Wall clock time and date at job start Mon Mar 30 2020 01:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86806 * 119.99703 * 2 1 4 4 H 1.48498 * 109.46973 * 269.99926 * 3 2 1 5 5 H 1.48496 * 109.47197 * 30.00176 * 3 2 1 6 6 H 1.48506 * 109.46690 * 150.00084 * 3 2 1 7 7 C 1.38656 * 120.00177 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99636 * 359.97438 * 7 2 1 9 9 O 1.34829 * 119.99977 * 180.02562 * 7 2 1 10 10 C 1.35746 * 116.99868 * 185.36972 * 9 7 2 11 11 C 1.38875 * 120.07137 * 5.83623 * 10 9 7 12 12 C 1.38095 * 119.93447 * 180.02562 * 11 10 9 13 13 C 1.38296 * 120.06850 * 0.02841 * 12 11 10 14 14 C 1.50703 * 119.93419 * 179.97438 * 13 12 11 15 15 N 1.46905 * 109.46923 * 89.99685 * 14 13 12 16 16 C 1.46904 * 110.99788 * 170.01321 * 15 14 13 17 17 C 1.52991 * 109.47319 * 285.76960 * 16 15 14 18 18 O 1.42900 * 109.47432 * 68.16732 * 17 16 15 19 19 C 1.46899 * 111.00152 * 293.97034 * 15 14 13 20 20 C 1.53005 * 117.49554 * 246.14301 * 19 15 14 21 21 C 1.52995 * 117.49791 * 177.48148 * 19 15 14 22 22 C 1.38308 * 120.13744 * 0.24538 * 13 12 11 23 23 C 1.38098 * 120.06590 * 359.45742 * 22 13 12 24 24 H 0.97006 * 120.00179 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.03632 * 0.02562 * 11 10 9 26 26 H 1.08001 * 119.96920 * 179.97438 * 12 11 10 27 27 H 1.08997 * 109.47057 * 330.00356 * 14 13 12 28 28 H 1.08996 * 109.47232 * 209.99571 * 14 13 12 29 29 H 1.09005 * 109.46666 * 165.76613 * 16 15 14 30 30 H 1.08997 * 109.46657 * 45.77203 * 16 15 14 31 31 H 1.09002 * 109.47452 * 308.16758 * 17 16 15 32 32 H 1.09004 * 109.47324 * 188.16742 * 17 16 15 33 33 H 0.96701 * 114.00592 * 180.02562 * 18 17 16 34 34 H 1.08997 * 115.55107 * 31.80868 * 19 15 14 35 35 H 1.08994 * 117.50109 * 359.97438 * 20 19 15 36 36 H 1.09002 * 117.49636 * 145.02529 * 20 19 15 37 37 H 1.08998 * 117.50009 * 214.97346 * 21 19 15 38 38 H 1.08996 * 117.49967 * 359.97438 * 21 19 15 39 39 H 1.08004 * 119.96147 * 179.70715 * 22 13 12 40 40 H 1.08002 * 120.03040 * 180.27143 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4469 2.6527 0.7001 6 1 3.5471 1.4402 0.7001 7 6 2.0089 -1.2008 -0.0005 8 1 1.4688 -2.1360 -0.0005 9 8 3.3571 -1.2007 0.0000 10 6 3.9735 -2.4048 -0.1138 11 6 3.2242 -3.5510 -0.3453 12 6 3.8541 -4.7745 -0.4600 13 6 5.2295 -4.8594 -0.3440 14 6 5.9137 -6.1963 -0.4691 15 7 6.2631 -6.4378 -1.8755 16 6 7.1359 -7.6121 -2.0069 17 6 8.5444 -7.2570 -1.5266 18 8 8.5250 -7.0371 -0.1147 19 6 5.0562 -6.5840 -2.7001 20 6 4.7927 -7.9531 -3.3302 21 6 5.2486 -6.7825 -4.2049 22 6 5.9781 -3.7206 -0.1078 23 6 5.3546 -2.4933 0.0018 24 1 -0.4851 0.8401 0.0004 25 1 2.1500 -3.4855 -0.4356 26 1 3.2719 -5.6663 -0.6397 27 1 5.2428 -6.9818 -0.1215 28 1 6.8203 -6.1986 0.1360 29 1 7.1752 -7.9205 -3.0516 30 1 6.7406 -8.4281 -1.4018 31 1 8.8827 -6.3517 -2.0306 32 1 9.2245 -8.0770 -1.7573 33 1 9.3865 -6.8068 0.2594 34 1 4.1919 -6.0047 -2.3753 35 1 5.5150 -8.7452 -3.1332 36 1 3.7550 -8.2743 -3.4204 37 1 4.5107 -6.3342 -4.8701 38 1 6.2707 -6.8042 -4.5830 39 1 7.0516 -3.7908 -0.0129 40 1 5.9401 -1.6038 0.1819 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264538156.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:20 Heat of formation + Delta-G solvation = -10.357630 kcal Electronic energy + Delta-G solvation = -21331.900663 eV Core-core repulsion = 18113.833181 eV Total energy + Delta-G solvation = -3218.067482 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.60094 -38.76504 -36.82500 -36.58795 -33.67223 -32.35616 -30.72653 -30.14512 -28.17536 -25.56683 -24.11393 -23.08725 -22.32413 -21.84692 -20.58616 -19.51231 -17.89614 -17.71796 -17.13151 -16.43082 -16.00718 -15.07990 -14.82975 -14.37081 -14.05665 -13.93928 -13.78516 -13.55550 -13.38185 -12.66960 -12.52748 -12.32369 -12.17498 -12.06556 -11.79329 -11.74019 -11.37853 -11.19626 -10.72680 -10.65193 -10.63186 -10.48236 -10.27211 -10.06862 -9.91333 -9.35449 -8.82973 -8.17299 -8.05489 -7.23946 -6.38409 -4.04620 2.19157 2.26359 3.24296 3.28091 3.43109 3.73065 3.97643 4.15534 4.26832 4.60738 4.80654 4.91424 4.94238 4.97539 5.03423 5.10557 5.13137 5.27777 5.40354 5.52983 5.56839 5.58971 5.68219 5.84548 5.86553 5.89604 6.01033 6.09108 6.19517 6.28101 6.42373 6.66698 6.86674 7.04043 7.18343 7.23027 7.33378 7.41274 7.49094 7.67930 7.84318 8.08319 8.97371 9.61129 10.69490 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026235 B = 0.003983 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.027863 B = 7027.638182 C = 7634.447863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.259 1.259 7 C -0.388 4.388 8 H 0.105 0.895 9 O -0.219 6.219 10 C 0.159 3.841 11 C -0.220 4.220 12 C -0.073 4.073 13 C -0.164 4.164 14 C 0.102 3.898 15 N -0.497 5.497 16 C 0.047 3.953 17 C 0.080 3.920 18 O -0.566 6.566 19 C 0.025 3.975 20 C -0.227 4.227 21 C -0.175 4.175 22 C -0.054 4.054 23 C -0.194 4.194 24 H 0.279 0.721 25 H 0.131 0.869 26 H 0.105 0.895 27 H 0.029 0.971 28 H 0.109 0.891 29 H 0.086 0.914 30 H 0.043 0.957 31 H 0.056 0.944 32 H 0.045 0.955 33 H 0.374 0.626 34 H 0.128 0.872 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.113 0.887 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.026 -14.791 -4.226 21.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.464 4.464 8 H 0.122 0.878 9 O -0.125 6.125 10 C 0.107 3.893 11 C -0.239 4.239 12 C -0.091 4.091 13 C -0.165 4.165 14 C -0.024 4.024 15 N -0.219 5.219 16 C -0.080 4.080 17 C 0.002 3.998 18 O -0.373 6.373 19 C -0.084 4.084 20 C -0.266 4.266 21 C -0.212 4.212 22 C -0.073 4.073 23 C -0.213 4.213 24 H 0.089 0.911 25 H 0.149 0.851 26 H 0.123 0.877 27 H 0.047 0.953 28 H 0.127 0.873 29 H 0.104 0.896 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.222 0.778 34 H 0.146 0.854 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.114 0.886 38 H 0.111 0.889 39 H 0.131 0.869 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 14.549 -14.149 -4.429 20.772 hybrid contribution 0.135 0.058 0.111 0.184 sum 14.685 -14.091 -4.317 20.805 Atomic orbital electron populations 1.69649 1.05569 1.28411 1.48354 1.24461 0.95012 0.98799 0.95750 0.86184 0.80352 0.81460 0.78928 1.19934 1.20825 1.18340 1.20753 0.76989 0.96561 1.52069 0.87757 1.83586 1.22504 1.25794 1.80577 1.19138 0.91670 0.85541 0.92928 1.21231 1.01006 0.92277 1.09425 1.20674 0.93738 0.96415 0.98299 1.19235 0.93091 0.94555 1.09640 1.21212 1.00405 0.93228 0.87566 1.61954 1.14371 1.36060 1.09472 1.22285 0.92593 0.92476 1.00678 1.22230 0.96415 0.99469 0.81693 1.86497 1.35880 1.92819 1.22057 1.22869 0.95015 0.97499 0.93033 1.23592 1.02378 0.93167 1.07483 1.23036 1.02310 1.01903 0.93994 1.20453 0.98319 0.91132 0.97369 1.20214 0.91922 0.97975 1.11175 0.91120 0.85130 0.87730 0.95278 0.87281 0.89571 0.93853 0.92587 0.93662 0.77818 0.85410 0.88783 0.89010 0.88560 0.88919 0.86931 0.86677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.75 13.96 55.48 0.77 -24.98 16 2 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 3 Si 0.91 21.97 28.62 -169.99 -4.86 17.10 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.26 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.39 -11.10 9.90 30.89 0.31 -10.80 16 8 H 0.11 3.05 5.53 -52.49 -0.29 2.76 16 9 O -0.22 -5.90 8.59 0.06 0.00 -5.90 16 10 C 0.16 3.76 6.65 -39.11 -0.26 3.50 16 11 C -0.22 -4.84 9.13 -39.40 -0.36 -5.20 16 12 C -0.07 -1.35 7.99 -39.61 -0.32 -1.66 16 13 C -0.16 -2.83 5.02 -104.57 -0.53 -3.36 16 14 C 0.10 1.48 4.90 -4.97 -0.02 1.45 16 15 N -0.50 -6.57 4.65 -228.08 -1.06 -7.63 16 16 C 0.05 0.50 4.15 -3.83 -0.02 0.48 16 17 C 0.08 0.71 7.33 37.15 0.27 0.98 16 18 O -0.57 -5.38 10.70 -35.23 -0.38 -5.76 16 19 C 0.03 0.33 5.82 -67.71 -0.39 -0.06 16 20 C -0.23 -2.44 9.56 -26.69 -0.26 -2.69 16 21 C -0.17 -1.97 9.92 -26.69 -0.26 -2.24 16 22 C -0.05 -0.96 9.69 -39.61 -0.38 -1.34 16 23 C -0.19 -3.95 9.99 -39.40 -0.39 -4.34 16 24 H 0.28 7.52 8.31 -40.82 -0.34 7.18 16 25 H 0.13 3.02 5.72 -52.49 -0.30 2.72 16 26 H 0.10 1.72 7.42 -52.49 -0.39 1.33 16 27 H 0.03 0.43 8.06 -51.93 -0.42 0.01 16 28 H 0.11 1.56 4.96 -51.93 -0.26 1.30 16 29 H 0.09 0.79 5.65 -51.93 -0.29 0.50 16 30 H 0.04 0.47 7.83 -51.93 -0.41 0.07 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.37 1.95 9.12 45.56 0.42 2.37 16 34 H 0.13 1.92 5.23 -51.93 -0.27 1.64 16 35 H 0.09 0.91 6.01 -51.93 -0.31 0.60 16 36 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.09 0.98 7.50 -51.93 -0.39 0.59 16 39 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 40 H 0.12 2.19 8.06 -52.49 -0.42 1.77 16 LS Contribution 323.41 15.07 4.87 4.87 Total: -1.00 -30.92 323.41 -7.95 -38.87 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -4.58 Total: 7.02 kcal Atomic # 6 Polarization: -20.89 SS G_CDS: -2.71 Total: -23.60 kcal Atomic # 7 Polarization: -32.32 SS G_CDS: -0.29 Total: -32.60 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -0.38 Total: -11.66 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.86 Total: 17.10 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.92 -7.95 -38.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264538156.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.512 kcal (2) G-P(sol) polarization free energy of solvation -30.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds