.56 113.37 1.20 2.51 16 2 O -0.39 -16.75 10.56 -51.32 -0.54 -17.29 16 3 C 0.47 23.30 6.18 71.24 0.44 23.74 16 4 O -0.54 -30.73 15.88 21.96 0.35 -30.38 16 5 C 0.19 9.21 5.49 85.63 0.47 9.68 16 6 N -0.57 -28.46 2.01 -710.68 -1.43 -29.89 16 7 C -0.25 -13.80 9.66 84.03 0.81 -12.99 16 8 H 0.08 4.11 7.92 -2.91 -0.02 4.08 16 9 C -0.05 -2.71 4.86 84.86 0.41 -2.30 16 10 N -0.93 -54.07 9.31 21.65 0.20 -53.86 16 11 Si 0.97 45.29 29.61 68.60 2.03 47.33 16 12 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 13 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 14 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 15 C 0.19 7.97 5.76 85.63 0.49 8.47 16 16 C -0.09 -3.25 5.46 -19.87 -0.11 -3.36 16 17 C -0.13 -4.29 9.36 22.27 0.21 -4.08 16 18 C -0.09 -2.43 5.88 -19.87 -0.12 -2.55 16 19 C -0.11 -2.06 10.01 71.23 0.71 -1.35 16 20 C -0.13 -3.50 9.36 22.27 0.21 -3.30 16 21 C -0.09 -2.68 5.88 -19.87 -0.12 -2.80 16 22 C -0.11 -2.38 10.01 71.24 0.71 -1.67 16 23 C -0.13 -4.50 9.36 22.27 0.21 -4.29 16 24 H 0.05 1.78 8.13 -2.39 -0.02 1.76 16 25 H 0.03 1.34 8.13 -2.39 -0.02 1.32 16 26 H 0.13 3.19 8.14 -2.39 -0.02 3.17 16 27 H 0.08 3.29 8.12 -2.39 -0.02 3.27 16 28 H 0.09 4.83 6.35 -2.39 -0.02 4.82 16 29 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 30 H 0.05 2.06 7.98 -2.39 -0.02 2.04 16 31 H 0.05 2.00 8.01 -2.39 -0.02 1.98 16 32 H 0.12 3.59 8.06 -2.91 -0.02 3.57 16 33 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 34 H 0.07 1.27 8.09 -2.39 -0.02 1.25 16 35 H 0.08 1.25 8.09 -2.38 -0.02 1.23 16 36 H 0.14 2.79 8.06 -2.91 -0.02 2.76 16 37 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.08 1.45 8.09 -2.38 -0.02 1.43 16 39 H 0.06 1.38 8.09 -2.39 -0.02 1.36 16 40 H 0.11 3.83 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -68.84 340.43 7.15 -61.69 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 1.01 Total: 16.71 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: 5.53 Total: 5.70 kcal Atomic # 7 Polarization: -82.53 SS G_CDS: -1.23 Total: -83.76 kcal Atomic # 8 Polarization: -47.48 SS G_CDS: -0.19 Total: -47.67 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.33 kcal Total: -68.84 7.15 -61.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177619932.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.781 kcal (2) G-P(sol) polarization free energy of solvation -68.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds