Wall clock time and date at job start Mon Mar 30 2020 02:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35708 * 117.00179 * 2 1 4 4 C 1.39020 * 119.91169 * 359.97438 * 3 2 1 5 5 C 1.37682 * 120.09090 * 179.97438 * 4 3 2 6 6 C 1.39753 * 119.90860 * 0.02842 * 5 4 3 7 7 C 1.47602 * 120.08283 * 180.02562 * 6 5 4 8 8 O 1.21588 * 119.99586 * 129.90376 * 7 6 5 9 9 N 1.34772 * 120.00179 * 309.89626 * 7 6 5 10 10 C 1.46501 * 119.99977 * 4.48069 * 9 7 6 11 11 C 1.46496 * 120.00048 * 184.47690 * 9 7 6 12 12 H 1.08994 * 109.47369 * 0.02562 * 11 9 7 13 13 C 1.52998 * 109.47127 * 120.00359 * 11 9 7 14 14 C 1.50700 * 109.47427 * 240.00235 * 11 9 7 15 15 H 1.08005 * 119.99875 * 359.97438 * 14 11 9 16 16 C 1.37875 * 120.00435 * 180.02562 * 14 11 9 17 17 N 1.31520 * 119.99986 * 179.97438 * 16 14 11 18 18 Si 1.86799 * 119.99980 * 0.02562 * 16 14 11 19 19 H 1.48494 * 109.47134 * 89.99812 * 18 16 14 20 20 H 1.48505 * 109.46968 * 210.00395 * 18 16 14 21 21 H 1.48507 * 109.46912 * 329.99894 * 18 16 14 22 22 C 1.39709 * 119.82542 * 359.97438 * 6 5 4 23 23 C 1.50704 * 120.04213 * 180.02562 * 22 6 5 24 24 C 1.37725 * 119.91353 * 359.70444 * 22 6 5 25 25 H 1.08997 * 109.47152 * 60.00273 * 1 2 3 26 26 H 1.09005 * 109.47007 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47042 * 300.00450 * 1 2 3 28 28 H 1.08001 * 119.95227 * 0.02562 * 4 3 2 29 29 H 1.07997 * 120.04170 * 180.02562 * 5 4 3 30 30 H 1.09004 * 109.47183 * 93.16780 * 10 9 7 31 31 H 1.09002 * 109.46948 * 213.16829 * 10 9 7 32 32 H 1.08998 * 109.46758 * 333.16753 * 10 9 7 33 33 H 1.09000 * 109.47461 * 60.00307 * 13 11 9 34 34 H 1.09003 * 109.47563 * 179.97438 * 13 11 9 35 35 H 1.08997 * 109.47166 * 299.99588 * 13 11 9 36 36 H 0.96999 * 119.99340 * 179.97438 * 17 16 14 37 37 H 1.09000 * 109.47380 * 84.54606 * 23 22 6 38 38 H 1.09006 * 109.46920 * 204.54715 * 23 22 6 39 39 H 1.08996 * 109.47484 * 324.54029 * 23 22 6 40 40 H 1.07998 * 119.96035 * 180.31293 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 1.2862 2.3739 -0.0005 5 6 1.9075 3.6026 0.0000 6 6 3.3030 3.6778 0.0005 7 6 3.9730 4.9930 0.0016 8 8 4.8506 5.2274 0.8098 9 7 3.6121 5.9339 -0.8933 10 6 2.4897 5.6883 -1.8021 11 6 4.3422 7.2024 -0.9571 12 1 5.1370 7.2021 -0.2112 13 6 4.9513 7.3707 -2.3505 14 6 3.3950 8.3417 -0.6820 15 1 2.3531 8.1410 -0.4802 16 6 3.8581 9.6404 -0.6889 17 7 3.0312 10.6347 -0.4493 18 14 5.6596 9.9877 -1.0401 19 1 5.8522 10.1739 -2.5006 20 1 6.0744 11.2212 -0.3247 21 1 6.4842 8.8440 -0.5738 22 6 4.0621 2.5050 0.0010 23 6 5.5672 2.5804 0.0021 24 6 3.4331 1.2798 0.0071 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 0.2078 2.3149 -0.0005 29 1 1.3171 4.5070 0.0000 30 1 1.5738 6.0846 -1.3638 31 1 2.6794 6.1817 -2.7554 32 1 2.3809 4.6158 -1.9634 33 1 4.1567 7.3709 -3.0968 34 1 5.4941 8.3147 -2.3983 35 1 5.6365 6.5468 -2.5495 36 1 3.3571 11.5482 -0.4539 37 1 5.9245 2.6961 1.0253 38 1 5.9772 1.6650 -0.4247 39 1 5.8887 3.4346 -0.5938 40 1 4.0191 0.3726 0.0126 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266117805.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:39 Heat of formation + Delta-G solvation = -58.935979 kcal Electronic energy + Delta-G solvation = -21835.867790 eV Core-core repulsion = 18615.693793 eV Total energy + Delta-G solvation = -3220.173997 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.66213 -40.48974 -38.34294 -37.24295 -34.85466 -33.58646 -32.68624 -31.14835 -28.67433 -27.82508 -27.47532 -27.16122 -24.70597 -23.24802 -22.00515 -20.22021 -18.98091 -18.70597 -18.09581 -17.68347 -17.18450 -16.77278 -16.59475 -15.73121 -15.49123 -15.31897 -14.75896 -14.75193 -14.53541 -14.24546 -14.11560 -13.85664 -13.67343 -13.48840 -13.30483 -13.05924 -12.97422 -12.88475 -12.74200 -12.56238 -12.06506 -11.85862 -11.77174 -11.58186 -11.36395 -10.80742 -10.74459 -9.86361 -9.46835 -9.19094 -8.35832 -6.40495 0.03293 0.28785 1.25593 1.35390 1.44111 1.77204 2.22056 2.27298 2.31383 2.68408 2.99421 3.62123 3.74101 3.81726 4.08794 4.28634 4.34181 4.38749 4.42572 4.45080 4.48204 4.56244 4.58257 4.66605 4.70647 4.73435 4.78713 4.89233 4.94602 5.02360 5.05668 5.23099 5.23897 5.30623 5.47384 5.51201 5.61122 5.69934 6.19194 6.37632 6.60178 6.68405 7.18717 7.32848 8.80259 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030742 B = 0.004533 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.574756 B = 6175.539082 C = 6695.874552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.324 6.324 3 C 0.150 3.850 4 C -0.212 4.212 5 C -0.046 4.046 6 C -0.182 4.182 7 C 0.549 3.451 8 O -0.590 6.590 9 N -0.589 5.589 10 C 0.084 3.916 11 C 0.231 3.769 12 H 0.032 0.968 13 C -0.154 4.154 14 C -0.527 4.527 15 H 0.044 0.956 16 C 0.024 3.976 17 N -0.939 5.939 18 Si 0.941 3.059 19 H -0.252 1.252 20 H -0.295 1.295 21 H -0.262 1.262 22 C -0.007 4.007 23 C -0.111 4.111 24 C -0.161 4.161 25 H 0.069 0.931 26 H 0.122 0.878 27 H 0.065 0.935 28 H 0.162 0.838 29 H 0.133 0.867 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.044 0.956 35 H 0.056 0.944 36 H 0.269 0.731 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.048 0.952 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.967 -22.197 -4.074 22.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.237 6.237 3 C 0.103 3.897 4 C -0.230 4.230 5 C -0.065 4.065 6 C -0.186 4.186 7 C 0.339 3.661 8 O -0.472 6.472 9 N -0.318 5.318 10 C -0.059 4.059 11 C 0.128 3.872 12 H 0.050 0.950 13 C -0.212 4.212 14 C -0.565 4.565 15 H 0.063 0.937 16 C -0.175 4.175 17 N -0.578 5.578 18 Si 0.768 3.232 19 H -0.177 1.177 20 H -0.223 1.223 21 H -0.187 1.187 22 C -0.008 4.008 23 C -0.167 4.167 24 C -0.179 4.179 25 H 0.087 0.913 26 H 0.140 0.860 27 H 0.083 0.917 28 H 0.179 0.821 29 H 0.151 0.849 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.109 0.891 33 H 0.090 0.910 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.116 0.884 39 H 0.067 0.933 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -3.483 -22.061 -3.683 22.636 hybrid contribution 0.272 1.282 0.194 1.325 sum -3.211 -20.779 -3.489 21.313 Atomic orbital electron populations 1.23433 0.76075 1.05888 1.02594 1.86021 1.23754 1.26145 1.87824 1.19275 0.92279 0.84746 0.93361 1.21351 1.01552 0.90789 1.09321 1.21218 0.92262 0.98797 0.94177 1.19664 0.94802 0.92028 1.12072 1.18799 0.82332 0.84791 0.80190 1.90693 1.34897 1.81667 1.39958 1.47862 1.32971 1.15723 1.35242 1.21926 0.88107 1.02060 0.93760 1.18994 0.92064 0.81407 0.94717 0.94978 1.22318 1.00567 0.99985 0.98319 1.21345 0.96071 0.90702 1.48403 0.93750 1.25643 1.01769 0.95781 0.94331 1.70003 1.37126 0.99928 1.50792 0.85977 0.80777 0.77319 0.79130 1.17699 1.22266 1.18679 1.19772 0.96592 0.90800 0.93598 1.20811 0.89969 1.03061 1.02871 1.20335 0.91834 0.97698 1.08075 0.91250 0.85963 0.91679 0.82098 0.84897 0.93079 0.90552 0.89072 0.91003 0.93751 0.92464 0.92232 0.90928 0.88357 0.93279 0.82731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.81 113.37 1.11 1.25 16 2 O -0.32 -5.91 10.48 -90.29 -0.95 -6.86 16 3 C 0.15 3.24 6.70 22.63 0.15 3.39 16 4 C -0.21 -4.48 9.01 22.33 0.20 -4.28 16 5 C -0.05 -1.25 7.62 22.50 0.17 -1.08 16 6 C -0.18 -6.03 4.86 -20.08 -0.10 -6.12 16 7 C 0.55 23.32 6.29 86.72 0.55 23.87 16 8 O -0.59 -29.63 15.20 -3.99 -0.06 -29.69 16 9 N -0.59 -25.01 2.75 -830.50 -2.29 -27.29 16 10 C 0.08 2.78 8.38 127.77 1.07 3.85 16 11 C 0.23 11.40 2.23 44.25 0.10 11.50 16 12 H 0.03 1.79 5.97 -2.39 -0.01 1.77 16 13 C -0.15 -6.45 8.64 71.98 0.62 -5.82 16 14 C -0.53 -30.10 8.95 25.60 0.23 -29.88 16 15 H 0.04 2.76 7.80 -2.91 -0.02 2.74 16 16 C 0.02 1.37 5.45 84.65 0.46 1.83 16 17 N -0.94 -58.05 13.96 21.45 0.30 -57.75 16 18 Si 0.94 45.42 24.37 68.60 1.67 47.09 16 19 H -0.25 -11.07 6.87 99.48 0.68 -10.39 16 20 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 21 H -0.26 -12.52 6.53 99.48 0.65 -11.87 16 22 C -0.01 -0.19 5.91 -19.63 -0.12 -0.30 16 23 C -0.11 -3.00 8.88 71.24 0.63 -2.37 16 24 C -0.16 -3.73 9.60 22.33 0.21 -3.52 16 25 H 0.07 0.56 7.65 -2.39 -0.02 0.54 16 26 H 0.12 0.67 8.14 -2.38 -0.02 0.65 16 27 H 0.06 0.57 7.65 -2.39 -0.02 0.56 16 28 H 0.16 2.36 6.28 -2.91 -0.02 2.34 16 29 H 0.13 3.61 6.67 -2.91 -0.02 3.59 16 30 H 0.05 1.72 7.50 -2.39 -0.02 1.70 16 31 H 0.08 2.43 6.44 -2.39 -0.02 2.41 16 32 H 0.09 2.46 5.70 -2.39 -0.01 2.44 16 33 H 0.07 2.76 6.68 -2.39 -0.02 2.74 16 34 H 0.04 1.91 3.27 -2.39 -0.01 1.90 16 35 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 37 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.10 1.91 8.05 -2.38 -0.02 1.89 16 39 H 0.05 1.55 7.09 -2.39 -0.02 1.53 16 40 H 0.16 2.85 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -74.30 317.13 4.94 -69.36 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 0.97 Total: 12.82 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: 5.30 Total: -7.68 kcal Atomic # 7 Polarization: -83.05 SS G_CDS: -1.99 Total: -85.04 kcal Atomic # 8 Polarization: -35.54 SS G_CDS: -1.01 Total: -36.55 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.67 Total: 47.09 kcal Total: -74.30 4.94 -69.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266117805.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.421 kcal (2) G-P(sol) polarization free energy of solvation -74.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds