Wall clock time and date at job start Mon Mar 30 2020 01:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86806 * 119.99703 * 2 1 4 4 H 1.48498 * 109.46973 * 269.99926 * 3 2 1 5 5 H 1.48496 * 109.47197 * 30.00176 * 3 2 1 6 6 H 1.48506 * 109.46690 * 150.00084 * 3 2 1 7 7 C 1.38656 * 120.00177 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99636 * 359.97438 * 7 2 1 9 9 O 1.34829 * 119.99977 * 180.02562 * 7 2 1 10 10 C 1.35746 * 116.99868 * 185.36972 * 9 7 2 11 11 C 1.38875 * 120.07137 * 5.83623 * 10 9 7 12 12 C 1.38095 * 119.93447 * 180.02562 * 11 10 9 13 13 C 1.38296 * 120.06850 * 0.02841 * 12 11 10 14 14 C 1.50703 * 119.93419 * 179.97438 * 13 12 11 15 15 N 1.46905 * 109.46923 * 89.99685 * 14 13 12 16 16 C 1.46904 * 110.99788 * 170.01321 * 15 14 13 17 17 C 1.52991 * 109.47319 * 285.76960 * 16 15 14 18 18 O 1.42900 * 109.47432 * 68.16732 * 17 16 15 19 19 C 1.46899 * 111.00152 * 293.97034 * 15 14 13 20 20 C 1.53005 * 117.49554 * 246.14301 * 19 15 14 21 21 C 1.52995 * 117.49791 * 177.48148 * 19 15 14 22 22 C 1.38308 * 120.13744 * 0.24538 * 13 12 11 23 23 C 1.38098 * 120.06590 * 359.45742 * 22 13 12 24 24 H 0.97006 * 120.00179 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.03632 * 0.02562 * 11 10 9 26 26 H 1.08001 * 119.96920 * 179.97438 * 12 11 10 27 27 H 1.08997 * 109.47057 * 330.00356 * 14 13 12 28 28 H 1.08996 * 109.47232 * 209.99571 * 14 13 12 29 29 H 1.09005 * 109.46666 * 165.76613 * 16 15 14 30 30 H 1.08997 * 109.46657 * 45.77203 * 16 15 14 31 31 H 1.09002 * 109.47452 * 308.16758 * 17 16 15 32 32 H 1.09004 * 109.47324 * 188.16742 * 17 16 15 33 33 H 0.96701 * 114.00592 * 180.02562 * 18 17 16 34 34 H 1.08997 * 115.55107 * 31.80868 * 19 15 14 35 35 H 1.08994 * 117.50109 * 359.97438 * 20 19 15 36 36 H 1.09002 * 117.49636 * 145.02529 * 20 19 15 37 37 H 1.08998 * 117.50009 * 214.97346 * 21 19 15 38 38 H 1.08996 * 117.49967 * 359.97438 * 21 19 15 39 39 H 1.08004 * 119.96147 * 179.70715 * 22 13 12 40 40 H 1.08002 * 120.03040 * 180.27143 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4469 2.6527 0.7001 6 1 3.5471 1.4402 0.7001 7 6 2.0089 -1.2008 -0.0005 8 1 1.4688 -2.1360 -0.0005 9 8 3.3571 -1.2007 0.0000 10 6 3.9735 -2.4048 -0.1138 11 6 3.2242 -3.5510 -0.3453 12 6 3.8541 -4.7745 -0.4600 13 6 5.2295 -4.8594 -0.3440 14 6 5.9137 -6.1963 -0.4691 15 7 6.2631 -6.4378 -1.8755 16 6 7.1359 -7.6121 -2.0069 17 6 8.5444 -7.2570 -1.5266 18 8 8.5250 -7.0371 -0.1147 19 6 5.0562 -6.5840 -2.7001 20 6 4.7927 -7.9531 -3.3302 21 6 5.2486 -6.7825 -4.2049 22 6 5.9781 -3.7206 -0.1078 23 6 5.3546 -2.4933 0.0018 24 1 -0.4851 0.8401 0.0004 25 1 2.1500 -3.4855 -0.4356 26 1 3.2719 -5.6663 -0.6397 27 1 5.2428 -6.9818 -0.1215 28 1 6.8203 -6.1986 0.1360 29 1 7.1752 -7.9205 -3.0516 30 1 6.7406 -8.4281 -1.4018 31 1 8.8827 -6.3517 -2.0306 32 1 9.2245 -8.0770 -1.7573 33 1 9.3865 -6.8068 0.2594 34 1 4.1919 -6.0047 -2.3753 35 1 5.5150 -8.7452 -3.1332 36 1 3.7550 -8.2743 -3.4204 37 1 4.5107 -6.3342 -4.8701 38 1 6.2707 -6.8042 -4.5830 39 1 7.0516 -3.7908 -0.0129 40 1 5.9401 -1.6038 0.1819 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264538156.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:19 Heat of formation + Delta-G solvation = -31.981293 kcal Electronic energy + Delta-G solvation = -21332.838335 eV Core-core repulsion = 18113.833181 eV Total energy + Delta-G solvation = -3219.005155 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.02980 -40.09404 -38.25604 -37.49403 -34.79707 -34.35677 -32.03943 -31.70284 -29.33291 -27.40558 -25.54938 -23.99541 -23.60492 -22.98707 -22.10992 -20.58394 -19.77395 -19.04389 -18.45493 -17.34442 -16.95515 -16.59232 -16.40255 -15.74311 -15.59162 -15.52576 -14.97291 -14.94921 -14.45689 -14.34560 -14.14182 -14.05167 -13.27905 -13.17609 -13.06573 -12.81029 -12.63117 -12.43050 -12.35819 -12.19047 -12.02932 -11.80557 -11.41325 -11.31418 -11.16120 -10.89698 -10.65082 -9.77072 -9.11616 -8.89873 -8.50126 -6.22506 0.57638 0.64540 1.31245 1.35697 1.52335 2.28484 2.64126 2.87571 3.06116 3.12756 3.23982 3.53987 3.86676 4.01373 4.04336 4.09143 4.14487 4.18861 4.30478 4.38689 4.54287 4.60851 4.62203 4.73249 4.76550 4.83798 4.90202 4.99347 5.04336 5.07974 5.19359 5.23345 5.32852 5.39797 5.59397 5.77271 5.83274 5.91332 6.17259 6.20841 6.28328 6.84371 7.03161 7.59413 8.61748 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026235 B = 0.003983 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.027863 B = 7027.638182 C = 7634.447863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.010 3.990 3 Si 0.971 3.029 4 H -0.266 1.266 5 H -0.266 1.266 6 H -0.262 1.262 7 C -0.399 4.399 8 H 0.078 0.922 9 O -0.245 6.245 10 C 0.119 3.881 11 C -0.235 4.235 12 C -0.071 4.071 13 C -0.141 4.141 14 C 0.108 3.892 15 N -0.502 5.502 16 C 0.045 3.955 17 C 0.082 3.918 18 O -0.587 6.587 19 C -0.004 4.004 20 C -0.209 4.209 21 C -0.169 4.169 22 C -0.048 4.048 23 C -0.191 4.191 24 H 0.285 0.715 25 H 0.105 0.895 26 H 0.124 0.876 27 H 0.028 0.972 28 H 0.121 0.879 29 H 0.101 0.899 30 H 0.041 0.959 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.393 0.607 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.150 0.850 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.349 -16.318 -4.771 25.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.188 4.188 3 Si 0.793 3.207 4 H -0.191 1.191 5 H -0.191 1.191 6 H -0.186 1.186 7 C -0.476 4.476 8 H 0.095 0.905 9 O -0.153 6.153 10 C 0.070 3.930 11 C -0.254 4.254 12 C -0.089 4.089 13 C -0.142 4.142 14 C -0.018 4.018 15 N -0.224 5.224 16 C -0.083 4.083 17 C 0.004 3.996 18 O -0.396 6.396 19 C -0.113 4.113 20 C -0.248 4.248 21 C -0.207 4.207 22 C -0.066 4.066 23 C -0.210 4.210 24 H 0.094 0.906 25 H 0.123 0.877 26 H 0.142 0.858 27 H 0.046 0.954 28 H 0.138 0.862 29 H 0.119 0.881 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.244 0.756 34 H 0.121 0.879 35 H 0.128 0.872 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.122 0.878 39 H 0.168 0.832 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 17.908 -15.718 -4.977 24.342 hybrid contribution -0.719 0.193 0.242 0.783 sum 17.189 -15.525 -4.735 23.642 Atomic orbital electron populations 1.69733 1.06932 1.29596 1.50266 1.25288 0.95882 1.02172 0.95487 0.85208 0.78843 0.77324 0.79277 1.19129 1.19069 1.18617 1.20683 0.78187 0.96031 1.52654 0.90471 1.83522 1.21125 1.27413 1.83226 1.19662 0.93178 0.85105 0.95085 1.21210 0.99995 0.93617 1.10609 1.20874 0.94812 0.95678 0.97560 1.19701 0.92479 0.96223 1.05789 1.21169 1.00473 0.91077 0.89129 1.61937 1.14492 1.37963 1.08051 1.22432 0.92870 0.91225 1.01728 1.22230 0.95623 1.00330 0.81395 1.86399 1.37803 1.92965 1.22423 1.22824 0.94694 0.99407 0.94365 1.23619 1.03038 0.92537 1.05574 1.23091 1.03011 1.01856 0.92726 1.20867 1.00117 0.89929 0.95687 1.20524 0.90525 0.99783 1.10127 0.90573 0.87670 0.85807 0.95356 0.86163 0.88122 0.94117 0.92872 0.91096 0.75648 0.87899 0.87194 0.88741 0.88718 0.87750 0.83245 0.85297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.22 13.96 21.61 0.30 -55.92 16 2 C 0.01 0.58 5.49 84.83 0.47 1.05 16 3 Si 0.97 46.29 28.62 68.60 1.96 48.26 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.26 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.40 -24.18 9.90 67.92 0.67 -23.50 16 8 H 0.08 4.92 5.53 -2.91 -0.02 4.90 16 9 O -0.25 -13.73 8.59 -22.69 -0.19 -13.93 16 10 C 0.12 5.77 6.65 22.58 0.15 5.92 16 11 C -0.24 -10.83 9.13 22.39 0.20 -10.62 16 12 C -0.07 -2.62 7.99 22.25 0.18 -2.44 16 13 C -0.14 -4.59 5.02 -19.83 -0.10 -4.69 16 14 C 0.11 2.82 4.90 85.56 0.42 3.24 16 15 N -0.50 -11.80 4.65 -875.52 -4.07 -15.87 16 16 C 0.04 0.77 4.15 86.30 0.36 1.13 16 17 C 0.08 1.12 7.33 71.98 0.53 1.64 16 18 O -0.59 -8.87 10.70 -148.98 -1.59 -10.46 16 19 C 0.00 -0.09 5.82 44.92 0.26 0.17 16 20 C -0.21 -3.93 9.56 30.62 0.29 -3.64 16 21 C -0.17 -3.43 9.92 30.62 0.30 -3.13 16 22 C -0.05 -1.57 9.69 22.25 0.22 -1.35 16 23 C -0.19 -7.60 9.99 22.39 0.22 -7.37 16 24 H 0.28 15.84 8.31 -92.70 -0.77 15.07 16 25 H 0.11 5.33 5.72 -2.91 -0.02 5.31 16 26 H 0.12 4.05 7.42 -2.91 -0.02 4.03 16 27 H 0.03 0.76 8.06 -2.39 -0.02 0.74 16 28 H 0.12 2.98 4.96 -2.39 -0.01 2.96 16 29 H 0.10 1.43 5.65 -2.38 -0.01 1.42 16 30 H 0.04 0.74 7.83 -2.39 -0.02 0.72 16 31 H 0.05 0.76 8.14 -2.39 -0.02 0.75 16 32 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.39 2.60 9.12 -74.06 -0.68 1.92 16 34 H 0.10 3.02 5.23 -2.39 -0.01 3.01 16 35 H 0.11 1.73 6.01 -2.39 -0.01 1.72 16 36 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.09 1.93 8.14 -2.39 -0.02 1.92 16 38 H 0.10 1.87 7.50 -2.39 -0.02 1.85 16 39 H 0.15 3.89 8.06 -2.91 -0.02 3.86 16 40 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 Total: -1.00 -69.61 323.41 0.97 -68.65 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: 0.39 Total: 22.87 kcal Atomic # 6 Polarization: -47.77 SS G_CDS: 4.17 Total: -43.60 kcal Atomic # 7 Polarization: -68.02 SS G_CDS: -3.77 Total: -71.79 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -1.79 Total: -24.39 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 1.96 Total: 48.26 kcal Total: -69.61 0.97 -68.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264538156.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.668 kcal (2) G-P(sol) polarization free energy of solvation -69.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds