Wall clock time and date at job start Mon Mar 30 2020 01:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00255 * 2 1 4 4 H 1.48508 * 109.46984 * 239.99223 * 3 2 1 5 5 H 1.48491 * 109.47385 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47313 * 119.99820 * 3 2 1 7 7 C 1.37877 * 119.99577 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99836 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00137 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.46940 * 179.97438 * 9 7 2 11 11 C 1.53048 * 109.45457 * 175.00120 * 10 9 7 12 12 C 1.53198 * 109.30799 * 181.38859 * 11 10 9 13 13 N 1.46927 * 108.77258 * 305.35841 * 12 11 10 14 14 C 1.34775 * 120.63315 * 233.58656 * 13 12 11 15 15 O 1.21274 * 119.99884 * 0.02562 * 14 13 12 16 16 C 1.50702 * 120.00067 * 180.02562 * 14 13 12 17 17 C 1.50703 * 109.47066 * 180.02562 * 16 14 13 18 18 C 1.34507 * 125.78834 * 89.71402 * 17 16 14 19 19 C 1.41386 * 106.84010 * 180.26118 * 18 17 16 20 20 C 1.34511 * 106.84141 * 0.02562 * 19 18 17 21 21 O 1.34304 * 125.78797 * 270.02580 * 17 16 14 22 22 C 1.46929 * 118.73795 * 53.86620 * 13 12 11 23 23 C 1.53036 * 109.45880 * 295.06564 * 10 9 7 24 24 H 0.97007 * 119.99647 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47263 * 59.99657 * 9 7 2 26 26 H 1.09002 * 109.47227 * 299.99417 * 9 7 2 27 27 H 1.08994 * 109.46222 * 55.02966 * 10 9 7 28 28 H 1.08991 * 109.49788 * 61.43516 * 11 10 9 29 29 H 1.09002 * 109.52020 * 301.34804 * 11 10 9 30 30 H 1.08996 * 109.58347 * 185.57755 * 12 11 10 31 31 H 1.08997 * 109.70631 * 65.21546 * 12 11 10 32 32 H 1.09000 * 109.47323 * 60.00369 * 16 14 13 33 33 H 1.09004 * 109.47219 * 300.00354 * 16 14 13 34 34 H 1.08004 * 126.58507 * 0.26980 * 18 17 16 35 35 H 1.08000 * 126.57862 * 179.97438 * 19 18 17 36 36 H 1.08000 * 125.79502 * 180.02562 * 20 19 18 37 37 H 1.09002 * 109.58614 * 65.92451 * 22 13 12 38 38 H 1.09002 * 109.59093 * 186.35226 * 22 13 12 39 39 H 1.09001 * 109.50034 * 298.56934 * 23 10 9 40 40 H 1.08998 * 109.49873 * 58.63612 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4836 -4.9838 0.1263 12 6 2.4841 -6.1435 0.1609 13 7 3.3501 -6.0563 -1.0229 14 6 3.4919 -7.1115 -1.8492 15 8 2.9014 -8.1455 -1.6192 16 6 4.3843 -7.0066 -3.0590 17 6 4.3682 -8.3131 -3.8100 18 6 3.5107 -8.6456 -4.7915 19 6 3.8497 -9.9543 -5.2056 20 6 4.8937 -10.3433 -4.4520 21 8 5.2037 -9.3451 -3.6087 22 6 4.0634 -4.7989 -1.2852 23 6 3.0411 -3.6524 -1.3065 24 1 -0.4850 0.8401 -0.0004 25 1 0.6245 -2.5571 -0.8896 26 1 0.6239 -2.5567 0.8903 27 1 2.9288 -3.5554 0.8427 28 1 0.8180 -5.1028 -0.7285 29 1 0.8983 -4.9808 1.0458 30 1 1.9455 -7.0910 0.1505 31 1 3.0914 -6.0781 1.0636 32 1 5.4026 -6.7825 -2.7411 33 1 4.0230 -6.2097 -3.7091 34 1 2.7159 -8.0309 -5.1875 35 1 3.3632 -10.5312 -5.9782 36 1 5.3979 -11.2964 -4.5149 37 1 4.7967 -4.6237 -0.4980 38 1 4.5673 -4.8590 -2.2499 39 1 2.3606 -3.7840 -2.1479 40 1 3.5640 -2.7014 -1.4069 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259770888.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:26 Heat of formation + Delta-G solvation = -56.318447 kcal Electronic energy + Delta-G solvation = -21243.742778 eV Core-core repulsion = 18023.682286 eV Total energy + Delta-G solvation = -3220.060493 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.47063 -41.15790 -38.71039 -35.69196 -34.28704 -33.94329 -33.13623 -31.81502 -29.86461 -28.12326 -26.17020 -24.14842 -23.55910 -22.66760 -21.84168 -21.04530 -19.92744 -18.44147 -18.32139 -18.18044 -16.95836 -16.56275 -16.53537 -16.43825 -15.48757 -15.16149 -14.99686 -14.62624 -14.38389 -14.34496 -13.97256 -13.73286 -13.58890 -13.54724 -13.36160 -12.94561 -12.74298 -12.64957 -12.46707 -12.31418 -12.10223 -11.75581 -11.34593 -11.14308 -10.89197 -10.83749 -10.78413 -10.49498 -9.61707 -9.37126 -8.14340 -6.24062 0.77007 1.43870 1.46014 1.53432 1.55891 1.67792 1.99578 2.24775 2.44790 3.19609 3.52584 3.70512 3.96854 4.05432 4.13200 4.16035 4.16800 4.23152 4.37004 4.41269 4.45911 4.58897 4.70500 4.83627 4.90681 4.94160 4.98031 5.02584 5.12102 5.22749 5.33185 5.35530 5.43420 5.56476 5.61435 5.62646 5.84447 5.91846 6.21485 6.30510 6.41389 6.93247 7.11020 7.44988 8.97537 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034489 B = 0.003302 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.664752 B = 8477.945856 C = 8769.050235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.005 4.005 3 Si 0.960 3.040 4 H -0.263 1.263 5 H -0.291 1.291 6 H -0.267 1.267 7 C -0.526 4.526 8 H 0.070 0.930 9 C 0.032 3.968 10 C -0.074 4.074 11 C -0.121 4.121 12 C 0.119 3.881 13 N -0.605 5.605 14 C 0.512 3.488 15 O -0.585 6.585 16 C -0.056 4.056 17 C -0.014 4.014 18 C -0.215 4.215 19 C -0.230 4.230 20 C -0.042 4.042 21 O -0.191 6.191 22 C 0.108 3.892 23 C -0.116 4.116 24 H 0.260 0.740 25 H -0.016 1.016 26 H -0.017 1.017 27 H 0.064 0.936 28 H 0.045 0.955 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.140 0.860 33 H 0.150 0.850 34 H 0.152 0.848 35 H 0.167 0.833 36 H 0.238 0.762 37 H 0.088 0.912 38 H 0.117 0.883 39 H 0.048 0.952 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.969 -15.628 -8.267 21.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.202 4.202 3 Si 0.785 3.215 4 H -0.187 1.187 5 H -0.217 1.217 6 H -0.192 1.192 7 C -0.564 4.564 8 H 0.088 0.912 9 C -0.005 4.005 10 C -0.093 4.093 11 C -0.160 4.160 12 C -0.004 4.004 13 N -0.337 5.337 14 C 0.301 3.699 15 O -0.466 6.466 16 C -0.095 4.095 17 C -0.064 4.064 18 C -0.235 4.235 19 C -0.249 4.249 20 C -0.109 4.109 21 O -0.088 6.088 22 C -0.014 4.014 23 C -0.154 4.154 24 H 0.069 0.931 25 H 0.002 0.998 26 H 0.001 0.999 27 H 0.082 0.918 28 H 0.064 0.936 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.158 0.842 33 H 0.167 0.833 34 H 0.170 0.830 35 H 0.185 0.815 36 H 0.254 0.746 37 H 0.107 0.893 38 H 0.135 0.865 39 H 0.067 0.933 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 12.752 -16.041 -7.924 21.971 hybrid contribution -0.741 1.039 0.048 1.278 sum 12.011 -15.001 -7.876 20.768 Atomic orbital electron populations 1.70115 1.07998 1.27540 1.52369 1.25986 0.95606 1.03365 0.95214 0.85566 0.78226 0.78351 0.79309 1.18740 1.21739 1.19220 1.21659 0.93724 0.91702 1.49305 0.91183 1.19022 0.94082 0.93288 0.94107 1.21048 0.97040 0.93137 0.98030 1.21903 0.97769 0.94706 1.01572 1.21537 0.92497 0.98642 0.87689 1.48241 1.46320 1.13437 1.25740 1.20940 0.81975 0.82611 0.84344 1.90684 1.49933 1.30879 1.75070 1.20265 1.03029 0.92216 0.94010 1.21898 0.94110 0.90690 0.99715 1.21868 1.02246 0.98435 1.00902 1.22161 1.00767 0.96871 1.05065 1.24764 1.00175 0.93715 0.92232 1.83969 1.50079 1.22800 1.51942 1.22178 0.93973 0.81039 1.04173 1.21886 0.97880 0.98692 0.96909 0.93112 0.99759 0.99879 0.91808 0.93621 0.91317 0.90595 0.89993 0.84222 0.83281 0.83047 0.81526 0.74605 0.89336 0.86509 0.93301 0.90278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.66 13.29 21.45 0.28 -56.37 16 2 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 3 Si 0.96 42.69 29.54 68.60 2.03 44.72 16 4 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 5 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 7 C -0.53 -28.01 8.39 25.60 0.21 -27.79 16 8 H 0.07 3.45 7.06 -2.91 -0.02 3.43 16 9 C 0.03 1.61 4.45 29.85 0.13 1.75 16 10 C -0.07 -2.74 2.10 -10.76 -0.02 -2.76 16 11 C -0.12 -4.03 5.36 30.68 0.16 -3.87 16 12 C 0.12 3.38 6.43 86.36 0.56 3.93 16 13 N -0.61 -15.66 2.97 -818.04 -2.43 -18.09 16 14 C 0.51 14.02 7.69 87.66 0.67 14.69 16 15 O -0.59 -21.26 15.45 -3.01 -0.05 -21.30 16 16 C -0.06 -1.07 4.58 29.10 0.13 -0.94 16 17 C -0.01 -0.33 5.81 24.83 0.14 -0.19 16 18 C -0.22 -5.04 10.81 22.19 0.24 -4.80 16 19 C -0.23 -4.62 10.91 22.19 0.24 -4.38 16 20 C -0.04 -0.79 12.09 66.97 0.81 0.02 16 21 O -0.19 -4.65 10.65 -2.51 -0.03 -4.68 16 22 C 0.11 2.30 6.37 86.51 0.55 2.85 16 23 C -0.12 -3.55 5.21 30.82 0.16 -3.39 16 24 H 0.26 14.90 8.31 -92.70 -0.77 14.13 16 25 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 26 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 27 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.08 2.33 7.00 -2.39 -0.02 2.32 16 31 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.14 1.83 7.93 -2.39 -0.02 1.82 16 33 H 0.15 2.07 7.70 -2.39 -0.02 2.05 16 34 H 0.15 3.20 8.06 -2.91 -0.02 3.17 16 35 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 36 H 0.24 2.22 8.06 -2.91 -0.02 2.20 16 37 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.12 1.63 5.93 -2.39 -0.01 1.62 16 39 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.08 2.55 6.91 -2.39 -0.02 2.54 16 Total: -1.00 -73.72 329.02 5.29 -68.43 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 1.02 Total: 11.98 kcal Atomic # 6 Polarization: -29.14 SS G_CDS: 4.46 Total: -24.68 kcal Atomic # 7 Polarization: -72.32 SS G_CDS: -2.14 Total: -74.46 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -0.07 Total: -25.98 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -73.72 5.29 -68.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259770888.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.110 kcal (2) G-P(sol) polarization free energy of solvation -73.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds