Wall clock time and date at job start Mon Mar 30 2020 01:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 120.00058 * 2 1 4 4 H 1.48500 * 109.46845 * 239.99714 * 3 2 1 5 5 H 1.48498 * 109.47028 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47227 * 119.99556 * 3 2 1 7 7 C 1.37874 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00034 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99821 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47387 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47360 * 179.97438 * 10 9 7 12 12 N 1.46905 * 109.47039 * 180.02562 * 11 10 9 13 13 C 1.46901 * 110.99870 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.46943 * 180.02562 * 13 12 11 15 15 C 1.38241 * 119.96324 * 259.99668 * 14 13 12 16 16 C 1.38215 * 120.11138 * 179.97438 * 15 14 13 17 17 C 1.38244 * 120.11575 * 0.06480 * 16 15 14 18 18 C 1.38660 * 120.06124 * 359.97438 * 17 16 15 19 19 C 1.38656 * 119.97173 * 79.72000 * 14 13 12 20 20 O 1.36110 * 119.39551 * 359.75667 * 19 14 13 21 21 C 1.43176 * 116.68817 * 162.70451 * 20 19 14 22 22 C 1.53478 * 108.24026 * 46.30562 * 21 20 19 23 23 O 1.36103 * 119.40621 * 179.64691 * 18 17 16 24 24 H 0.97004 * 119.99990 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47558 * 59.99970 * 9 7 2 26 26 H 1.08998 * 109.47216 * 299.99633 * 9 7 2 27 27 H 1.09001 * 109.46514 * 59.99676 * 10 9 7 28 28 H 1.08998 * 109.46924 * 300.00156 * 10 9 7 29 29 H 1.09001 * 109.47393 * 60.00433 * 11 10 9 30 30 H 1.08998 * 109.47408 * 300.00078 * 11 10 9 31 31 H 1.00901 * 110.99869 * 56.04956 * 12 11 10 32 32 H 1.09004 * 109.47031 * 299.99620 * 13 12 11 33 33 H 1.08995 * 109.47111 * 59.99900 * 13 12 11 34 34 H 1.07995 * 119.94744 * 359.93382 * 15 14 13 35 35 H 1.08000 * 119.94404 * 180.08777 * 16 15 14 36 36 H 1.08000 * 119.96964 * 180.02562 * 17 16 15 37 37 H 1.09005 * 109.70840 * 165.98713 * 21 20 19 38 38 H 1.08995 * 109.71674 * 286.61690 * 21 20 19 39 39 H 1.08999 * 109.70519 * 59.97065 * 22 21 20 40 40 H 1.08997 * 109.70688 * 180.54801 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9870 0.0012 12 7 2.4348 -6.1036 0.0018 13 6 1.7345 -7.3950 0.0018 14 6 2.7440 -8.5138 0.0031 15 6 3.0530 -9.1663 -1.1758 16 6 3.9788 -10.1926 -1.1783 17 6 4.5980 -10.5710 -0.0016 18 6 4.2920 -9.9211 1.1845 19 6 3.3662 -8.8840 1.1856 20 8 3.0596 -8.2253 2.3365 21 6 3.4202 -8.8709 3.5626 22 6 4.8611 -9.3825 3.4304 23 8 4.9042 -10.3093 2.3364 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 2.8718 -3.6043 0.8905 28 1 2.8718 -3.6043 -0.8894 29 1 0.8533 -5.0451 -0.8886 30 1 0.8538 -5.0445 0.8913 31 1 3.0696 -6.0362 0.7832 32 1 1.1093 -7.4692 0.8916 33 1 1.1100 -7.4696 -0.8883 34 1 2.5697 -8.8742 -2.0964 35 1 4.2192 -10.6996 -2.1011 36 1 5.3213 -11.3729 -0.0063 37 1 3.3570 -8.1587 4.3854 38 1 2.7483 -9.7087 3.7484 39 1 5.5322 -8.5452 3.2387 40 1 5.1574 -9.8879 4.3495 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000237816209.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:02 Heat of formation + Delta-G solvation = -62.219780 kcal Electronic energy + Delta-G solvation = -20822.689828 eV Core-core repulsion = 17602.373434 eV Total energy + Delta-G solvation = -3220.316394 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.44421 -38.21618 -37.48228 -36.08978 -33.59183 -31.92552 -31.41391 -30.16717 -28.58485 -26.73985 -25.08598 -24.49412 -22.21648 -21.48624 -21.19171 -20.03840 -18.72104 -17.60690 -17.14420 -16.25058 -15.72346 -15.49289 -15.19673 -14.87536 -14.61431 -14.51582 -14.28883 -14.24080 -13.93559 -13.36146 -12.99442 -12.43380 -12.12357 -12.05824 -11.79459 -11.51155 -11.38859 -11.27854 -11.22904 -10.78329 -10.61067 -10.52042 -10.45861 -9.63251 -9.31805 -9.03587 -8.66013 -8.29922 -8.23352 -8.04592 -5.95319 -3.97224 1.12542 1.18671 2.81437 3.02358 3.36695 3.40460 3.43507 3.53713 3.96601 4.37971 4.49303 4.52740 4.61141 4.72461 4.84401 4.92698 5.07625 5.15453 5.17329 5.31464 5.40289 5.49385 5.59602 5.83268 5.89459 5.97140 5.98884 6.15162 6.39316 6.39731 6.50230 6.71763 6.79058 6.82940 7.19990 7.21808 7.41361 7.71365 7.74200 7.89725 8.05594 8.49146 9.09868 9.66397 11.16162 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026370 B = 0.003029 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.552875 B = 9242.723428 C = 9725.917962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.106 4.106 11 C 0.059 3.941 12 N -0.684 5.684 13 C 0.104 3.896 14 C -0.069 4.069 15 C -0.099 4.099 16 C -0.117 4.117 17 C -0.118 4.118 18 C 0.046 3.954 19 C 0.055 3.945 20 O -0.302 6.302 21 C 0.020 3.980 22 C 0.020 3.980 23 O -0.310 6.310 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.013 0.987 27 H 0.044 0.956 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.024 0.976 31 H 0.340 0.660 32 H 0.039 0.961 33 H 0.080 0.920 34 H 0.134 0.866 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.122 0.878 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.556 -24.060 4.423 25.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.144 4.144 11 C -0.069 4.069 12 N -0.315 5.315 13 C -0.025 4.025 14 C -0.070 4.070 15 C -0.117 4.117 16 C -0.135 4.135 17 C -0.137 4.137 18 C 0.002 3.998 19 C 0.010 3.990 20 O -0.217 6.217 21 C -0.055 4.055 22 C -0.055 4.055 23 O -0.225 6.225 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.032 0.968 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.042 0.958 31 H 0.158 0.842 32 H 0.058 0.942 33 H 0.098 0.902 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.149 0.851 37 H 0.140 0.860 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.472 -23.908 3.812 25.337 hybrid contribution 0.180 0.922 1.232 1.549 sum 7.653 -22.987 5.044 24.746 Atomic orbital electron populations 1.69958 1.06056 1.26620 1.51051 1.25028 0.94848 0.99227 0.95424 0.86655 0.79568 0.83141 0.78618 1.20215 1.21332 1.20290 1.21235 0.93034 0.91101 1.50329 0.92734 1.19061 0.94014 0.91337 0.97100 1.21616 0.99170 0.92966 1.00686 1.22134 0.94138 0.90743 0.99885 1.60659 1.20154 1.00634 1.50020 1.20716 0.93306 0.87283 1.01215 1.19285 0.98513 0.98644 0.90547 1.20891 0.98188 0.95629 0.97027 1.20902 0.97327 0.97913 0.97341 1.20405 1.02008 1.01832 0.89489 1.18849 0.95458 0.98095 0.87446 1.18759 0.96996 0.95925 0.87330 1.86362 1.78444 1.44758 1.12093 1.23624 0.95767 0.99693 0.86443 1.23669 0.97361 0.94413 0.90069 1.86354 1.73410 1.42932 1.19822 0.93012 0.96565 0.96820 0.93748 0.92566 0.91452 0.95769 0.84215 0.94246 0.90182 0.84854 0.85073 0.85084 0.86010 0.90648 0.90221 0.86220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.51 13.29 55.43 0.74 -26.78 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -15.13 9.11 -34.44 -0.31 -15.45 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.11 -2.31 5.41 -26.73 -0.14 -2.46 16 11 C 0.06 1.09 5.69 -3.82 -0.02 1.07 16 12 N -0.68 -11.06 6.49 -115.06 -0.75 -11.81 16 13 C 0.10 1.44 5.45 -4.98 -0.03 1.41 16 14 C -0.07 -0.89 5.41 -104.47 -0.56 -1.46 16 15 C -0.10 -1.10 9.66 -39.59 -0.38 -1.48 16 16 C -0.12 -1.14 10.04 -39.59 -0.40 -1.54 16 17 C -0.12 -1.26 9.96 -39.42 -0.39 -1.65 16 18 C 0.05 0.56 6.49 -39.14 -0.25 0.31 16 19 C 0.06 0.72 6.46 -39.14 -0.25 0.47 16 20 O -0.30 -3.77 9.45 -32.86 -0.31 -4.08 16 21 C 0.02 0.17 7.25 37.40 0.27 0.44 16 22 C 0.02 0.16 7.27 37.40 0.27 0.43 16 23 O -0.31 -3.44 10.43 -32.84 -0.34 -3.78 16 24 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.34 5.55 8.56 -39.29 -0.34 5.21 16 32 H 0.04 0.56 7.83 -51.93 -0.41 0.15 16 33 H 0.08 1.03 8.00 -51.93 -0.42 0.62 16 34 H 0.13 1.28 8.03 -52.49 -0.42 0.86 16 35 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 36 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 37 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 335.17 15.07 5.05 5.05 Total: -1.00 -32.88 335.17 -9.27 -42.15 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -6.20 Total: 0.10 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: -2.44 Total: -17.91 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: -0.01 Total: -38.59 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: -0.65 Total: -7.87 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.88 -9.27 -42.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237816209.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.067 kcal (2) G-P(sol) polarization free energy of solvation -32.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds