Wall clock time and date at job start Mon Mar 30 2020 02:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38282 * 119.94632 * 2 1 4 4 C 1.38121 * 120.05845 * 179.97438 * 3 2 1 5 5 C 1.38751 * 119.94246 * 0.02562 * 4 3 2 6 6 O 1.35905 * 120.05870 * 180.02562 * 5 4 3 7 7 C 1.42901 * 116.99604 * 0.02562 * 6 5 4 8 8 C 1.50704 * 109.46992 * 179.97438 * 7 6 5 9 9 O 1.21274 * 119.99890 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99647 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99752 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47293 * 180.02562 * 11 10 8 13 13 C 1.50704 * 109.47188 * 180.02562 * 12 11 10 14 14 H 1.07996 * 120.00305 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99988 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99828 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00088 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47149 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47350 * 119.99532 * 17 15 13 20 20 H 1.48504 * 109.47236 * 239.99694 * 17 15 13 21 21 C 1.38715 * 119.88999 * 0.27515 * 5 4 3 22 22 C 1.50697 * 120.02923 * 179.72445 * 21 5 4 23 23 C 1.38164 * 119.93880 * 359.40263 * 21 5 4 24 24 H 1.09003 * 109.46874 * 90.00479 * 1 2 3 25 25 H 1.08999 * 109.47586 * 210.00475 * 1 2 3 26 26 H 1.09004 * 109.47443 * 330.00381 * 1 2 3 27 27 H 1.08007 * 119.97230 * 359.97438 * 3 2 1 28 28 H 1.08002 * 120.02792 * 179.97438 * 4 3 2 29 29 H 1.08996 * 109.47352 * 299.99771 * 7 6 5 30 30 H 1.08999 * 109.47144 * 59.99795 * 7 6 5 31 31 H 0.96995 * 120.00267 * 0.02562 * 10 8 7 32 32 H 1.09006 * 109.47300 * 299.99891 * 11 10 8 33 33 H 1.08999 * 109.47172 * 60.00041 * 11 10 8 34 34 H 1.08996 * 109.47254 * 299.99977 * 12 11 10 35 35 H 1.08999 * 109.47046 * 59.99881 * 12 11 10 36 36 H 0.97005 * 120.00048 * 179.97438 * 16 15 13 37 37 H 1.09007 * 109.47246 * 89.99992 * 22 21 5 38 38 H 1.09000 * 109.47282 * 209.99769 * 22 21 5 39 39 H 1.08999 * 109.47028 * 329.99951 * 22 21 5 40 40 H 1.08003 * 119.96792 * 180.31516 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1982 0.0000 4 6 3.5785 1.2009 0.0005 5 6 4.2734 0.0000 0.0005 6 8 5.6324 -0.0001 0.0016 7 6 6.2812 1.2731 0.0032 8 6 7.7752 1.0756 0.0048 9 8 8.2387 -0.0451 0.0051 10 7 8.5962 2.1445 0.0060 11 6 10.0485 1.9525 0.0082 12 6 10.7432 3.3157 0.0098 13 6 12.2372 3.1182 0.0114 14 1 12.6500 2.1203 0.0116 15 6 13.0771 4.2116 0.0135 16 7 12.5745 5.4269 0.0137 17 14 14.9290 3.9669 0.0162 18 1 15.2363 2.5140 0.0161 19 1 15.5134 4.5969 -1.1950 20 1 15.5096 4.5951 1.2301 21 6 3.5786 -1.2007 -0.0058 22 6 4.3302 -2.5068 -0.0121 23 6 2.1970 -1.1979 0.0004 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 1.6559 2.1328 -0.0004 28 1 4.1171 2.1370 0.0001 29 1 5.9891 1.8309 -0.8865 30 1 5.9876 1.8293 0.8935 31 1 8.2255 3.0408 0.0062 32 1 10.3402 1.3955 0.8986 33 1 10.3427 1.3955 -0.8814 34 1 10.4517 3.8731 -0.8804 35 1 10.4489 3.8724 0.8995 36 1 13.1654 6.1962 0.0156 37 1 4.5111 -2.8270 1.0141 38 1 3.7402 -3.2630 -0.5299 39 1 5.2830 -2.3753 -0.5249 40 1 1.6557 -2.1325 0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260292595.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:41 Heat of formation + Delta-G solvation = -91.045504 kcal Electronic energy + Delta-G solvation = -20182.416464 eV Core-core repulsion = 16960.850093 eV Total energy + Delta-G solvation = -3221.566371 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.50839 -40.48132 -38.53593 -36.62107 -34.86820 -34.17369 -32.50665 -31.96918 -29.62525 -28.11452 -27.00935 -26.35822 -23.51060 -22.78139 -21.62133 -21.55541 -19.18448 -18.56577 -18.23585 -17.48105 -17.02156 -16.56523 -16.35997 -16.13156 -15.76011 -15.22518 -15.01502 -14.84853 -14.43888 -14.31178 -14.09847 -13.96732 -13.72349 -13.32309 -13.23703 -12.99309 -12.76585 -12.71715 -12.54172 -12.26899 -12.21118 -11.80157 -11.77489 -11.66925 -11.45160 -10.91074 -10.62176 -10.11107 -9.75714 -8.93873 -8.25556 -6.35508 0.37873 0.44893 1.40236 1.41410 1.48298 1.53353 1.59111 2.39235 2.72869 2.76251 3.09503 3.58551 3.83781 3.89863 4.00543 4.07593 4.07959 4.35843 4.39407 4.46452 4.46847 4.57218 4.69508 4.77674 4.80768 4.83131 4.91788 5.02535 5.17116 5.21240 5.34407 5.38393 5.45802 5.50168 5.57004 5.69979 5.76936 5.88520 6.14693 6.35794 6.55058 6.77735 7.16258 7.33813 8.86343 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.045549 B = 0.002517 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.577921 B =11122.578911 C =11700.798350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.127 4.127 3 C -0.092 4.092 4 C -0.207 4.207 5 C 0.096 3.904 6 O -0.316 6.316 7 C 0.048 3.952 8 C 0.507 3.493 9 O -0.578 6.578 10 N -0.709 5.709 11 C 0.141 3.859 12 C 0.023 3.977 13 C -0.547 4.547 14 H 0.058 0.942 15 C 0.007 3.993 16 N -0.925 5.925 17 Si 0.964 3.036 18 H -0.267 1.267 19 H -0.276 1.276 20 H -0.277 1.277 21 C -0.131 4.131 22 C -0.104 4.104 23 C -0.089 4.089 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.148 0.852 28 H 0.148 0.852 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.416 0.584 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.012 0.988 35 H 0.012 0.988 36 H 0.266 0.734 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.049 0.951 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.703 -7.583 -0.040 26.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.127 4.127 3 C -0.110 4.110 4 C -0.226 4.226 5 C 0.051 3.949 6 O -0.229 6.229 7 C -0.030 4.030 8 C 0.293 3.707 9 O -0.457 6.457 10 N -0.362 5.362 11 C 0.018 3.982 12 C -0.015 4.015 13 C -0.585 4.585 14 H 0.076 0.924 15 C -0.192 4.192 16 N -0.565 5.565 17 Si 0.789 3.211 18 H -0.191 1.191 19 H -0.202 1.202 20 H -0.202 1.202 21 C -0.132 4.132 22 C -0.161 4.161 23 C -0.107 4.107 24 H 0.094 0.906 25 H 0.092 0.908 26 H 0.093 0.907 27 H 0.166 0.834 28 H 0.166 0.834 29 H 0.139 0.861 30 H 0.139 0.861 31 H 0.252 0.748 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.030 0.970 35 H 0.030 0.970 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.068 0.932 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -25.182 -8.366 -0.041 26.535 hybrid contribution 1.229 0.745 0.003 1.437 sum -23.952 -7.621 -0.038 25.136 Atomic orbital electron populations 1.20762 0.89038 1.03604 1.02937 1.20212 0.97735 0.92706 1.02056 1.21154 0.92946 0.98895 0.97966 1.21524 0.96200 0.96904 1.07928 1.19177 0.81469 0.95119 0.99156 1.86105 1.17256 1.30456 1.89106 1.22557 0.88223 0.85732 1.06471 1.20709 0.89312 0.84562 0.76089 1.90699 1.78550 1.25620 1.50831 1.45937 1.06916 1.09399 1.73913 1.21269 0.77865 0.99126 0.99985 1.19144 0.94507 0.91166 0.96666 1.21494 0.92445 0.93113 1.51471 0.92423 1.25850 1.04017 0.94836 0.94454 1.70052 1.36908 0.98484 1.51022 0.85408 0.79270 0.78526 0.77912 1.19108 1.20202 1.20211 1.19551 0.94238 0.93633 1.05759 1.20597 0.99519 0.93627 1.02368 1.21023 0.91565 0.99192 0.98907 0.90599 0.90822 0.90668 0.83443 0.83450 0.86102 0.86092 0.74773 0.93462 0.93453 0.96968 0.96963 0.92511 0.91399 0.89748 0.93208 0.83501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 10.01 71.23 0.71 -0.30 16 2 C -0.13 -1.98 5.88 -19.85 -0.12 -2.10 16 3 C -0.09 -1.46 9.69 22.25 0.22 -1.25 16 4 C -0.21 -3.94 9.04 22.36 0.20 -3.73 16 5 C 0.10 2.35 6.66 22.51 0.15 2.50 16 6 O -0.32 -9.21 8.72 -73.44 -0.64 -9.85 16 7 C 0.05 1.13 5.22 71.24 0.37 1.50 16 8 C 0.51 17.03 7.91 87.66 0.69 17.72 16 9 O -0.58 -25.32 16.50 16.03 0.26 -25.06 16 10 N -0.71 -23.48 5.56 -463.06 -2.57 -26.05 16 11 C 0.14 5.98 5.61 86.38 0.48 6.46 16 12 C 0.02 1.12 5.09 29.85 0.15 1.27 16 13 C -0.55 -30.31 9.11 25.60 0.23 -30.08 16 14 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 15 C 0.01 0.41 5.46 84.66 0.46 0.87 16 16 N -0.93 -53.55 13.29 21.45 0.28 -53.27 16 17 Si 0.96 43.45 29.54 68.60 2.03 45.47 16 18 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 19 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 20 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 21 C -0.13 -2.99 5.89 -19.77 -0.12 -3.11 16 22 C -0.10 -2.29 9.79 71.23 0.70 -1.59 16 23 C -0.09 -1.57 9.35 22.25 0.21 -1.37 16 24 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.07 0.57 8.08 -2.39 -0.02 0.55 16 26 H 0.07 0.56 8.08 -2.38 -0.02 0.55 16 27 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 28 H 0.15 2.10 6.30 -2.91 -0.02 2.08 16 29 H 0.12 2.09 7.66 -2.39 -0.02 2.08 16 30 H 0.12 2.10 7.66 -2.39 -0.02 2.08 16 31 H 0.42 10.98 8.47 -92.71 -0.79 10.19 16 32 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 33 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.01 0.61 8.14 -2.39 -0.02 0.60 16 35 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.27 14.43 8.31 -92.70 -0.77 13.66 16 37 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 38 H 0.08 1.40 8.09 -2.39 -0.02 1.38 16 39 H 0.05 1.33 7.53 -2.39 -0.02 1.31 16 40 H 0.15 1.87 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -71.96 342.53 3.96 -67.99 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 0.25 Total: 13.97 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: 4.35 Total: -13.21 kcal Atomic # 7 Polarization: -77.03 SS G_CDS: -2.29 Total: -79.32 kcal Atomic # 8 Polarization: -34.53 SS G_CDS: -0.38 Total: -34.91 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -71.96 3.96 -67.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260292595.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.051 kcal (2) G-P(sol) polarization free energy of solvation -71.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds