Wall clock time and date at job start Mon Mar 30 2020 02:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38266 * 119.94798 * 2 1 4 4 C 1.38142 * 120.05387 * 179.97438 * 3 2 1 5 5 C 1.50709 * 120.02423 * 180.02562 * 4 3 2 6 6 C 1.38729 * 119.94798 * 0.02562 * 4 3 2 7 7 O 1.35903 * 120.05592 * 179.97438 * 6 4 3 8 8 C 1.42901 * 117.00054 * 89.99635 * 7 6 4 9 9 C 1.50697 * 109.47339 * 179.97438 * 8 7 6 10 10 O 1.21295 * 119.99821 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00196 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99987 * 359.97438 * 11 9 8 13 13 C 1.37094 * 119.99901 * 180.02562 * 11 9 8 14 14 H 1.07995 * 120.00230 * 22.40359 * 13 11 9 15 15 C 1.38953 * 119.99897 * 202.40492 * 13 11 9 16 16 N 1.31408 * 119.99754 * 11.59736 * 15 13 11 17 17 Si 1.86803 * 120.00045 * 191.59420 * 15 13 11 18 18 H 1.48494 * 109.47082 * 59.99810 * 17 15 13 19 19 H 1.48498 * 109.46793 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.46995 * 299.99771 * 17 15 13 21 21 C 1.38728 * 119.88687 * 0.26878 * 6 4 3 22 22 C 1.50705 * 120.02713 * 179.72379 * 21 6 4 23 23 C 1.38146 * 119.94491 * 359.43357 * 21 6 4 24 24 H 1.09003 * 109.47187 * 89.99651 * 1 2 3 25 25 H 1.08992 * 109.47447 * 210.00458 * 1 2 3 26 26 H 1.09004 * 109.47036 * 330.00592 * 1 2 3 27 27 H 1.07997 * 119.96962 * 0.02562 * 3 2 1 28 28 H 1.09004 * 109.46755 * 269.97813 * 5 4 3 29 29 H 1.08995 * 109.47064 * 29.97655 * 5 4 3 30 30 H 1.08998 * 109.46881 * 149.98393 * 5 4 3 31 31 H 1.09000 * 109.47197 * 300.00082 * 8 7 6 32 32 H 1.09005 * 109.46763 * 60.00210 * 8 7 6 33 33 H 1.09000 * 109.47137 * 92.16195 * 12 11 9 34 34 H 1.08989 * 109.47396 * 212.16294 * 12 11 9 35 35 H 1.09007 * 109.47053 * 332.16557 * 12 11 9 36 36 H 0.97001 * 120.00326 * 179.97438 * 16 15 13 37 37 H 1.09002 * 109.47047 * 90.00244 * 22 21 6 38 38 H 1.09001 * 109.46772 * 210.00036 * 22 21 6 39 39 H 1.09003 * 109.47188 * 330.00138 * 22 21 6 40 40 H 1.07998 * 119.97638 * 180.31703 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1980 0.0000 4 6 3.5786 1.2006 0.0005 5 6 4.3303 2.5068 0.0011 6 6 4.2734 -0.0002 0.0005 7 8 5.6324 -0.0002 0.0005 8 6 6.2812 -0.0002 1.2738 9 6 7.7752 -0.0009 1.0764 10 8 8.2388 -0.0018 -0.0445 11 7 8.5962 -0.0015 2.1452 12 6 8.0363 -0.0009 3.4990 13 6 9.9553 -0.0016 1.9656 14 1 10.3774 0.3552 1.0378 15 6 10.7898 -0.4608 2.9773 16 7 10.2833 -1.1020 4.0064 17 14 12.6317 -0.1667 2.8744 18 1 12.8978 1.2933 2.8249 19 1 13.2935 -0.7498 4.0690 20 1 13.1678 -0.8095 1.6477 21 6 3.5785 -1.2009 -0.0056 22 6 4.3301 -2.5071 -0.0120 23 6 2.1971 -1.1982 0.0001 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8901 0.5138 27 1 1.6559 2.1325 0.0004 28 1 4.5122 2.8218 -1.0265 29 1 3.7398 3.2656 0.5145 30 1 5.2826 2.3778 0.5155 31 1 5.9884 0.8898 1.8307 32 1 5.9883 -0.8902 1.8308 33 1 7.9324 -1.0277 3.8496 34 1 8.7017 0.5456 4.1672 35 1 7.0580 0.4798 3.4873 36 1 10.8658 -1.4230 4.7125 37 1 4.5110 -2.8272 1.0142 38 1 3.7400 -3.2633 -0.5297 39 1 5.2829 -2.3757 -0.5249 40 1 1.6557 -2.1326 0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263853432.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:57 Heat of formation + Delta-G solvation = -50.296943 kcal Electronic energy + Delta-G solvation = -21523.066516 eV Core-core repulsion = 18303.267135 eV Total energy + Delta-G solvation = -3219.799381 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.18249 -38.48396 -36.97099 -34.61694 -33.50913 -32.65783 -31.67284 -28.41909 -27.87504 -26.64724 -26.27262 -25.49347 -23.97625 -20.88216 -20.61164 -19.23245 -17.53832 -16.86907 -16.57438 -15.81199 -15.12549 -14.75064 -14.54839 -14.26110 -14.02063 -13.81480 -13.36518 -13.20359 -13.01524 -12.96496 -12.87763 -12.54827 -12.45400 -12.01598 -11.74311 -11.59960 -11.43345 -11.26170 -11.19082 -11.04251 -10.93990 -10.86623 -10.41024 -10.28833 -9.53236 -9.04025 -8.54149 -8.36841 -8.21790 -7.71519 -6.32961 -3.89916 1.24469 1.37900 3.18739 3.24112 3.27019 3.43992 3.83225 3.95401 4.24276 4.76745 4.77617 4.84242 5.04451 5.10021 5.24311 5.25369 5.44815 5.47584 5.52533 5.56891 5.64790 5.71554 5.74685 5.78326 5.78983 5.83825 5.88771 5.92563 6.22461 6.25730 6.39731 6.48650 6.54885 6.69385 6.82530 6.87029 7.17405 7.55297 7.82100 8.12302 8.47467 9.16809 9.37671 9.94225 10.70850 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034355 B = 0.003846 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.832497 B = 7279.149421 C = 7483.304914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.093 4.093 3 C -0.118 4.118 4 C -0.095 4.095 5 C -0.112 4.112 6 C 0.093 3.907 7 O -0.306 6.306 8 C 0.062 3.938 9 C 0.448 3.552 10 O -0.568 6.568 11 N -0.444 5.444 12 C 0.110 3.890 13 C -0.305 4.305 14 H 0.100 0.900 15 C 0.031 3.969 16 N -0.884 5.884 17 Si 0.929 3.071 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.272 1.272 21 C -0.093 4.093 22 C -0.116 4.116 23 C -0.117 4.117 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.122 0.878 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.024 0.976 36 H 0.268 0.732 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.294 2.038 -1.711 17.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.093 4.093 3 C -0.136 4.136 4 C -0.095 4.095 5 C -0.168 4.168 6 C 0.049 3.951 7 O -0.222 6.222 8 C -0.015 4.015 9 C 0.235 3.765 10 O -0.451 6.451 11 N -0.165 5.165 12 C -0.034 4.034 13 C -0.433 4.433 14 H 0.117 0.883 15 C -0.172 4.172 16 N -0.524 5.524 17 Si 0.756 3.244 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.197 1.197 21 C -0.093 4.093 22 C -0.173 4.173 23 C -0.136 4.136 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.140 0.860 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.042 0.958 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -16.842 1.949 -2.221 17.100 hybrid contribution 0.704 0.005 0.459 0.840 sum -16.139 1.954 -1.761 16.352 Atomic orbital electron populations 1.20744 0.91252 1.02563 1.02118 1.19850 0.95916 0.93055 1.00470 1.20738 0.92767 0.97555 1.02527 1.20249 0.93892 0.95315 1.00046 1.20715 1.00187 0.93114 1.02805 1.18498 0.83671 0.91432 1.01499 1.86117 1.13911 1.94102 1.28021 1.22475 0.93515 1.01159 0.84380 1.19587 0.86342 0.84758 0.85823 1.90552 1.76739 1.54347 1.23470 1.43488 1.05823 1.63268 1.03956 1.21555 0.94888 1.01881 0.85038 1.19627 0.79715 1.40566 1.03395 0.88268 1.25347 1.00585 0.95265 0.96028 1.69983 1.36144 1.35550 1.10690 0.85949 0.81931 0.78779 0.77765 1.19878 1.20929 1.19721 1.20264 0.93879 0.95370 0.99808 1.20748 1.00902 0.93066 1.02560 1.20759 0.92798 0.97566 1.02434 0.91352 0.91683 0.91698 0.85971 0.90841 0.91785 0.91013 0.91705 0.91419 0.92196 0.90941 0.95787 0.92156 0.91210 0.91643 0.90211 0.85952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.01 36.00 0.36 -0.53 16 2 C -0.09 -1.07 5.88 -104.60 -0.62 -1.69 16 3 C -0.12 -1.44 9.35 -39.61 -0.37 -1.81 16 4 C -0.09 -1.39 5.89 -104.47 -0.62 -2.00 16 5 C -0.11 -1.51 9.79 36.01 0.35 -1.15 16 6 C 0.09 1.57 5.67 -39.22 -0.22 1.34 16 7 O -0.31 -6.16 7.85 -39.34 -0.31 -6.47 16 8 C 0.06 1.24 4.69 36.00 0.17 1.41 16 9 C 0.45 11.36 7.70 -10.99 -0.08 11.28 16 10 O -0.57 -16.63 16.19 -14.36 -0.23 -16.86 16 11 N -0.44 -11.54 3.02 -122.20 -0.37 -11.91 16 12 C 0.11 2.45 8.52 59.85 0.51 2.96 16 13 C -0.31 -8.59 9.29 -14.93 -0.14 -8.73 16 14 H 0.10 2.92 7.41 -52.49 -0.39 2.53 16 15 C 0.03 0.81 5.11 -17.47 -0.09 0.72 16 16 N -0.88 -23.44 10.62 55.50 0.59 -22.85 16 17 Si 0.93 20.79 29.57 -169.99 -5.03 15.76 16 18 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 19 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 21 C -0.09 -1.38 5.89 -104.47 -0.62 -1.99 16 22 C -0.12 -1.62 9.79 36.01 0.35 -1.27 16 23 C -0.12 -1.46 9.35 -39.60 -0.37 -1.83 16 24 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 26 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 27 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 30 H 0.07 1.10 6.32 -51.93 -0.33 0.77 16 31 H 0.07 1.15 6.52 -51.93 -0.34 0.81 16 32 H 0.07 1.25 8.11 -51.93 -0.42 0.83 16 33 H 0.06 1.37 7.54 -51.93 -0.39 0.98 16 34 H 0.07 1.68 7.06 -51.94 -0.37 1.31 16 35 H 0.02 0.44 6.36 -51.92 -0.33 0.10 16 36 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.75 8.09 -51.93 -0.42 0.33 16 39 H 0.08 1.31 7.53 -51.93 -0.39 0.91 16 40 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 333.56 15.07 5.03 5.03 Total: -1.00 -32.11 333.56 -7.58 -39.69 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -5.88 Total: 0.91 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -1.38 Total: -3.30 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.22 Total: -34.76 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.54 Total: -23.32 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.11 -7.58 -39.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263853432.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.606 kcal (2) G-P(sol) polarization free energy of solvation -32.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds