Wall clock time and date at job start Mon Mar 30 2020 02:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38282 * 119.94632 * 2 1 4 4 C 1.38121 * 120.05845 * 179.97438 * 3 2 1 5 5 C 1.38751 * 119.94246 * 0.02562 * 4 3 2 6 6 O 1.35905 * 120.05870 * 180.02562 * 5 4 3 7 7 C 1.42901 * 116.99604 * 0.02562 * 6 5 4 8 8 C 1.50704 * 109.46992 * 179.97438 * 7 6 5 9 9 O 1.21274 * 119.99890 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99647 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99752 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47293 * 180.02562 * 11 10 8 13 13 C 1.50704 * 109.47188 * 180.02562 * 12 11 10 14 14 H 1.07996 * 120.00305 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99988 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99828 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00088 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47149 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47350 * 119.99532 * 17 15 13 20 20 H 1.48504 * 109.47236 * 239.99694 * 17 15 13 21 21 C 1.38715 * 119.88999 * 0.27515 * 5 4 3 22 22 C 1.50697 * 120.02923 * 179.72445 * 21 5 4 23 23 C 1.38164 * 119.93880 * 359.40263 * 21 5 4 24 24 H 1.09003 * 109.46874 * 90.00479 * 1 2 3 25 25 H 1.08999 * 109.47586 * 210.00475 * 1 2 3 26 26 H 1.09004 * 109.47443 * 330.00381 * 1 2 3 27 27 H 1.08007 * 119.97230 * 359.97438 * 3 2 1 28 28 H 1.08002 * 120.02792 * 179.97438 * 4 3 2 29 29 H 1.08996 * 109.47352 * 299.99771 * 7 6 5 30 30 H 1.08999 * 109.47144 * 59.99795 * 7 6 5 31 31 H 0.96995 * 120.00267 * 0.02562 * 10 8 7 32 32 H 1.09006 * 109.47300 * 299.99891 * 11 10 8 33 33 H 1.08999 * 109.47172 * 60.00041 * 11 10 8 34 34 H 1.08996 * 109.47254 * 299.99977 * 12 11 10 35 35 H 1.08999 * 109.47046 * 59.99881 * 12 11 10 36 36 H 0.97005 * 120.00048 * 179.97438 * 16 15 13 37 37 H 1.09007 * 109.47246 * 89.99992 * 22 21 5 38 38 H 1.09000 * 109.47282 * 209.99769 * 22 21 5 39 39 H 1.08999 * 109.47028 * 329.99951 * 22 21 5 40 40 H 1.08003 * 119.96792 * 180.31516 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1982 0.0000 4 6 3.5785 1.2009 0.0005 5 6 4.2734 0.0000 0.0005 6 8 5.6324 -0.0001 0.0016 7 6 6.2812 1.2731 0.0032 8 6 7.7752 1.0756 0.0048 9 8 8.2387 -0.0451 0.0051 10 7 8.5962 2.1445 0.0060 11 6 10.0485 1.9525 0.0082 12 6 10.7432 3.3157 0.0098 13 6 12.2372 3.1182 0.0114 14 1 12.6500 2.1203 0.0116 15 6 13.0771 4.2116 0.0135 16 7 12.5745 5.4269 0.0137 17 14 14.9290 3.9669 0.0162 18 1 15.2363 2.5140 0.0161 19 1 15.5134 4.5969 -1.1950 20 1 15.5096 4.5951 1.2301 21 6 3.5786 -1.2007 -0.0058 22 6 4.3302 -2.5068 -0.0121 23 6 2.1970 -1.1979 0.0004 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 1.6559 2.1328 -0.0004 28 1 4.1171 2.1370 0.0001 29 1 5.9891 1.8309 -0.8865 30 1 5.9876 1.8293 0.8935 31 1 8.2255 3.0408 0.0062 32 1 10.3402 1.3955 0.8986 33 1 10.3427 1.3955 -0.8814 34 1 10.4517 3.8731 -0.8804 35 1 10.4489 3.8724 0.8995 36 1 13.1654 6.1962 0.0156 37 1 4.5111 -2.8270 1.0141 38 1 3.7402 -3.2630 -0.5299 39 1 5.2830 -2.3753 -0.5249 40 1 1.6557 -2.1325 0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260292595.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:42 Heat of formation + Delta-G solvation = -71.382018 kcal Electronic energy + Delta-G solvation = -20181.563791 eV Core-core repulsion = 16960.850093 eV Total energy + Delta-G solvation = -3220.713698 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.57393 -39.22258 -37.59974 -34.92208 -33.42346 -32.91111 -31.79444 -30.28059 -28.34500 -27.37867 -26.13887 -24.62927 -22.48973 -21.07756 -20.84539 -20.22810 -18.27413 -17.11584 -16.47599 -16.42046 -15.87308 -15.31237 -14.89544 -14.74233 -14.48414 -14.44389 -14.00615 -13.54314 -13.37248 -13.36455 -12.94675 -12.81396 -12.56059 -12.33704 -12.10021 -11.91989 -11.49590 -11.25084 -11.09374 -11.02181 -10.97542 -10.65840 -10.39501 -9.85201 -9.52621 -9.23842 -9.01540 -8.63466 -8.42286 -8.14282 -6.13189 -4.16057 1.12090 1.21701 2.67201 2.82169 3.26386 3.34168 3.39351 3.50636 3.85973 4.38891 4.53307 4.57938 4.69298 4.77080 4.97793 4.98203 5.04039 5.07252 5.24189 5.24515 5.33720 5.44231 5.47890 5.63200 5.66132 5.72921 6.08282 6.13856 6.24338 6.28289 6.29106 6.39208 6.60249 6.66780 6.78724 7.22430 7.46649 7.55839 7.84422 7.87234 8.22648 8.50549 8.90056 9.49126 10.98425 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.045549 B = 0.002517 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.577921 B =11122.578911 C =11700.798350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.126 4.126 3 C -0.086 4.086 4 C -0.204 4.204 5 C 0.125 3.875 6 O -0.285 6.285 7 C 0.040 3.960 8 C 0.508 3.492 9 O -0.527 6.527 10 N -0.718 5.718 11 C 0.123 3.877 12 C 0.012 3.988 13 C -0.522 4.522 14 H 0.060 0.940 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.897 3.103 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.110 4.110 22 C -0.108 4.108 23 C -0.084 4.084 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.123 0.877 28 H 0.130 0.870 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.399 0.601 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.023 0.977 35 H 0.023 0.977 36 H 0.262 0.738 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.940 -8.063 -0.054 25.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.126 4.126 3 C -0.104 4.104 4 C -0.222 4.222 5 C 0.079 3.921 6 O -0.197 6.197 7 C -0.039 4.039 8 C 0.291 3.709 9 O -0.403 6.403 10 N -0.370 5.370 11 C 0.001 3.999 12 C -0.025 4.025 13 C -0.560 4.560 14 H 0.079 0.921 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.725 3.275 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.110 4.110 22 C -0.164 4.164 23 C -0.103 4.103 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.141 0.859 28 H 0.147 0.853 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.232 0.768 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.094 0.906 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -23.382 -8.871 -0.054 25.008 hybrid contribution 0.787 0.899 0.009 1.195 sum -22.594 -7.972 -0.046 23.960 Atomic orbital electron populations 1.20704 0.91154 1.02537 1.02066 1.19796 0.96120 0.93013 1.03676 1.20786 0.93217 0.97656 0.98751 1.21267 0.95474 0.96984 1.08508 1.18907 0.82261 0.93838 0.97048 1.86164 1.15825 1.29452 1.88271 1.22562 0.92068 0.85669 1.03612 1.19936 0.87331 0.85727 0.77895 1.90722 1.77269 1.23678 1.48653 1.46196 1.08540 1.08159 1.74095 1.21784 0.75481 1.01535 1.01064 1.19340 0.95413 0.89847 0.97933 1.21081 0.90577 0.93047 1.51327 0.92132 1.25002 0.99265 0.95126 0.94946 1.69961 1.35183 0.97744 1.50396 0.86444 0.84977 0.78447 0.77633 1.19555 1.20911 1.20917 1.19284 0.93198 0.93659 1.04890 1.20641 1.00421 0.92867 1.02516 1.20750 0.92291 0.97799 0.99413 0.91499 0.91760 0.91764 0.85867 0.85261 0.89156 0.89147 0.76752 0.92326 0.92316 0.95852 0.95851 0.92862 0.91289 0.91829 0.90587 0.85502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.01 36.00 0.36 -0.32 16 2 C -0.13 -1.14 5.88 -104.60 -0.62 -1.76 16 3 C -0.09 -0.80 9.69 -39.61 -0.38 -1.19 16 4 C -0.20 -2.14 9.04 -39.43 -0.36 -2.50 16 5 C 0.13 1.58 6.66 -39.22 -0.26 1.32 16 6 O -0.29 -4.16 8.72 -39.35 -0.34 -4.50 16 7 C 0.04 0.49 5.22 36.01 0.19 0.68 16 8 C 0.51 8.55 7.91 -10.98 -0.09 8.47 16 9 O -0.53 -11.24 16.50 -14.35 -0.24 -11.48 16 10 N -0.72 -12.00 5.56 -60.29 -0.33 -12.33 16 11 C 0.12 2.56 5.61 -4.04 -0.02 2.54 16 12 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 13 C -0.52 -14.30 9.11 -34.44 -0.31 -14.62 16 14 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 16 N -0.89 -25.82 13.29 55.43 0.74 -25.09 16 17 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 18 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 C -0.11 -1.28 5.89 -104.47 -0.62 -1.89 16 22 C -0.11 -1.16 9.79 36.00 0.35 -0.81 16 23 C -0.08 -0.82 9.35 -39.61 -0.37 -1.19 16 24 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.35 8.08 -51.93 -0.42 -0.07 16 26 H 0.06 0.35 8.08 -51.93 -0.42 -0.07 16 27 H 0.12 0.88 8.06 -52.48 -0.42 0.45 16 28 H 0.13 1.11 6.30 -52.49 -0.33 0.78 16 29 H 0.09 0.89 7.66 -51.93 -0.40 0.50 16 30 H 0.09 0.90 7.66 -51.93 -0.40 0.50 16 31 H 0.40 5.49 8.47 -40.82 -0.35 5.14 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 39 H 0.08 0.96 7.53 -51.93 -0.39 0.56 16 40 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 LS Contribution 342.53 15.07 5.16 5.16 Total: -1.00 -32.81 342.53 -8.45 -41.26 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -6.05 Total: 0.35 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -2.36 Total: -9.58 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.40 Total: -37.42 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.58 Total: -15.98 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.81 -8.45 -41.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260292595.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.126 kcal (2) G-P(sol) polarization free energy of solvation -32.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds