Wall clock time and date at job start Mon Mar 30 2020 02:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38283 * 119.94685 * 2 1 4 4 C 1.38129 * 120.05679 * 179.97438 * 3 2 1 5 5 C 1.38751 * 119.94151 * 0.02562 * 4 3 2 6 6 O 1.35900 * 120.05239 * 180.02562 * 5 4 3 7 7 C 1.42894 * 117.00093 * 0.02562 * 6 5 4 8 8 C 1.52998 * 109.46994 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.47357 * 180.02562 * 8 7 6 10 10 O 1.21297 * 119.99622 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00356 * 180.02562 * 9 8 7 12 12 C 1.46494 * 120.00047 * 359.97438 * 11 9 8 13 13 C 1.37097 * 120.00071 * 180.02562 * 11 9 8 14 14 H 1.07999 * 119.99848 * 24.38911 * 13 11 9 15 15 C 1.38948 * 119.99974 * 204.39205 * 13 11 9 16 16 N 1.31415 * 120.00045 * 12.64277 * 15 13 11 17 17 Si 1.86804 * 120.00102 * 192.63733 * 15 13 11 18 18 H 1.48503 * 109.46561 * 60.00277 * 17 15 13 19 19 H 1.48493 * 109.46984 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47178 * 300.00446 * 17 15 13 21 21 C 1.38717 * 119.88903 * 0.27724 * 5 4 3 22 22 C 1.50697 * 120.02734 * 179.72284 * 21 5 4 23 23 C 1.38162 * 119.94403 * 359.45019 * 21 5 4 24 24 H 1.09005 * 109.47275 * 89.99337 * 1 2 3 25 25 H 1.08993 * 109.47349 * 209.99992 * 1 2 3 26 26 H 1.09004 * 109.46823 * 329.99884 * 1 2 3 27 27 H 1.07999 * 119.97526 * 0.02562 * 3 2 1 28 28 H 1.07991 * 120.02719 * 180.02562 * 4 3 2 29 29 H 1.09001 * 109.47344 * 299.99863 * 7 6 5 30 30 H 1.09004 * 109.47333 * 60.00059 * 7 6 5 31 31 H 1.09005 * 109.47417 * 299.99638 * 8 7 6 32 32 H 1.09000 * 109.47494 * 60.00176 * 8 7 6 33 33 H 1.08995 * 109.47194 * 85.86362 * 12 11 9 34 34 H 1.08996 * 109.47267 * 205.86284 * 12 11 9 35 35 H 1.09003 * 109.47022 * 325.86517 * 12 11 9 36 36 H 0.97000 * 120.00095 * 179.97438 * 16 15 13 37 37 H 1.09000 * 109.47184 * 89.99658 * 22 21 5 38 38 H 1.09000 * 109.47323 * 210.00056 * 22 21 5 39 39 H 1.09001 * 109.47107 * 330.00163 * 22 21 5 40 40 H 1.07997 * 119.97238 * 180.27301 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1982 0.0000 4 6 3.5786 1.2009 0.0005 5 6 4.2734 -0.0001 0.0005 6 8 5.6324 -0.0002 0.0016 7 6 6.2812 1.2730 0.0032 8 6 7.7980 1.0725 0.0036 9 6 8.4823 2.4152 0.0059 10 8 7.8217 3.4325 0.0068 11 7 9.8282 2.4857 0.0061 12 6 10.6260 1.2570 0.0046 13 6 10.4507 3.7072 0.0088 14 1 9.9368 4.5742 0.3969 15 6 11.7425 3.8297 -0.4879 16 7 12.2757 2.8489 -1.1812 17 14 12.7214 5.3887 -0.1702 18 1 12.8797 5.5840 1.2934 19 1 14.0601 5.2699 -0.8019 20 1 12.0024 6.5514 -0.7500 21 6 3.5786 -1.2007 -0.0058 22 6 4.3301 -2.5069 -0.0122 23 6 2.1970 -1.1980 -0.0006 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6560 2.1328 0.0004 28 1 4.1172 2.1369 0.0010 29 1 5.9891 1.8309 -0.8865 30 1 5.9877 1.8293 0.8935 31 1 8.0906 0.5145 0.8931 32 1 8.0912 0.5165 -0.8869 33 1 10.7618 0.9133 -1.0208 34 1 11.5994 1.4553 0.4531 35 1 10.1104 0.4883 0.5802 36 1 13.1775 2.9345 -1.5282 37 1 4.5110 -2.8270 1.0140 38 1 3.7401 -3.2631 -0.5301 39 1 5.2830 -2.3754 -0.5249 40 1 1.6556 -2.1325 -0.0011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260111553.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:02 Heat of formation + Delta-G solvation = -56.826459 kcal Electronic energy + Delta-G solvation = -20804.457641 eV Core-core repulsion = 17584.375119 eV Total energy + Delta-G solvation = -3220.082522 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.21142 -38.59855 -37.52636 -34.77380 -33.33894 -31.92516 -31.57976 -30.75425 -27.27444 -26.52084 -26.04530 -24.97437 -23.49542 -21.46385 -20.66176 -18.78671 -17.94232 -16.88929 -16.20203 -16.02405 -15.71778 -14.90611 -14.67389 -14.40856 -14.21713 -13.97437 -13.77090 -13.35691 -13.19991 -13.17995 -12.56512 -12.47337 -12.35396 -11.97362 -11.67104 -11.50403 -11.38667 -11.32776 -11.22319 -11.16477 -10.86731 -10.59425 -10.42686 -10.38199 -10.22947 -9.03681 -8.81028 -8.49433 -7.90473 -7.70852 -6.35965 -3.92800 1.33137 1.44075 3.16810 3.22218 3.23999 3.32971 3.72114 3.83299 4.13814 4.73621 4.78322 4.88216 4.98290 5.07920 5.15542 5.23588 5.32963 5.39424 5.41651 5.47316 5.58176 5.66196 5.68552 5.75075 5.79419 5.88912 5.96369 6.14975 6.21422 6.23147 6.36397 6.40342 6.48007 6.58877 6.82319 6.86362 7.16801 7.53241 7.57406 8.09266 8.43552 9.13398 9.37175 9.91895 10.68936 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.039239 B = 0.003114 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.409787 B = 8988.237876 C = 9607.276413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.131 4.131 3 C -0.085 4.085 4 C -0.200 4.200 5 C 0.133 3.867 6 O -0.316 6.316 7 C 0.080 3.920 8 C -0.127 4.127 9 C 0.449 3.551 10 O -0.594 6.594 11 N -0.442 5.442 12 C 0.109 3.891 13 C -0.309 4.309 14 H 0.098 0.902 15 C 0.031 3.969 16 N -0.881 5.881 17 Si 0.928 3.072 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.272 1.272 21 C -0.120 4.120 22 C -0.104 4.104 23 C -0.086 4.086 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.122 0.878 28 H 0.133 0.867 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.028 0.972 36 H 0.269 0.731 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.591 -9.934 2.189 18.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.131 4.131 3 C -0.104 4.104 4 C -0.219 4.219 5 C 0.087 3.913 6 O -0.230 6.230 7 C 0.005 3.995 8 C -0.168 4.168 9 C 0.237 3.763 10 O -0.480 6.480 11 N -0.160 5.160 12 C -0.034 4.034 13 C -0.437 4.437 14 H 0.116 0.884 15 C -0.172 4.172 16 N -0.520 5.520 17 Si 0.754 3.246 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.197 1.197 21 C -0.121 4.121 22 C -0.160 4.160 23 C -0.104 4.104 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.140 0.860 28 H 0.151 0.849 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.046 0.954 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -15.529 -9.637 2.091 18.395 hybrid contribution 0.713 0.905 0.002 1.152 sum -14.816 -8.732 2.094 17.325 Atomic orbital electron populations 1.20683 0.91340 1.02355 1.01906 1.19757 0.95962 0.93059 1.04362 1.20804 0.93329 0.97549 0.98670 1.21399 0.95359 0.97655 1.07484 1.18846 0.82749 0.93487 0.96169 1.85975 1.15826 1.33136 1.88066 1.22504 0.92143 0.82264 1.02606 1.21389 0.92662 0.98518 1.04208 1.19727 0.83089 0.89339 0.84147 1.90522 1.64224 1.36910 1.56316 1.43535 1.03422 1.06799 1.62265 1.21519 0.96108 0.85044 1.00773 1.19607 0.97403 0.87398 1.39278 0.88432 1.25367 0.97966 0.98852 0.95043 1.69986 1.16261 1.32789 1.32966 0.85975 0.78383 0.81477 0.78728 1.19868 1.20907 1.19748 1.19252 0.93239 0.93576 1.05995 1.20589 1.00217 0.93052 1.02167 1.20684 0.92360 0.97577 0.99821 0.91656 0.91917 0.91872 0.86031 0.84885 0.91321 0.91378 0.89512 0.89275 0.92848 0.90627 0.95364 0.92113 0.91545 0.91995 0.90954 0.85785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.01 36.01 0.36 -0.50 16 2 C -0.13 -1.47 5.88 -104.60 -0.62 -2.08 16 3 C -0.09 -1.05 9.69 -39.60 -0.38 -1.43 16 4 C -0.20 -2.85 9.04 -39.43 -0.36 -3.21 16 5 C 0.13 2.00 6.66 -39.21 -0.26 1.74 16 6 O -0.32 -5.11 9.18 -19.43 -0.18 -5.29 16 7 C 0.08 1.38 4.03 37.16 0.15 1.53 16 8 C -0.13 -2.36 4.68 -27.88 -0.13 -2.49 16 9 C 0.45 10.87 7.63 -10.98 -0.08 10.78 16 10 O -0.59 -16.22 15.70 5.54 0.09 -16.13 16 11 N -0.44 -11.33 3.01 -122.20 -0.37 -11.70 16 12 C 0.11 2.42 8.44 59.84 0.51 2.93 16 13 C -0.31 -8.62 9.24 -14.93 -0.14 -8.76 16 14 H 0.10 2.83 7.45 -52.49 -0.39 2.44 16 15 C 0.03 0.82 5.04 -17.47 -0.09 0.74 16 16 N -0.88 -23.45 10.84 55.50 0.60 -22.85 16 17 Si 0.93 20.68 29.57 -169.99 -5.03 15.65 16 18 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 19 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 20 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 21 C -0.12 -1.56 5.89 -104.47 -0.62 -2.18 16 22 C -0.10 -1.13 9.79 36.00 0.35 -0.78 16 23 C -0.09 -0.98 9.35 -39.60 -0.37 -1.35 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 26 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 27 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 28 H 0.13 1.92 6.30 -52.49 -0.33 1.59 16 29 H 0.07 1.23 7.62 -51.93 -0.40 0.83 16 30 H 0.07 1.20 7.62 -51.93 -0.40 0.80 16 31 H 0.09 1.45 7.41 -51.93 -0.38 1.07 16 32 H 0.09 1.56 8.11 -51.93 -0.42 1.14 16 33 H 0.05 1.21 7.83 -51.93 -0.41 0.80 16 34 H 0.07 1.76 6.80 -51.93 -0.35 1.41 16 35 H 0.03 0.51 6.61 -51.93 -0.34 0.17 16 36 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 39 H 0.07 0.86 7.53 -51.93 -0.39 0.47 16 40 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 333.23 15.07 5.02 5.02 Total: -1.00 -30.85 333.23 -7.44 -38.28 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -5.90 Total: 2.07 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: -1.67 Total: -5.05 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: 0.23 Total: -34.55 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.09 Total: -21.42 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.65 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.85 -7.44 -38.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260111553.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.545 kcal (2) G-P(sol) polarization free energy of solvation -30.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds