Wall clock time and date at job start Mon Mar 30 2020 02:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38163 * 119.97218 * 2 1 4 4 C 1.38714 * 119.94302 * 180.02562 * 3 2 1 5 5 O 1.35902 * 120.05874 * 179.97438 * 4 3 2 6 6 C 1.38750 * 119.88917 * 0.02562 * 4 3 2 7 7 C 1.50709 * 120.03030 * 179.97438 * 6 4 3 8 8 N 1.46900 * 109.46751 * 285.00254 * 7 6 4 9 9 C 1.47964 * 110.99821 * 190.00052 * 8 7 6 10 10 C 1.53934 * 86.17858 * 222.41222 * 9 8 7 11 11 O 1.42894 * 113.73672 * 269.25004 * 10 9 8 12 12 C 1.50701 * 113.72977 * 138.07330 * 10 9 8 13 13 H 1.08002 * 120.00365 * 6.88721 * 12 10 9 14 14 C 1.37879 * 119.99999 * 186.88296 * 12 10 9 15 15 N 1.31513 * 120.00142 * 178.39239 * 14 12 10 16 16 Si 1.86800 * 119.99794 * 358.39138 * 14 12 10 17 17 H 1.48502 * 109.46909 * 269.99833 * 16 14 12 18 18 H 1.48499 * 109.47319 * 30.00170 * 16 14 12 19 19 H 1.48498 * 109.46941 * 149.99829 * 16 14 12 20 20 C 1.48182 * 111.07424 * 90.56527 * 8 7 6 21 21 C 1.38126 * 119.94599 * 0.25446 * 6 4 3 22 22 C 1.38249 * 119.97016 * 180.02562 * 2 1 3 23 23 C 1.50696 * 119.94441 * 359.96975 * 22 2 1 24 24 H 1.08994 * 109.47493 * 89.99929 * 1 2 3 25 25 H 1.09000 * 109.46806 * 210.00241 * 1 2 3 26 26 H 1.09002 * 109.47030 * 329.99342 * 1 2 3 27 27 H 1.07999 * 120.03136 * 0.05121 * 3 2 1 28 28 H 0.96696 * 113.99879 * 270.02613 * 5 4 3 29 29 H 1.08999 * 109.47120 * 164.99712 * 7 6 4 30 30 H 1.09000 * 109.46781 * 45.00024 * 7 6 4 31 31 H 1.08994 * 113.76380 * 108.09132 * 9 8 7 32 32 H 1.09005 * 113.85644 * 336.74430 * 9 8 7 33 33 H 0.96694 * 114.00278 * 162.47687 * 11 10 9 34 34 H 0.97005 * 120.00152 * 358.16611 * 15 14 12 35 35 H 1.09002 * 113.75758 * 23.23657 * 20 8 7 36 36 H 1.08999 * 113.82586 * 251.80741 * 20 8 7 37 37 H 1.08000 * 119.97531 * 179.72568 * 21 6 4 38 38 H 1.09001 * 109.46646 * 90.00460 * 23 22 2 39 39 H 1.08999 * 109.46889 * 210.00150 * 23 22 2 40 40 H 1.09004 * 109.47087 * 330.00403 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1969 0.0000 4 6 3.5844 1.1962 -0.0005 5 8 4.2657 2.3721 -0.0011 6 6 4.2752 -0.0071 -0.0016 7 6 5.7823 -0.0116 -0.0028 8 7 6.2719 0.3460 -1.3408 9 6 7.7304 0.1221 -1.4491 10 6 7.7778 1.4685 -2.1938 11 8 7.6326 1.3478 -3.6102 12 6 8.9394 2.3417 -1.7947 13 1 9.7018 1.9573 -1.1334 14 6 9.0290 3.6314 -2.2741 15 7 10.0257 4.4039 -1.9009 16 14 7.7345 4.2813 -3.4536 17 1 8.1508 3.9978 -4.8506 18 1 6.4358 3.6155 -3.1792 19 1 7.5878 5.7474 -3.2686 20 6 6.4665 1.8099 -1.4632 21 6 3.5805 -1.2010 -0.0075 22 6 2.1976 -1.1976 -0.0005 23 6 1.4422 -2.5016 -0.0004 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8899 0.5139 27 1 1.6573 2.1322 0.0008 28 1 4.4621 2.7123 -0.8846 29 1 6.1428 -1.0054 0.2625 30 1 6.1482 0.7137 0.7239 31 1 7.9987 -0.7328 -2.0697 32 1 8.2502 0.1316 -0.4910 33 1 7.3948 2.1738 -4.0530 34 1 10.6832 4.0754 -1.2678 35 1 6.6143 2.3146 -0.5085 36 1 5.7268 2.3011 -2.0954 37 1 4.1177 -2.1379 -0.0128 38 1 1.2597 -2.8157 -1.0281 39 1 2.0304 -3.2622 0.5130 40 1 0.4901 -2.3699 0.5138 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191914805.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:46 Heat of formation + Delta-G solvation = -53.112419 kcal Electronic energy + Delta-G solvation = -21998.622539 eV Core-core repulsion = 18778.701070 eV Total energy + Delta-G solvation = -3219.921469 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.59401 -40.47408 -38.10383 -36.69238 -34.67040 -34.27897 -32.63298 -30.77468 -28.53648 -27.41993 -27.25719 -25.96621 -23.55074 -23.16095 -21.25869 -20.86836 -19.97560 -18.82069 -17.77583 -17.29331 -17.04476 -16.47706 -16.33576 -15.88343 -15.24861 -15.06428 -14.93890 -14.70158 -14.54907 -14.12542 -13.96699 -13.86379 -13.55296 -13.31900 -13.18645 -12.84470 -12.64968 -12.42831 -12.30112 -12.18727 -12.01757 -11.96982 -11.53844 -11.31793 -11.19178 -10.81961 -10.46270 -9.85635 -9.62420 -9.19668 -8.79894 -6.59991 0.26888 0.37143 1.33981 1.44740 1.59571 2.38913 2.54634 2.84469 3.04203 3.32137 3.55987 3.71915 3.86911 3.94717 3.99380 4.06549 4.15252 4.32318 4.32920 4.52897 4.53415 4.67565 4.70676 4.75432 4.78051 4.81050 4.89161 4.98681 5.03595 5.10171 5.19517 5.22956 5.33042 5.41972 5.61377 5.67146 5.70625 5.86041 5.97214 6.06768 6.36095 6.71251 6.83126 7.25313 8.51112 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028111 B = 0.004878 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.812907 B = 5739.126124 C = 6157.749842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.079 4.079 3 C -0.153 4.153 4 C 0.090 3.910 5 O -0.512 6.512 6 C -0.111 4.111 7 C 0.063 3.937 8 N -0.466 5.466 9 C 0.026 3.974 10 C 0.187 3.813 11 O -0.560 6.560 12 C -0.617 4.617 13 H 0.026 0.974 14 C -0.016 4.016 15 N -0.931 5.931 16 Si 1.074 2.926 17 H -0.258 1.258 18 H -0.231 1.231 19 H -0.286 1.286 20 C -0.017 4.017 21 C -0.098 4.098 22 C -0.102 4.102 23 C -0.111 4.111 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.071 0.929 27 H 0.137 0.863 28 H 0.392 0.608 29 H 0.088 0.912 30 H 0.041 0.959 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.357 0.643 34 H 0.255 0.745 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.136 0.864 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.190 -10.492 2.960 23.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.080 4.080 3 C -0.172 4.172 4 C 0.045 3.955 5 O -0.326 6.326 6 C -0.112 4.112 7 C -0.065 4.065 8 N -0.188 5.188 9 C -0.103 4.103 10 C 0.146 3.854 11 O -0.370 6.370 12 C -0.655 4.655 13 H 0.045 0.955 14 C -0.215 4.215 15 N -0.566 5.566 16 Si 0.895 3.105 17 H -0.183 1.183 18 H -0.156 1.156 19 H -0.212 1.212 20 C -0.146 4.146 21 C -0.116 4.116 22 C -0.102 4.102 23 C -0.168 4.168 24 H 0.099 0.901 25 H 0.106 0.894 26 H 0.090 0.910 27 H 0.154 0.846 28 H 0.252 0.748 29 H 0.107 0.893 30 H 0.059 0.941 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.208 0.792 34 H 0.064 0.936 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.154 0.846 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -21.932 -10.215 2.403 24.313 hybrid contribution 2.154 0.116 1.292 2.514 sum -19.778 -10.099 3.695 22.513 Atomic orbital electron populations 1.20911 0.88647 1.03990 1.03355 1.19975 0.97695 0.91481 0.98816 1.21437 0.92598 0.99509 1.03625 1.18575 0.90555 0.84963 1.01408 1.84800 1.76540 1.36535 1.34741 1.20081 0.95019 0.93562 1.02581 1.21480 0.92053 1.01639 0.91322 1.68610 1.13855 1.10307 1.26040 1.23881 0.89089 0.98321 0.98995 1.20543 0.91955 0.94007 0.78852 1.86439 1.92877 1.36761 1.20942 1.22584 1.10388 1.00032 1.32478 0.95525 1.27357 1.00822 0.93893 0.99400 1.70921 1.13786 1.39606 1.32275 0.83829 0.74863 0.76484 0.75299 1.18326 1.15552 1.21208 1.25038 0.98486 0.90219 1.00865 1.21001 0.94109 0.96925 0.99574 1.20104 0.93177 0.96455 1.00448 1.20884 1.00342 0.92346 1.03192 0.90071 0.89422 0.90968 0.84550 0.74841 0.89331 0.94084 0.89542 0.91266 0.79196 0.93637 0.90985 0.89486 0.84638 0.90357 0.90912 0.89558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 9.60 71.24 0.68 -0.85 16 2 C -0.08 -1.69 5.88 -19.88 -0.12 -1.81 16 3 C -0.15 -3.92 9.64 22.37 0.22 -3.71 16 4 C 0.09 2.77 6.61 22.51 0.15 2.92 16 5 O -0.51 -16.82 11.22 -92.45 -1.04 -17.86 16 6 C -0.11 -3.43 5.47 -19.77 -0.11 -3.54 16 7 C 0.06 2.12 4.76 85.56 0.41 2.52 16 8 N -0.47 -17.78 6.14 -914.81 -5.62 -23.40 16 9 C 0.03 1.08 7.34 86.41 0.63 1.71 16 10 C 0.19 8.85 1.06 -10.89 -0.01 8.84 16 11 O -0.56 -26.27 13.26 -148.98 -1.98 -28.25 16 12 C -0.62 -34.84 9.05 25.60 0.23 -34.61 16 13 H 0.03 1.65 8.04 -2.91 -0.02 1.63 16 14 C -0.02 -0.88 5.47 84.66 0.46 -0.42 16 15 N -0.93 -57.41 13.70 21.45 0.29 -57.11 16 16 Si 1.07 46.31 24.77 68.60 1.70 48.01 16 17 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 18 H -0.23 -8.34 4.71 99.48 0.47 -7.87 16 19 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 20 C -0.02 -0.70 3.90 86.37 0.34 -0.36 16 21 C -0.10 -2.49 9.32 22.26 0.21 -2.29 16 22 C -0.10 -2.18 5.88 -19.85 -0.12 -2.30 16 23 C -0.11 -1.54 9.60 71.23 0.68 -0.86 16 24 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.09 0.89 5.94 -2.39 -0.01 0.88 16 26 H 0.07 0.89 8.08 -2.39 -0.02 0.87 16 27 H 0.14 3.04 8.06 -2.91 -0.02 3.01 16 28 H 0.39 11.60 6.30 -74.06 -0.47 11.14 16 29 H 0.09 2.64 7.89 -2.39 -0.02 2.62 16 30 H 0.04 1.51 7.25 -2.39 -0.02 1.49 16 31 H 0.09 3.48 8.14 -2.39 -0.02 3.47 16 32 H 0.07 2.88 7.88 -2.38 -0.02 2.86 16 33 H 0.36 15.06 4.33 -74.06 -0.32 14.73 16 34 H 0.25 15.99 8.71 -92.70 -0.81 15.18 16 35 H 0.07 3.11 6.82 -2.39 -0.02 3.10 16 36 H 0.09 3.24 5.26 -2.39 -0.01 3.23 16 37 H 0.14 3.00 8.00 -2.91 -0.02 2.98 16 38 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.07 0.90 8.09 -2.39 -0.02 0.88 16 40 H 0.09 0.89 5.94 -2.39 -0.01 0.87 16 Total: -1.00 -68.76 312.62 -2.97 -71.74 By element: Atomic # 1 Polarization: 41.62 SS G_CDS: 0.01 Total: 41.62 kcal Atomic # 6 Polarization: -38.41 SS G_CDS: 3.66 Total: -34.75 kcal Atomic # 7 Polarization: -75.19 SS G_CDS: -5.33 Total: -80.51 kcal Atomic # 8 Polarization: -43.09 SS G_CDS: -3.01 Total: -46.11 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 1.70 Total: 48.01 kcal Total: -68.76 -2.97 -71.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191914805.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.623 kcal (2) G-P(sol) polarization free energy of solvation -68.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds