Wall clock time and date at job start Mon Mar 30 2020 02:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38283 * 119.94685 * 2 1 4 4 C 1.38129 * 120.05679 * 179.97438 * 3 2 1 5 5 C 1.38751 * 119.94151 * 0.02562 * 4 3 2 6 6 O 1.35900 * 120.05239 * 180.02562 * 5 4 3 7 7 C 1.42894 * 117.00093 * 0.02562 * 6 5 4 8 8 C 1.52998 * 109.46994 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.47357 * 180.02562 * 8 7 6 10 10 O 1.21297 * 119.99622 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00356 * 180.02562 * 9 8 7 12 12 C 1.46494 * 120.00047 * 359.97438 * 11 9 8 13 13 C 1.37097 * 120.00071 * 180.02562 * 11 9 8 14 14 H 1.07999 * 119.99848 * 24.38911 * 13 11 9 15 15 C 1.38948 * 119.99974 * 204.39205 * 13 11 9 16 16 N 1.31415 * 120.00045 * 12.64277 * 15 13 11 17 17 Si 1.86804 * 120.00102 * 192.63733 * 15 13 11 18 18 H 1.48503 * 109.46561 * 60.00277 * 17 15 13 19 19 H 1.48493 * 109.46984 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47178 * 300.00446 * 17 15 13 21 21 C 1.38717 * 119.88903 * 0.27724 * 5 4 3 22 22 C 1.50697 * 120.02734 * 179.72284 * 21 5 4 23 23 C 1.38162 * 119.94403 * 359.45019 * 21 5 4 24 24 H 1.09005 * 109.47275 * 89.99337 * 1 2 3 25 25 H 1.08993 * 109.47349 * 209.99992 * 1 2 3 26 26 H 1.09004 * 109.46823 * 329.99884 * 1 2 3 27 27 H 1.07999 * 119.97526 * 0.02562 * 3 2 1 28 28 H 1.07991 * 120.02719 * 180.02562 * 4 3 2 29 29 H 1.09001 * 109.47344 * 299.99863 * 7 6 5 30 30 H 1.09004 * 109.47333 * 60.00059 * 7 6 5 31 31 H 1.09005 * 109.47417 * 299.99638 * 8 7 6 32 32 H 1.09000 * 109.47494 * 60.00176 * 8 7 6 33 33 H 1.08995 * 109.47194 * 85.86362 * 12 11 9 34 34 H 1.08996 * 109.47267 * 205.86284 * 12 11 9 35 35 H 1.09003 * 109.47022 * 325.86517 * 12 11 9 36 36 H 0.97000 * 120.00095 * 179.97438 * 16 15 13 37 37 H 1.09000 * 109.47184 * 89.99658 * 22 21 5 38 38 H 1.09000 * 109.47323 * 210.00056 * 22 21 5 39 39 H 1.09001 * 109.47107 * 330.00163 * 22 21 5 40 40 H 1.07997 * 119.97238 * 180.27301 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1982 0.0000 4 6 3.5786 1.2009 0.0005 5 6 4.2734 -0.0001 0.0005 6 8 5.6324 -0.0002 0.0016 7 6 6.2812 1.2730 0.0032 8 6 7.7980 1.0725 0.0036 9 6 8.4823 2.4152 0.0059 10 8 7.8217 3.4325 0.0068 11 7 9.8282 2.4857 0.0061 12 6 10.6260 1.2570 0.0046 13 6 10.4507 3.7072 0.0088 14 1 9.9368 4.5742 0.3969 15 6 11.7425 3.8297 -0.4879 16 7 12.2757 2.8489 -1.1812 17 14 12.7214 5.3887 -0.1702 18 1 12.8797 5.5840 1.2934 19 1 14.0601 5.2699 -0.8019 20 1 12.0024 6.5514 -0.7500 21 6 3.5786 -1.2007 -0.0058 22 6 4.3301 -2.5069 -0.0122 23 6 2.1970 -1.1980 -0.0006 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6560 2.1328 0.0004 28 1 4.1172 2.1369 0.0010 29 1 5.9891 1.8309 -0.8865 30 1 5.9877 1.8293 0.8935 31 1 8.0906 0.5145 0.8931 32 1 8.0912 0.5165 -0.8869 33 1 10.7618 0.9133 -1.0208 34 1 11.5994 1.4553 0.4531 35 1 10.1104 0.4883 0.5802 36 1 13.1775 2.9345 -1.5282 37 1 4.5110 -2.8270 1.0140 38 1 3.7401 -3.2631 -0.5301 39 1 5.2830 -2.3754 -0.5249 40 1 1.6556 -2.1325 -0.0011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260111553.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:01 Heat of formation + Delta-G solvation = -73.904268 kcal Electronic energy + Delta-G solvation = -20805.198190 eV Core-core repulsion = 17584.375119 eV Total energy + Delta-G solvation = -3220.823071 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.31554 -40.40545 -38.68447 -36.75092 -34.32947 -33.77599 -32.76072 -32.12765 -28.33805 -28.07868 -27.21649 -26.58102 -25.03782 -22.62835 -21.61026 -20.55217 -19.20472 -18.86613 -17.75208 -17.40477 -17.05909 -16.49442 -16.03770 -15.90765 -15.79468 -15.21212 -14.82946 -14.50747 -14.23928 -14.09265 -14.06710 -13.83128 -13.40174 -13.32326 -13.20374 -13.15175 -12.81880 -12.69117 -12.60515 -12.39431 -12.24929 -12.19418 -12.13662 -11.65862 -11.59919 -11.02766 -10.47552 -9.76142 -9.71784 -8.92459 -8.37571 -6.03463 0.36646 0.45281 1.37695 1.40092 1.50702 1.93737 2.00336 2.31349 2.75406 3.05351 3.17674 3.73475 3.86456 3.90663 3.93519 4.05072 4.11327 4.29187 4.38627 4.40448 4.54269 4.68149 4.72641 4.76767 4.81381 4.81783 4.86196 4.91274 5.01720 5.03564 5.16457 5.34615 5.37280 5.41346 5.42092 5.52466 5.68386 5.91546 6.05911 6.40394 6.43931 7.11101 7.40573 7.95285 8.65513 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.039239 B = 0.003114 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.409787 B = 8988.237876 C = 9607.276413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.127 4.127 3 C -0.097 4.097 4 C -0.217 4.217 5 C 0.098 3.902 6 O -0.319 6.319 7 C 0.094 3.906 8 C -0.113 4.113 9 C 0.440 3.560 10 O -0.634 6.634 11 N -0.459 5.459 12 C 0.117 3.883 13 C -0.349 4.349 14 H 0.072 0.928 15 C -0.002 4.002 16 N -0.895 5.895 17 Si 0.991 3.009 18 H -0.266 1.266 19 H -0.269 1.269 20 H -0.277 1.277 21 C -0.127 4.127 22 C -0.102 4.102 23 C -0.087 4.087 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.138 0.862 28 H 0.119 0.881 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.112 0.888 32 H 0.104 0.896 33 H 0.045 0.955 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.275 0.725 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.058 0.942 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.720 -11.599 2.399 20.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.127 4.127 3 C -0.115 4.115 4 C -0.236 4.236 5 C 0.053 3.947 6 O -0.233 6.233 7 C 0.018 3.982 8 C -0.153 4.153 9 C 0.230 3.770 10 O -0.523 6.523 11 N -0.177 5.177 12 C -0.026 4.026 13 C -0.476 4.476 14 H 0.090 0.910 15 C -0.204 4.204 16 N -0.533 5.533 17 Si 0.814 3.186 18 H -0.191 1.191 19 H -0.193 1.193 20 H -0.202 1.202 21 C -0.127 4.127 22 C -0.159 4.159 23 C -0.105 4.105 24 H 0.095 0.905 25 H 0.098 0.902 26 H 0.089 0.911 27 H 0.156 0.844 28 H 0.137 0.863 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.130 0.870 32 H 0.123 0.877 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.077 0.923 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -16.655 -11.340 2.300 20.281 hybrid contribution 0.937 1.381 -0.085 1.671 sum -15.719 -9.959 2.215 18.740 Atomic orbital electron populations 1.20754 0.88773 1.03646 1.02982 1.20205 0.97842 0.92490 1.02170 1.21076 0.92610 0.99110 0.98662 1.21446 0.96488 0.97067 1.08621 1.19184 0.82166 0.94714 0.98670 1.85922 1.16882 1.31722 1.88816 1.22164 0.91596 0.82894 1.01537 1.21235 0.92817 0.95214 1.06015 1.20624 0.82791 0.91002 0.82616 1.90485 1.65045 1.39032 1.57741 1.43812 1.04295 1.07178 1.62393 1.21501 0.95565 0.84659 1.00841 1.19595 0.98604 0.88042 1.41407 0.90990 1.26128 0.98096 1.01972 0.94177 1.70053 1.16648 1.34029 1.32551 0.85039 0.77188 0.77433 0.78940 1.19074 1.19341 1.20241 1.19625 0.94210 0.93585 1.05323 1.20627 0.99768 0.92666 1.02807 1.21089 0.91757 0.99006 0.98600 0.90539 0.90218 0.91096 0.84428 0.86325 0.92784 0.92319 0.87015 0.87744 0.93629 0.92204 0.91186 0.91539 0.90793 0.89569 0.92280 0.82654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 10.01 71.24 0.71 -0.63 16 2 C -0.13 -2.54 5.88 -19.85 -0.12 -2.66 16 3 C -0.10 -2.30 9.69 22.25 0.22 -2.08 16 4 C -0.22 -6.36 9.04 22.37 0.20 -6.16 16 5 C 0.10 2.94 6.66 22.51 0.15 3.09 16 6 O -0.32 -10.39 9.18 -92.42 -0.85 -11.23 16 7 C 0.09 3.33 4.03 71.98 0.29 3.62 16 8 C -0.11 -4.15 4.68 29.85 0.14 -4.01 16 9 C 0.44 21.77 7.63 87.66 0.67 22.44 16 10 O -0.63 -36.16 15.70 -3.08 -0.05 -36.20 16 11 N -0.46 -23.93 3.01 -658.91 -1.98 -25.91 16 12 C 0.12 5.14 8.44 127.77 1.08 6.22 16 13 C -0.35 -20.00 9.24 84.04 0.78 -19.23 16 14 H 0.07 4.39 7.45 -2.91 -0.02 4.37 16 15 C 0.00 -0.08 5.04 84.93 0.43 0.35 16 16 N -0.89 -47.53 10.84 21.66 0.23 -47.30 16 17 Si 0.99 42.50 29.57 68.60 2.03 44.52 16 18 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 19 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 20 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 21 C -0.13 -3.12 5.89 -19.77 -0.12 -3.24 16 22 C -0.10 -2.04 9.79 71.24 0.70 -1.34 16 23 C -0.09 -1.73 9.35 22.25 0.21 -1.52 16 24 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 25 H 0.08 0.78 8.08 -2.39 -0.02 0.76 16 26 H 0.07 0.82 8.08 -2.38 -0.02 0.80 16 27 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 28 H 0.12 3.69 6.30 -2.92 -0.02 3.67 16 29 H 0.05 2.04 7.62 -2.39 -0.02 2.03 16 30 H 0.06 2.16 7.62 -2.38 -0.02 2.14 16 31 H 0.11 3.56 7.41 -2.38 -0.02 3.54 16 32 H 0.10 3.55 8.11 -2.39 -0.02 3.53 16 33 H 0.05 2.04 7.83 -2.39 -0.02 2.02 16 34 H 0.06 2.78 6.80 -2.39 -0.02 2.77 16 35 H 0.07 2.43 6.61 -2.39 -0.02 2.41 16 36 H 0.27 13.66 8.31 -92.71 -0.77 12.89 16 37 H 0.07 1.35 8.14 -2.39 -0.02 1.34 16 38 H 0.09 1.27 8.09 -2.39 -0.02 1.25 16 39 H 0.06 1.33 7.53 -2.39 -0.02 1.31 16 40 H 0.16 2.08 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -68.39 333.23 5.74 -62.65 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 1.02 Total: 18.62 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: 5.33 Total: -5.14 kcal Atomic # 7 Polarization: -71.46 SS G_CDS: -1.75 Total: -73.21 kcal Atomic # 8 Polarization: -46.54 SS G_CDS: -0.90 Total: -47.44 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Total: -68.39 5.74 -62.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260111553.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.258 kcal (2) G-P(sol) polarization free energy of solvation -68.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds