Wall clock time and date at job start Mon Mar 30 2020 01:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86799 * 119.99872 * 2 1 4 4 H 1.48501 * 109.46927 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47291 * 300.00118 * 3 2 1 6 6 H 1.48495 * 109.47132 * 60.00340 * 3 2 1 7 7 C 1.38652 * 120.00021 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00120 * 180.02562 * 7 2 1 9 9 O 1.34830 * 120.00222 * 359.97438 * 7 2 1 10 10 C 1.35748 * 117.00158 * 185.06116 * 9 7 2 11 11 C 1.38874 * 120.06919 * 354.45958 * 10 9 7 12 12 C 1.38104 * 119.93261 * 180.25382 * 11 10 9 13 13 C 1.38305 * 120.06272 * 359.47791 * 12 11 10 14 14 C 1.50701 * 119.92884 * 180.23165 * 13 12 11 15 15 N 1.46906 * 109.47181 * 270.27442 * 14 13 12 16 16 C 1.46849 * 110.99612 * 66.04291 * 15 14 13 17 17 C 1.53047 * 109.51700 * 174.16081 * 16 15 14 18 18 C 1.53121 * 109.27494 * 59.18396 * 17 16 15 19 19 C 1.53121 * 109.16002 * 302.34071 * 18 17 16 20 20 H 1.09002 * 109.50077 * 297.71291 * 19 18 17 21 21 O 1.42903 * 109.50015 * 177.63983 * 19 18 17 22 22 C 1.46846 * 110.99552 * 301.83606 * 15 14 13 23 23 C 1.38293 * 120.14151 * 0.50585 * 13 12 11 24 24 C 1.38102 * 120.07039 * 359.76623 * 23 13 12 25 25 H 0.96996 * 119.99996 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.03448 * 359.97438 * 11 10 9 27 27 H 1.07999 * 119.97135 * 179.70079 * 12 11 10 28 28 H 1.09002 * 109.47120 * 30.27444 * 14 13 12 29 29 H 1.09000 * 109.47265 * 150.27499 * 14 13 12 30 30 H 1.08994 * 109.46891 * 294.17681 * 16 15 14 31 31 H 1.09004 * 109.46460 * 54.16231 * 16 15 14 32 32 H 1.08997 * 109.49776 * 179.12069 * 17 16 15 33 33 H 1.08998 * 109.50513 * 299.20114 * 17 16 15 34 34 H 1.09003 * 109.52471 * 62.24945 * 18 17 16 35 35 H 1.08998 * 109.51745 * 182.43752 * 18 17 16 36 36 H 0.96696 * 114.00312 * 60.00257 * 21 19 18 37 37 H 1.08996 * 109.46602 * 305.85226 * 22 15 14 38 38 H 1.09002 * 109.46112 * 65.82545 * 22 15 14 39 39 H 1.08006 * 119.96641 * 179.74746 * 23 13 12 40 40 H 1.07996 * 120.03470 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3464 0.0006 5 1 1.8908 2.3964 -1.2124 6 1 1.8909 2.3964 1.2125 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0001 9 8 1.3348 -2.3684 -0.0005 10 6 2.0701 -3.5046 0.1056 11 6 3.4572 -3.4395 0.0921 12 6 4.2025 -4.5976 0.1950 13 6 3.5688 -5.8203 0.3223 14 6 4.3850 -7.0816 0.4396 15 7 4.6428 -7.6246 -0.9008 16 6 5.5029 -6.7227 -1.6774 17 6 5.8683 -7.3845 -3.0082 18 6 4.5870 -7.6945 -3.7871 19 6 3.6876 -8.5958 -2.9367 20 1 4.1962 -9.5406 -2.7448 21 8 2.4656 -8.8450 -3.6343 22 6 3.3854 -7.8990 -1.6080 23 6 2.1876 -5.8884 0.3364 24 6 1.4367 -4.7345 0.2283 25 1 -0.4850 0.8400 0.0004 26 1 3.9526 -2.4846 -0.0033 27 1 5.2812 -4.5481 0.1797 28 1 5.3327 -6.8569 0.9290 29 1 3.8365 -7.8158 1.0297 30 1 4.9722 -5.7902 -1.8692 31 1 6.4125 -6.5137 -1.1142 32 1 6.4939 -6.7085 -3.5910 33 1 6.4119 -8.3098 -2.8173 34 1 4.0635 -6.7653 -4.0120 35 1 4.8402 -8.2051 -4.7162 36 1 2.5825 -9.2833 -4.4883 37 1 2.7568 -8.5442 -0.9943 38 1 2.8646 -6.9610 -1.8001 39 1 1.6956 -6.8452 0.4319 40 1 0.3581 -4.7884 0.2389 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264592118.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:13 Heat of formation + Delta-G solvation = -78.510737 kcal Electronic energy + Delta-G solvation = -21634.239014 eV Core-core repulsion = 18413.216191 eV Total energy + Delta-G solvation = -3221.022823 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.17952 -40.15357 -38.43623 -36.94975 -34.49741 -33.92913 -31.98946 -30.91176 -30.46169 -27.72788 -26.72206 -24.20135 -23.85276 -23.16782 -22.08316 -20.62351 -19.89009 -18.85779 -18.25995 -16.97646 -16.56013 -16.48370 -16.16703 -15.83788 -15.58452 -15.44287 -15.18501 -15.06006 -14.53087 -14.28744 -14.18012 -14.08474 -13.60339 -13.45856 -13.01199 -12.80540 -12.53115 -12.46012 -12.42685 -12.14217 -12.12034 -11.90025 -11.72299 -11.32713 -11.21361 -10.84295 -10.73782 -9.81722 -9.38359 -8.94817 -8.50735 -6.19531 0.53673 0.61722 1.32455 1.41015 1.51182 2.14746 2.68097 2.87861 3.14005 3.46820 3.60118 3.80944 3.88310 4.00303 4.07728 4.08420 4.15540 4.29173 4.38240 4.52818 4.54500 4.59499 4.72787 4.77336 4.81836 4.94130 4.97141 5.00279 5.06540 5.08232 5.11417 5.15542 5.24412 5.40998 5.51319 5.66238 5.70535 5.98820 6.06715 6.12811 6.17372 6.91059 6.93671 7.74108 8.72807 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024136 B = 0.004033 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.814416 B = 6941.150386 C = 7001.196041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.023 4.023 3 Si 1.020 2.980 4 H -0.251 1.251 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.415 4.415 8 H 0.101 0.899 9 O -0.233 6.233 10 C 0.115 3.885 11 C -0.244 4.244 12 C -0.055 4.055 13 C -0.195 4.195 14 C 0.111 3.889 15 N -0.515 5.515 16 C 0.042 3.958 17 C -0.108 4.108 18 C -0.152 4.152 19 C 0.111 3.889 20 H 0.077 0.923 21 O -0.589 6.589 22 C 0.057 3.943 23 C -0.055 4.055 24 C -0.209 4.209 25 H 0.273 0.727 26 H 0.118 0.882 27 H 0.140 0.860 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.018 0.982 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.042 0.958 35 H 0.087 0.913 36 H 0.396 0.604 37 H 0.078 0.922 38 H 0.019 0.981 39 H 0.139 0.861 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.800 -16.651 -4.607 22.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.221 4.221 3 Si 0.839 3.161 4 H -0.174 1.174 5 H -0.193 1.193 6 H -0.192 1.192 7 C -0.491 4.491 8 H 0.119 0.881 9 O -0.140 6.140 10 C 0.064 3.936 11 C -0.263 4.263 12 C -0.073 4.073 13 C -0.197 4.197 14 C -0.017 4.017 15 N -0.238 5.238 16 C -0.086 4.086 17 C -0.146 4.146 18 C -0.190 4.190 19 C 0.052 3.948 20 H 0.095 0.905 21 O -0.397 6.397 22 C -0.071 4.071 23 C -0.073 4.073 24 C -0.228 4.228 25 H 0.082 0.918 26 H 0.135 0.865 27 H 0.157 0.843 28 H 0.117 0.883 29 H 0.111 0.889 30 H 0.037 0.963 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.061 0.939 35 H 0.106 0.894 36 H 0.246 0.754 37 H 0.097 0.903 38 H 0.038 0.962 39 H 0.157 0.843 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 13.402 -16.669 -4.065 21.772 hybrid contribution -0.644 1.795 -0.616 2.004 sum 12.759 -14.874 -4.681 20.148 Atomic orbital electron populations 1.70195 1.08088 1.28808 1.48806 1.26628 0.96871 1.02802 0.95757 0.84509 0.78216 0.74682 0.78653 1.17422 1.19263 1.19201 1.21868 0.92501 0.81408 1.53307 0.88135 1.83943 1.36065 1.12665 1.81334 1.19931 0.91714 0.87871 0.94058 1.21254 0.92987 1.00117 1.11979 1.20965 0.99645 0.90847 0.95857 1.20486 0.94022 0.96621 1.08594 1.21135 0.99418 0.90765 0.90344 1.62375 1.14260 1.44295 1.02868 1.22289 0.97183 0.93703 0.95436 1.21513 0.96681 1.01993 0.94428 1.22313 0.96990 0.99946 0.99765 1.21731 0.84321 0.97775 0.91009 0.90484 1.86455 1.32044 1.83127 1.38050 1.21902 0.91751 0.98823 0.94621 1.20879 0.93697 0.96444 0.96318 1.20451 0.99793 0.90866 1.11704 0.91780 0.86454 0.84268 0.88256 0.88880 0.96346 0.89052 0.90259 0.89653 0.93916 0.89436 0.75383 0.90343 0.96248 0.84316 0.87383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.43 13.67 21.61 0.30 -57.13 16 2 C -0.02 -1.34 5.49 84.83 0.47 -0.87 16 3 Si 1.02 43.33 29.55 68.60 2.03 45.36 16 4 H -0.25 -9.81 7.11 99.48 0.71 -9.11 16 5 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 6 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 7 C -0.41 -24.65 9.49 67.92 0.64 -24.01 16 8 H 0.10 5.49 5.20 -2.91 -0.02 5.48 16 9 O -0.23 -14.47 9.76 -22.72 -0.22 -14.69 16 10 C 0.11 5.91 6.65 22.58 0.15 6.06 16 11 C -0.24 -10.83 9.17 22.39 0.21 -10.63 16 12 C -0.05 -1.87 8.09 22.25 0.18 -1.69 16 13 C -0.19 -6.05 4.05 -19.84 -0.08 -6.13 16 14 C 0.11 2.49 5.55 85.56 0.48 2.97 16 15 N -0.51 -11.37 4.86 -900.89 -4.38 -15.75 16 16 C 0.04 0.89 4.81 86.33 0.42 1.30 16 17 C -0.11 -1.85 6.09 30.65 0.19 -1.66 16 18 C -0.15 -2.87 5.63 30.68 0.17 -2.70 16 19 C 0.11 2.28 3.63 30.65 0.11 2.40 16 20 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 21 O -0.59 -12.93 13.32 -148.98 -1.99 -14.92 16 22 C 0.06 1.44 4.19 86.33 0.36 1.80 16 23 C -0.05 -1.92 8.00 22.25 0.18 -1.74 16 24 C -0.21 -9.34 9.99 22.39 0.22 -9.12 16 25 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 26 H 0.12 5.30 5.64 -2.91 -0.02 5.29 16 27 H 0.14 3.81 8.02 -2.91 -0.02 3.79 16 28 H 0.10 1.89 8.01 -2.39 -0.02 1.87 16 29 H 0.09 1.88 8.08 -2.39 -0.02 1.86 16 30 H 0.02 0.50 6.54 -2.39 -0.02 0.49 16 31 H 0.09 1.64 8.06 -2.39 -0.02 1.62 16 32 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.40 4.78 9.08 -74.06 -0.67 4.11 16 37 H 0.08 1.92 8.12 -2.39 -0.02 1.90 16 38 H 0.02 0.62 6.46 -2.39 -0.02 0.61 16 39 H 0.14 4.03 8.02 -2.91 -0.02 4.00 16 40 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16 Total: -1.00 -73.84 321.63 -0.20 -74.04 By element: Atomic # 1 Polarization: 26.73 SS G_CDS: 0.37 Total: 27.10 kcal Atomic # 6 Polarization: -47.70 SS G_CDS: 3.69 Total: -44.01 kcal Atomic # 7 Polarization: -68.80 SS G_CDS: -4.08 Total: -72.88 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -2.21 Total: -29.61 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -73.84 -0.20 -74.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264592118.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.469 kcal (2) G-P(sol) polarization free energy of solvation -73.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds