Wall clock time and date at job start Mon Mar 30 2020 02:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35708 * 117.00179 * 2 1 4 4 C 1.39020 * 119.91169 * 359.97438 * 3 2 1 5 5 C 1.37682 * 120.09090 * 179.97438 * 4 3 2 6 6 C 1.39753 * 119.90860 * 0.02842 * 5 4 3 7 7 C 1.47602 * 120.08283 * 180.02562 * 6 5 4 8 8 O 1.21588 * 119.99586 * 129.90376 * 7 6 5 9 9 N 1.34772 * 120.00179 * 309.89626 * 7 6 5 10 10 C 1.46501 * 119.99977 * 4.48069 * 9 7 6 11 11 C 1.46496 * 120.00048 * 184.47690 * 9 7 6 12 12 H 1.08994 * 109.47369 * 0.02562 * 11 9 7 13 13 C 1.52998 * 109.47127 * 120.00359 * 11 9 7 14 14 C 1.50700 * 109.47427 * 240.00235 * 11 9 7 15 15 H 1.08005 * 119.99875 * 359.97438 * 14 11 9 16 16 C 1.37875 * 120.00435 * 180.02562 * 14 11 9 17 17 N 1.31520 * 119.99986 * 179.97438 * 16 14 11 18 18 Si 1.86799 * 119.99980 * 0.02562 * 16 14 11 19 19 H 1.48494 * 109.47134 * 89.99812 * 18 16 14 20 20 H 1.48505 * 109.46968 * 210.00395 * 18 16 14 21 21 H 1.48507 * 109.46912 * 329.99894 * 18 16 14 22 22 C 1.39709 * 119.82542 * 359.97438 * 6 5 4 23 23 C 1.50704 * 120.04213 * 180.02562 * 22 6 5 24 24 C 1.37725 * 119.91353 * 359.70444 * 22 6 5 25 25 H 1.08997 * 109.47152 * 60.00273 * 1 2 3 26 26 H 1.09005 * 109.47007 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47042 * 300.00450 * 1 2 3 28 28 H 1.08001 * 119.95227 * 0.02562 * 4 3 2 29 29 H 1.07997 * 120.04170 * 180.02562 * 5 4 3 30 30 H 1.09004 * 109.47183 * 93.16780 * 10 9 7 31 31 H 1.09002 * 109.46948 * 213.16829 * 10 9 7 32 32 H 1.08998 * 109.46758 * 333.16753 * 10 9 7 33 33 H 1.09000 * 109.47461 * 60.00307 * 13 11 9 34 34 H 1.09003 * 109.47563 * 179.97438 * 13 11 9 35 35 H 1.08997 * 109.47166 * 299.99588 * 13 11 9 36 36 H 0.96999 * 119.99340 * 179.97438 * 17 16 14 37 37 H 1.09000 * 109.47380 * 84.54606 * 23 22 6 38 38 H 1.09006 * 109.46920 * 204.54715 * 23 22 6 39 39 H 1.08996 * 109.47484 * 324.54029 * 23 22 6 40 40 H 1.07998 * 119.96035 * 180.31293 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 1.2862 2.3739 -0.0005 5 6 1.9075 3.6026 0.0000 6 6 3.3030 3.6778 0.0005 7 6 3.9730 4.9930 0.0016 8 8 4.8506 5.2274 0.8098 9 7 3.6121 5.9339 -0.8933 10 6 2.4897 5.6883 -1.8021 11 6 4.3422 7.2024 -0.9571 12 1 5.1370 7.2021 -0.2112 13 6 4.9513 7.3707 -2.3505 14 6 3.3950 8.3417 -0.6820 15 1 2.3531 8.1410 -0.4802 16 6 3.8581 9.6404 -0.6889 17 7 3.0312 10.6347 -0.4493 18 14 5.6596 9.9877 -1.0401 19 1 5.8522 10.1739 -2.5006 20 1 6.0744 11.2212 -0.3247 21 1 6.4842 8.8440 -0.5738 22 6 4.0621 2.5050 0.0010 23 6 5.5672 2.5804 0.0021 24 6 3.4331 1.2798 0.0071 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 0.2078 2.3149 -0.0005 29 1 1.3171 4.5070 0.0000 30 1 1.5738 6.0846 -1.3638 31 1 2.6794 6.1817 -2.7554 32 1 2.3809 4.6158 -1.9634 33 1 4.1567 7.3709 -3.0968 34 1 5.4941 8.3147 -2.3983 35 1 5.6365 6.5468 -2.5495 36 1 3.3571 11.5482 -0.4539 37 1 5.9245 2.6961 1.0253 38 1 5.9772 1.6650 -0.4247 39 1 5.8887 3.4346 -0.5938 40 1 4.0191 0.3726 0.0126 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266117805.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:40 Heat of formation + Delta-G solvation = -36.735600 kcal Electronic energy + Delta-G solvation = -21834.905110 eV Core-core repulsion = 18615.693793 eV Total energy + Delta-G solvation = -3219.211317 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.49733 -39.22475 -37.20095 -35.51478 -32.98597 -32.37077 -31.10172 -29.84422 -27.74541 -26.68128 -26.26768 -25.13213 -23.39705 -21.95036 -20.68377 -18.67691 -17.81730 -17.12221 -16.62112 -16.23440 -15.94216 -15.63228 -14.99667 -14.41772 -14.18691 -13.99594 -13.53034 -13.31624 -13.21015 -12.88749 -12.54158 -12.30246 -12.26872 -12.22008 -11.99979 -11.84174 -11.79350 -11.61090 -11.15132 -10.93325 -10.81946 -10.65585 -10.13653 -9.66123 -9.34886 -9.09454 -8.82705 -8.63680 -8.18037 -7.71637 -6.14571 -4.15068 1.15573 1.31787 3.07717 3.21871 3.23688 3.37069 3.39454 3.71146 3.91488 4.35266 4.67911 4.76379 4.92428 4.92858 4.97245 5.13212 5.19443 5.23254 5.30981 5.46166 5.69066 5.73435 5.82693 5.90921 6.00160 6.07024 6.21882 6.25120 6.26057 6.30006 6.33038 6.47854 6.56931 6.63875 6.83528 7.12514 7.24665 7.34192 7.62699 8.17852 8.46510 8.84187 8.90479 9.46457 10.98233 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030742 B = 0.004533 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.574756 B = 6175.539082 C = 6695.874552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.318 6.318 3 C 0.141 3.859 4 C -0.221 4.221 5 C -0.043 4.043 6 C -0.155 4.155 7 C 0.553 3.447 8 O -0.544 6.544 9 N -0.581 5.581 10 C 0.083 3.917 11 C 0.229 3.771 12 H 0.063 0.937 13 C -0.162 4.162 14 C -0.526 4.526 15 H 0.078 0.922 16 C 0.075 3.925 17 N -0.895 5.895 18 Si 0.883 3.117 19 H -0.277 1.277 20 H -0.294 1.294 21 H -0.263 1.263 22 C 0.000 4.000 23 C -0.114 4.114 24 C -0.161 4.161 25 H 0.057 0.943 26 H 0.098 0.902 27 H 0.056 0.944 28 H 0.131 0.869 29 H 0.135 0.865 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.033 0.967 36 H 0.266 0.734 37 H 0.083 0.917 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.573 -19.486 -2.780 20.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.231 6.231 3 C 0.095 3.905 4 C -0.240 4.240 5 C -0.062 4.062 6 C -0.158 4.158 7 C 0.340 3.660 8 O -0.423 6.423 9 N -0.311 5.311 10 C -0.061 4.061 11 C 0.128 3.872 12 H 0.081 0.919 13 C -0.220 4.220 14 C -0.565 4.565 15 H 0.096 0.904 16 C -0.127 4.127 17 N -0.533 5.533 18 Si 0.713 3.287 19 H -0.204 1.204 20 H -0.221 1.221 21 H -0.188 1.188 22 C -0.001 4.001 23 C -0.170 4.170 24 C -0.180 4.180 25 H 0.075 0.925 26 H 0.117 0.883 27 H 0.075 0.925 28 H 0.149 0.851 29 H 0.153 0.847 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.052 0.948 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.054 -19.318 -2.357 19.699 hybrid contribution 0.327 0.599 -0.279 0.737 sum -2.727 -18.719 -2.637 19.100 Atomic orbital electron populations 1.23070 0.78330 1.03832 1.01623 1.86008 1.21470 1.27132 1.88465 1.19154 0.92227 0.84024 0.95053 1.21113 1.00034 0.91976 1.10826 1.21209 0.93311 0.97716 0.93922 1.19903 0.93777 0.93834 1.08278 1.18127 0.82942 0.83545 0.81377 1.90738 1.32710 1.80603 1.38293 1.47805 1.32164 1.16742 1.34364 1.21763 0.89724 0.99992 0.94574 1.19303 0.93273 0.80899 0.93765 0.91884 1.22465 0.99856 0.99469 1.00177 1.21145 0.96932 0.89241 1.49139 0.90380 1.24864 0.97506 0.95970 0.94392 1.69877 1.34988 0.99382 1.49049 0.86914 0.86066 0.77811 0.77895 1.20406 1.22133 1.18780 1.19671 0.96342 0.90682 0.93423 1.20837 0.90030 1.02461 1.03690 1.20146 0.91132 0.97850 1.08881 0.92463 0.88336 0.92496 0.85130 0.84698 0.92703 0.91065 0.92099 0.92488 0.93085 0.94778 0.92447 0.89880 0.91676 0.90887 0.84908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.51 10.48 -18.83 -0.20 -3.71 16 3 C 0.14 1.76 6.70 -39.02 -0.26 1.50 16 4 C -0.22 -2.67 9.01 -39.49 -0.36 -3.02 16 5 C -0.04 -0.62 7.62 -39.22 -0.30 -0.91 16 6 C -0.15 -2.58 4.86 -104.96 -0.51 -3.09 16 7 C 0.55 11.46 6.29 -12.44 -0.08 11.38 16 8 O -0.54 -13.09 15.20 5.29 0.08 -13.00 16 9 N -0.58 -12.15 2.75 -176.47 -0.49 -12.64 16 10 C 0.08 1.40 8.38 59.85 0.50 1.90 16 11 C 0.23 5.56 2.23 -69.09 -0.15 5.41 16 12 H 0.06 1.69 5.97 -51.93 -0.31 1.38 16 13 C -0.16 -3.48 8.64 37.16 0.32 -3.16 16 14 C -0.53 -14.60 8.95 -34.44 -0.31 -14.90 16 15 H 0.08 2.32 7.80 -52.48 -0.41 1.91 16 16 C 0.08 2.15 5.45 -17.82 -0.10 2.05 16 17 N -0.90 -26.98 13.96 55.43 0.77 -26.21 16 18 Si 0.88 21.86 24.37 -169.99 -4.14 17.71 16 19 H -0.28 -6.54 6.87 56.52 0.39 -6.15 16 20 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 21 H -0.26 -6.42 6.53 56.52 0.37 -6.05 16 22 C 0.00 0.00 5.91 -104.26 -0.62 -0.62 16 23 C -0.11 -1.57 8.88 36.01 0.32 -1.25 16 24 C -0.16 -2.09 9.60 -39.49 -0.38 -2.47 16 25 H 0.06 0.36 7.65 -51.93 -0.40 -0.04 16 26 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.37 7.65 -51.93 -0.40 -0.03 16 28 H 0.13 1.22 6.28 -52.49 -0.33 0.89 16 29 H 0.14 1.87 6.67 -52.49 -0.35 1.52 16 30 H 0.05 0.91 7.50 -51.93 -0.39 0.53 16 31 H 0.07 1.17 6.44 -51.93 -0.33 0.84 16 32 H 0.06 0.86 5.70 -51.93 -0.30 0.57 16 33 H 0.06 1.14 6.68 -51.93 -0.35 0.79 16 34 H 0.05 1.14 3.27 -51.93 -0.17 0.97 16 35 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 37 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.06 0.70 8.05 -51.93 -0.42 0.28 16 39 H 0.07 1.13 7.09 -51.93 -0.37 0.77 16 40 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 317.13 15.07 4.78 4.78 Total: -1.00 -33.04 317.13 -5.51 -38.54 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -5.39 Total: 0.54 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -0.93 Total: -6.01 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.29 Total: -38.85 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.12 Total: -16.71 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.14 Total: 17.71 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.04 -5.51 -38.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266117805.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.807 kcal (2) G-P(sol) polarization free energy of solvation -33.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds