Wall clock time and date at job start Mon Mar 30 2020 02:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38268 * 119.94321 * 2 1 4 4 C 1.38139 * 120.05510 * 179.97438 * 3 2 1 5 5 C 1.38733 * 119.94507 * 359.97438 * 4 3 2 6 6 O 1.35905 * 120.05258 * 179.97438 * 5 4 3 7 7 C 1.42901 * 116.99604 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47046 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.47242 * 180.02562 * 8 7 6 10 10 C 1.50704 * 109.47188 * 179.97438 * 9 8 7 11 11 O 1.21274 * 119.99891 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99647 * 180.02562 * 10 9 8 13 13 C 1.46500 * 119.99752 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.47276 * 180.02562 * 13 12 10 15 15 H 1.07998 * 119.99953 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99763 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00441 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99587 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47401 * 59.99772 * 18 16 14 20 20 H 1.48501 * 109.47060 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47263 * 299.99484 * 18 16 14 22 22 C 1.38723 * 119.88799 * 0.25807 * 5 4 3 23 23 C 1.38145 * 119.94323 * 359.49123 * 22 5 4 24 24 H 1.08999 * 109.46991 * 90.00243 * 1 2 3 25 25 H 1.09001 * 109.46891 * 210.00393 * 1 2 3 26 26 H 1.08994 * 109.47121 * 330.00356 * 1 2 3 27 27 H 1.08008 * 119.97007 * 359.94743 * 3 2 1 28 28 H 1.08001 * 120.02451 * 179.97438 * 4 3 2 29 29 H 1.08999 * 109.47144 * 300.00205 * 7 6 5 30 30 H 1.08998 * 109.47043 * 59.99803 * 7 6 5 31 31 H 1.08999 * 109.47084 * 299.99957 * 8 7 6 32 32 H 1.08996 * 109.47090 * 59.99784 * 8 7 6 33 33 H 1.08999 * 109.47046 * 299.99980 * 9 8 7 34 34 H 1.09006 * 109.46791 * 59.99742 * 9 8 7 35 35 H 0.97004 * 120.00486 * 0.02562 * 12 10 9 36 36 H 1.08999 * 109.47172 * 299.99959 * 13 12 10 37 37 H 1.08998 * 109.47454 * 59.99826 * 13 12 10 38 38 H 0.96994 * 120.00249 * 180.02562 * 17 16 14 39 39 H 1.08001 * 120.02769 * 179.72249 * 22 5 4 40 40 H 1.08006 * 119.97076 * 180.25587 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5786 1.2008 0.0005 5 6 4.2735 0.0000 0.0016 6 8 5.6325 0.0001 0.0016 7 6 6.2813 -1.2731 0.0022 8 6 7.7981 -1.0726 0.0027 9 6 8.4927 -2.4358 0.0027 10 6 9.9867 -2.2383 0.0026 11 8 10.4502 -1.1176 0.0021 12 7 10.8077 -3.3072 0.0021 13 6 12.2601 -3.1152 0.0025 14 6 12.9443 -4.4579 0.0011 15 1 12.3561 -5.3637 0.0004 16 6 14.3212 -4.5300 0.0018 17 7 15.0374 -3.4270 0.0032 18 14 15.1692 -6.1944 0.0008 19 1 14.7709 -6.9523 -1.2127 20 1 16.6414 -5.9998 0.0011 21 1 14.7697 -6.9543 1.2124 22 6 3.5787 -1.2007 -0.0033 23 6 2.1973 -1.1980 0.0014 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5137 27 1 1.6558 2.1327 -0.0009 28 1 4.1172 2.1370 0.0001 29 1 5.9884 -1.8297 0.8924 30 1 5.9884 -1.8305 -0.8875 31 1 8.0913 -0.5158 -0.8873 32 1 8.0905 -0.5154 0.8926 33 1 8.1995 -2.9930 0.8925 34 1 8.2001 -2.9926 -0.8875 35 1 10.4370 -4.2036 0.0013 36 1 12.5532 -2.5576 -0.8870 37 1 12.5528 -2.5588 0.8929 38 1 16.0060 -3.4778 0.0033 39 1 4.1174 -2.1367 -0.0070 40 1 1.6559 -2.1326 0.0018 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000243844170.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:22 Heat of formation + Delta-G solvation = -98.368492 kcal Electronic energy + Delta-G solvation = -19696.435457 eV Core-core repulsion = 16474.551537 eV Total energy + Delta-G solvation = -3221.883920 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.12666 -40.52726 -38.70550 -36.21202 -34.89082 -34.33025 -32.71457 -31.94257 -29.90814 -28.16432 -26.82911 -24.92470 -23.89238 -22.57570 -21.91189 -21.26285 -19.30803 -18.76337 -17.57191 -17.41466 -17.02320 -16.73847 -16.36328 -16.23312 -15.96420 -15.21561 -14.96083 -14.77656 -14.39964 -14.37844 -14.20025 -13.93268 -13.79725 -13.25296 -12.92938 -12.91973 -12.82502 -12.67175 -12.40142 -12.36705 -12.23640 -12.10343 -11.62936 -11.51623 -11.47342 -10.79780 -10.78979 -9.94003 -9.83198 -8.97226 -8.29448 -6.46593 0.40827 0.47729 1.43036 1.47266 1.55517 1.77933 2.09413 2.35828 2.72644 2.81450 3.05245 3.74823 3.89594 3.92282 3.97147 4.05825 4.12034 4.28270 4.39420 4.45678 4.47087 4.48945 4.66105 4.72861 4.86403 4.90720 5.05071 5.11877 5.12766 5.18079 5.23247 5.25440 5.40293 5.43560 5.48736 5.69791 5.71213 5.84425 5.91840 6.50350 6.64783 6.91440 7.23142 7.51459 8.82560 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.058659 B = 0.002128 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.220234 B =13152.344937 C =13593.211938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.136 4.136 3 C -0.087 4.087 4 C -0.170 4.170 5 C 0.102 3.898 6 O -0.339 6.339 7 C 0.066 3.934 8 C -0.099 4.099 9 C -0.119 4.119 10 C 0.491 3.509 11 O -0.609 6.609 12 N -0.708 5.708 13 C 0.264 3.736 14 C -0.557 4.557 15 H 0.086 0.914 16 C 0.002 3.998 17 N -0.932 5.932 18 Si 0.987 3.013 19 H -0.261 1.261 20 H -0.287 1.287 21 H -0.261 1.261 22 C -0.212 4.212 23 C -0.087 4.087 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.147 0.853 28 H 0.128 0.872 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.411 0.589 36 H -0.015 1.015 37 H -0.014 1.014 38 H 0.269 0.731 39 H 0.145 0.855 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.361 0.633 -0.011 30.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.136 4.136 3 C -0.105 4.105 4 C -0.189 4.189 5 C 0.057 3.943 6 O -0.253 6.253 7 C -0.009 4.009 8 C -0.137 4.137 9 C -0.158 4.158 10 C 0.279 3.721 11 O -0.491 6.491 12 N -0.358 5.358 13 C 0.140 3.860 14 C -0.595 4.595 15 H 0.104 0.896 16 C -0.198 4.198 17 N -0.570 5.570 18 Si 0.810 3.190 19 H -0.186 1.186 20 H -0.212 1.212 21 H -0.186 1.186 22 C -0.230 4.230 23 C -0.105 4.105 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.165 0.835 28 H 0.146 0.854 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.247 0.753 36 H 0.003 0.997 37 H 0.004 0.996 38 H 0.077 0.923 39 H 0.162 0.838 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -29.704 1.629 -0.010 29.748 hybrid contribution 1.163 -0.645 -0.008 1.330 sum -28.541 0.984 -0.018 28.558 Atomic orbital electron populations 1.20759 0.89194 1.03552 1.02876 1.20226 0.97719 0.92870 1.02766 1.21129 0.92412 0.99065 0.97848 1.20682 0.94752 0.96439 1.07006 1.19325 0.82201 0.95222 0.97517 1.86041 1.16991 1.33503 1.88808 1.22869 0.91309 0.83445 1.03268 1.21120 0.92368 0.97003 1.03248 1.21499 0.87778 0.98970 1.07578 1.21590 0.91091 0.84089 0.75359 1.90652 1.79489 1.26162 1.52813 1.46209 1.07396 1.09420 1.72741 1.18540 0.76790 0.96666 0.93960 1.21612 0.92459 0.92474 1.52967 0.89580 1.26108 0.98209 1.01629 0.93850 1.70136 1.06821 1.30163 1.49920 0.85181 0.76612 0.77713 0.79539 1.18582 1.21220 1.18573 1.21521 0.96039 0.97218 1.08271 1.21178 0.93085 0.98842 0.97405 0.90689 0.90753 0.90859 0.83522 0.85410 0.89876 0.89866 0.92296 0.92286 0.85459 0.85464 0.75313 0.99655 0.99650 0.92272 0.83775 0.83622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.01 71.24 0.71 -0.22 16 2 C -0.14 -1.98 5.88 -19.85 -0.12 -2.10 16 3 C -0.09 -1.40 9.69 22.25 0.22 -1.18 16 4 C -0.17 -3.51 9.99 22.36 0.22 -3.29 16 5 C 0.10 2.29 6.69 22.50 0.15 2.44 16 6 O -0.34 -8.54 10.14 -92.48 -0.94 -9.48 16 7 C 0.07 1.27 4.74 71.98 0.34 1.61 16 8 C -0.10 -2.53 4.87 30.59 0.15 -2.38 16 9 C -0.12 -2.77 5.70 29.85 0.17 -2.60 16 10 C 0.49 19.13 7.83 87.66 0.69 19.81 16 11 O -0.61 -30.55 15.98 -3.01 -0.05 -30.60 16 12 N -0.71 -29.29 5.55 -466.79 -2.59 -31.88 16 13 C 0.26 14.56 5.43 85.63 0.46 15.02 16 14 C -0.56 -30.25 9.28 25.60 0.24 -30.01 16 15 H 0.09 4.16 7.60 -2.91 -0.02 4.13 16 16 C 0.00 0.09 5.46 84.65 0.46 0.55 16 17 N -0.93 -56.60 13.29 21.45 0.28 -56.31 16 18 Si 0.99 42.13 29.54 68.60 2.03 44.15 16 19 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 20 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 21 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 22 C -0.21 -3.76 9.04 22.36 0.20 -3.56 16 23 C -0.09 -1.30 9.69 22.25 0.22 -1.09 16 24 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.07 0.51 8.08 -2.39 -0.02 0.49 16 26 H 0.07 0.52 8.08 -2.39 -0.02 0.50 16 27 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 28 H 0.13 2.53 8.06 -2.91 -0.02 2.50 16 29 H 0.08 1.27 7.67 -2.39 -0.02 1.25 16 30 H 0.08 1.27 7.65 -2.39 -0.02 1.25 16 31 H 0.06 1.75 8.10 -2.39 -0.02 1.74 16 32 H 0.06 1.76 8.10 -2.39 -0.02 1.74 16 33 H 0.13 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.13 2.15 8.14 -2.38 -0.02 2.13 16 35 H 0.41 13.52 8.32 -92.71 -0.77 12.75 16 36 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 37 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 38 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 39 H 0.14 1.96 6.30 -2.91 -0.02 1.94 16 40 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 Total: -1.00 -76.62 343.21 3.11 -73.51 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 0.26 Total: 17.60 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: 4.11 Total: -6.99 kcal Atomic # 7 Polarization: -85.89 SS G_CDS: -2.30 Total: -88.19 kcal Atomic # 8 Polarization: -39.09 SS G_CDS: -0.99 Total: -40.08 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.15 kcal Total: -76.62 3.11 -73.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000243844170.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.856 kcal (2) G-P(sol) polarization free energy of solvation -76.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds