Wall clock time and date at job start Mon Mar 30 2020 01:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00255 * 2 1 4 4 H 1.48508 * 109.46984 * 239.99223 * 3 2 1 5 5 H 1.48491 * 109.47385 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47313 * 119.99820 * 3 2 1 7 7 C 1.37877 * 119.99577 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99836 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00137 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.46940 * 179.97438 * 9 7 2 11 11 C 1.53048 * 109.45457 * 175.00120 * 10 9 7 12 12 C 1.53198 * 109.30799 * 181.38859 * 11 10 9 13 13 N 1.46927 * 108.77258 * 305.35841 * 12 11 10 14 14 C 1.34775 * 120.63315 * 233.58656 * 13 12 11 15 15 O 1.21274 * 119.99884 * 0.02562 * 14 13 12 16 16 C 1.50702 * 120.00067 * 180.02562 * 14 13 12 17 17 C 1.50703 * 109.47066 * 180.02562 * 16 14 13 18 18 C 1.34507 * 125.78834 * 89.71402 * 17 16 14 19 19 C 1.41386 * 106.84010 * 180.26118 * 18 17 16 20 20 C 1.34511 * 106.84141 * 0.02562 * 19 18 17 21 21 O 1.34304 * 125.78797 * 270.02580 * 17 16 14 22 22 C 1.46929 * 118.73795 * 53.86620 * 13 12 11 23 23 C 1.53036 * 109.45880 * 295.06564 * 10 9 7 24 24 H 0.97007 * 119.99647 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47263 * 59.99657 * 9 7 2 26 26 H 1.09002 * 109.47227 * 299.99417 * 9 7 2 27 27 H 1.08994 * 109.46222 * 55.02966 * 10 9 7 28 28 H 1.08991 * 109.49788 * 61.43516 * 11 10 9 29 29 H 1.09002 * 109.52020 * 301.34804 * 11 10 9 30 30 H 1.08996 * 109.58347 * 185.57755 * 12 11 10 31 31 H 1.08997 * 109.70631 * 65.21546 * 12 11 10 32 32 H 1.09000 * 109.47323 * 60.00369 * 16 14 13 33 33 H 1.09004 * 109.47219 * 300.00354 * 16 14 13 34 34 H 1.08004 * 126.58507 * 0.26980 * 18 17 16 35 35 H 1.08000 * 126.57862 * 179.97438 * 19 18 17 36 36 H 1.08000 * 125.79502 * 180.02562 * 20 19 18 37 37 H 1.09002 * 109.58614 * 65.92451 * 22 13 12 38 38 H 1.09002 * 109.59093 * 186.35226 * 22 13 12 39 39 H 1.09001 * 109.50034 * 298.56934 * 23 10 9 40 40 H 1.08998 * 109.49873 * 58.63612 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4836 -4.9838 0.1263 12 6 2.4841 -6.1435 0.1609 13 7 3.3501 -6.0563 -1.0229 14 6 3.4919 -7.1115 -1.8492 15 8 2.9014 -8.1455 -1.6192 16 6 4.3843 -7.0066 -3.0590 17 6 4.3682 -8.3131 -3.8100 18 6 3.5107 -8.6456 -4.7915 19 6 3.8497 -9.9543 -5.2056 20 6 4.8937 -10.3433 -4.4520 21 8 5.2037 -9.3451 -3.6087 22 6 4.0634 -4.7989 -1.2852 23 6 3.0411 -3.6524 -1.3065 24 1 -0.4850 0.8401 -0.0004 25 1 0.6245 -2.5571 -0.8896 26 1 0.6239 -2.5567 0.8903 27 1 2.9288 -3.5554 0.8427 28 1 0.8180 -5.1028 -0.7285 29 1 0.8983 -4.9808 1.0458 30 1 1.9455 -7.0910 0.1505 31 1 3.0914 -6.0781 1.0636 32 1 5.4026 -6.7825 -2.7411 33 1 4.0230 -6.2097 -3.7091 34 1 2.7159 -8.0309 -5.1875 35 1 3.3632 -10.5312 -5.9782 36 1 5.3979 -11.2964 -4.5149 37 1 4.7967 -4.6237 -0.4980 38 1 4.5673 -4.8590 -2.2499 39 1 2.3606 -3.7840 -2.1479 40 1 3.5640 -2.7014 -1.4069 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259770888.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:27 Heat of formation + Delta-G solvation = -36.841444 kcal Electronic energy + Delta-G solvation = -21242.898192 eV Core-core repulsion = 18023.682286 eV Total energy + Delta-G solvation = -3219.215907 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.63120 -39.99663 -37.37448 -34.06568 -33.27950 -32.53812 -31.91680 -30.64873 -28.25279 -27.06903 -24.54414 -22.91965 -22.02370 -21.82134 -20.76842 -19.78747 -18.72435 -17.45079 -17.17869 -16.32326 -15.93363 -15.52296 -15.44095 -14.58609 -14.52096 -13.77339 -13.69876 -13.44138 -13.10748 -12.92483 -12.89234 -12.75359 -12.62833 -12.20782 -11.95098 -11.73388 -11.21886 -11.03165 -10.84234 -10.71990 -10.49781 -10.17161 -9.97975 -9.85178 -9.65204 -9.30623 -9.01368 -8.53130 -8.40845 -8.37271 -6.02770 -4.05213 1.62417 2.52316 2.64004 2.84742 3.22469 3.29604 3.35291 3.36374 4.42311 4.44026 4.57975 4.86143 4.94534 5.05048 5.10711 5.22758 5.31573 5.36366 5.44170 5.49035 5.63142 5.68987 5.74235 5.84286 5.95249 6.00502 6.03765 6.33074 6.34624 6.42026 6.48522 6.63725 6.91870 6.95107 7.05104 7.06895 7.49700 7.63468 7.77996 7.96671 8.21134 8.38596 9.01188 9.58754 11.08423 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034489 B = 0.003302 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.664752 B = 8477.945856 C = 8769.050235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.028 3.972 10 C -0.081 4.081 11 C -0.129 4.129 12 C 0.113 3.887 13 N -0.604 5.604 14 C 0.514 3.486 15 O -0.540 6.540 16 C -0.062 4.062 17 C 0.009 3.991 18 C -0.198 4.198 19 C -0.213 4.213 20 C -0.043 4.043 21 O -0.173 6.173 22 C 0.100 3.900 23 C -0.119 4.119 24 H 0.261 0.739 25 H 0.015 0.985 26 H 0.016 0.984 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.111 0.889 33 H 0.125 0.875 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.201 0.799 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.134 -15.384 -7.519 19.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.009 4.009 10 C -0.100 4.100 11 C -0.167 4.167 12 C -0.009 4.009 13 N -0.338 5.338 14 C 0.302 3.698 15 O -0.418 6.418 16 C -0.102 4.102 17 C -0.041 4.041 18 C -0.217 4.217 19 C -0.232 4.232 20 C -0.110 4.110 21 O -0.069 6.069 22 C -0.022 4.022 23 C -0.157 4.157 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.083 0.917 32 H 0.129 0.871 33 H 0.143 0.857 34 H 0.165 0.835 35 H 0.165 0.835 36 H 0.218 0.782 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.888 -15.805 -7.170 19.974 hybrid contribution 0.220 1.016 -0.180 1.055 sum 10.108 -14.789 -7.350 19.362 Atomic orbital electron populations 1.69955 1.06072 1.26687 1.50728 1.25025 0.94802 0.99196 0.95430 0.86702 0.79609 0.83376 0.78562 1.20264 1.21372 1.20296 1.21197 0.92877 0.90961 1.50598 0.92633 1.19119 0.93598 0.90982 0.97220 1.21196 0.98012 0.94668 0.96092 1.22029 0.97613 0.94777 1.02312 1.21680 0.92566 1.00360 0.86334 1.48156 1.46599 1.12832 1.26179 1.20293 0.82286 0.83417 0.83835 1.90705 1.48003 1.29129 1.73947 1.20162 1.02323 0.92155 0.95518 1.21557 0.93606 0.89898 0.99055 1.21541 1.02097 0.97486 1.00567 1.21796 1.00214 0.97020 1.04168 1.23958 1.00417 0.93179 0.93473 1.83979 1.49633 1.22177 1.51156 1.22099 0.95224 0.83703 1.01188 1.21988 0.97491 0.97097 0.99162 0.92959 0.96644 0.96591 0.92302 0.92052 0.91089 0.89695 0.91747 0.87130 0.85731 0.83548 0.83538 0.78231 0.91203 0.90419 0.92160 0.89593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.28 13.29 55.43 0.74 -25.55 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -13.73 8.39 -34.44 -0.29 -14.02 16 8 H 0.06 1.40 7.06 -52.49 -0.37 1.03 16 9 C 0.03 0.67 4.45 -27.88 -0.12 0.55 16 10 C -0.08 -1.51 2.10 -90.57 -0.19 -1.70 16 11 C -0.13 -2.13 5.36 -26.60 -0.14 -2.27 16 12 C 0.11 1.66 6.43 -3.71 -0.02 1.64 16 13 N -0.60 -8.48 2.97 -172.49 -0.51 -8.99 16 14 C 0.51 7.51 7.69 -10.99 -0.08 7.42 16 15 O -0.54 -9.95 15.45 5.56 0.09 -9.86 16 16 C -0.06 -0.68 4.58 -29.03 -0.13 -0.81 16 17 C 0.01 0.12 5.81 -35.63 -0.21 -0.09 16 18 C -0.20 -2.43 10.81 -39.70 -0.43 -2.85 16 19 C -0.21 -2.30 10.91 -39.70 -0.43 -2.74 16 20 C -0.04 -0.44 12.09 29.41 0.36 -0.09 16 21 O -0.17 -2.26 10.65 5.70 0.06 -2.19 16 22 C 0.10 1.24 6.37 -3.48 -0.02 1.22 16 23 C -0.12 -1.92 5.21 -26.39 -0.14 -2.06 16 24 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 25 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.08 1.31 7.00 -51.93 -0.36 0.95 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.11 0.96 7.93 -51.93 -0.41 0.55 16 33 H 0.12 1.08 7.70 -51.93 -0.40 0.68 16 34 H 0.15 1.60 8.06 -52.48 -0.42 1.17 16 35 H 0.15 1.22 8.06 -52.49 -0.42 0.79 16 36 H 0.20 1.23 8.06 -52.49 -0.42 0.81 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 0.73 5.93 -51.93 -0.31 0.43 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.09 1.47 6.91 -51.93 -0.36 1.11 16 LS Contribution 329.02 15.07 4.96 4.96 Total: -1.00 -32.86 329.02 -7.65 -40.51 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -6.00 Total: -0.44 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -1.96 Total: -14.33 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: 0.22 Total: -34.54 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.15 Total: -12.06 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.86 -7.65 -40.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259770888.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.666 kcal (2) G-P(sol) polarization free energy of solvation -32.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds