Wall clock time and date at job start Mon Mar 30 2020 01:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99919 * 2 1 4 4 H 1.48498 * 109.46981 * 239.99747 * 3 2 1 5 5 H 1.48500 * 109.47254 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47110 * 119.99914 * 3 2 1 7 7 C 1.38818 * 119.99879 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99818 * 168.39168 * 7 2 1 9 9 N 1.36938 * 119.99891 * 348.39185 * 7 2 1 10 10 C 1.47143 * 120.98234 * 329.07354 * 9 7 2 11 11 C 1.53299 * 108.38784 * 230.55890 * 10 9 7 12 12 O 1.42959 * 109.21986 * 307.70134 * 11 10 9 13 13 C 1.42958 * 114.16727 * 62.58019 * 12 11 10 14 14 C 1.47146 * 120.97864 * 149.10225 * 9 7 2 15 15 H 1.08998 * 109.71169 * 249.17959 * 14 9 7 16 16 C 1.52996 * 109.68362 * 9.71579 * 14 9 7 17 17 C 1.53002 * 109.47410 * 291.50637 * 16 14 9 18 18 H 1.09002 * 109.46708 * 55.53045 * 17 16 14 19 19 O 1.42897 * 109.47191 * 295.53446 * 17 16 14 20 20 C 1.50700 * 109.47396 * 175.52912 * 17 16 14 21 21 C 1.38230 * 119.99549 * 84.72995 * 20 17 16 22 22 C 1.38241 * 120.00007 * 179.78798 * 21 20 17 23 23 C 1.38235 * 119.99522 * 0.44191 * 22 21 20 24 24 C 1.38230 * 120.00254 * 359.81035 * 23 22 21 25 25 C 1.38231 * 120.00127 * 265.00182 * 20 17 16 26 26 H 0.96995 * 119.99713 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.68432 * 110.83437 * 10 9 7 28 28 H 1.09007 * 109.68538 * 350.28351 * 10 9 7 29 29 H 1.09002 * 109.51494 * 187.77531 * 11 10 9 30 30 H 1.09000 * 109.51175 * 67.62190 * 11 10 9 31 31 H 1.09002 * 109.51196 * 177.49698 * 13 12 11 32 32 H 1.09000 * 109.55633 * 57.36446 * 13 12 11 33 33 H 1.09004 * 109.47205 * 171.51131 * 16 14 9 34 34 H 1.08998 * 109.47731 * 51.51065 * 16 14 9 35 35 H 0.96699 * 114.00252 * 299.99408 * 19 17 16 36 36 H 1.08005 * 120.00517 * 359.97438 * 21 20 17 37 37 H 1.07994 * 120.00281 * 180.27321 * 22 21 20 38 38 H 1.08001 * 119.99807 * 179.83662 * 23 22 21 39 39 H 1.07998 * 120.00287 * 179.97438 * 24 23 22 40 40 H 1.07994 * 119.99955 * 359.97438 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0737 -1.2119 -0.1877 9 7 1.3465 -2.3759 0.2397 10 6 0.1648 -2.4129 1.1156 11 6 0.3625 -3.5293 2.1475 12 8 0.6883 -4.7448 1.4691 13 6 1.9127 -4.6941 0.7330 14 6 1.7944 -3.6373 -0.3712 15 1 1.0679 -3.9638 -1.1154 16 6 3.1569 -3.4325 -1.0366 17 6 2.9980 -2.5191 -2.2537 18 1 2.5271 -1.5848 -1.9477 19 8 2.1812 -3.1662 -3.2315 20 6 4.3537 -2.2285 -2.8441 21 6 4.9206 -3.1137 -3.7418 22 6 6.1623 -2.8451 -4.2868 23 6 6.8409 -1.6957 -3.9272 24 6 6.2763 -0.8131 -3.0256 25 6 5.0327 -1.0796 -2.4838 26 1 -0.4849 0.8400 -0.0004 27 1 -0.7263 -2.6156 0.5216 28 1 0.0562 -1.4560 1.6264 29 1 -0.5567 -3.6654 2.7172 30 1 1.1743 -3.2607 2.8234 31 1 2.1088 -5.6683 0.2851 32 1 2.7308 -4.4302 1.4033 33 1 3.5542 -4.3963 -1.3551 34 1 3.8434 -2.9737 -0.3251 35 1 2.5397 -4.0059 -3.5500 36 1 4.3922 -4.0137 -4.0197 37 1 6.6034 -3.5344 -4.9915 38 1 7.8122 -1.4871 -4.3510 39 1 6.8066 0.0846 -2.7442 40 1 4.5914 -0.3901 -1.7795 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268723958.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:18 Heat of formation + Delta-G solvation = -44.250114 kcal Electronic energy + Delta-G solvation = -22577.840445 eV Core-core repulsion = 19358.303274 eV Total energy + Delta-G solvation = -3219.537171 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.49558 -38.35373 -36.55673 -34.55107 -32.39944 -31.23088 -30.62580 -30.45393 -27.58637 -26.96564 -23.66795 -23.39937 -22.35330 -21.51892 -20.46407 -19.48802 -17.31640 -16.68189 -15.93160 -15.58993 -15.32778 -14.89390 -14.63969 -14.48378 -14.04185 -13.86473 -13.53843 -13.26060 -12.99076 -12.89152 -12.56239 -12.50168 -11.59274 -11.40370 -11.25269 -11.08579 -10.89405 -10.81434 -10.72943 -10.49737 -10.30595 -10.08054 -9.85770 -9.68368 -9.46557 -8.83896 -8.72037 -8.54050 -8.35149 -6.61754 -5.85488 -3.32499 1.56684 1.60632 3.29052 3.35381 3.37340 3.99112 4.36644 4.60790 4.99515 5.00212 5.08451 5.14160 5.26531 5.29416 5.35533 5.60904 5.73893 5.81883 5.88913 5.90051 5.97506 6.09682 6.16160 6.21447 6.24288 6.30301 6.41035 6.47125 6.57578 6.66003 6.70033 6.74426 7.00063 7.14770 7.19345 7.26759 7.57711 7.66157 7.96201 8.20410 8.35542 9.10571 9.73490 10.35491 11.21054 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015024 B = 0.007632 C = 0.005598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.292073 B = 3667.715077 C = 5000.222109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.009 3.991 3 Si 0.893 3.107 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.282 1.282 7 C -0.256 4.256 8 H 0.070 0.930 9 N -0.588 5.588 10 C 0.144 3.856 11 C 0.036 3.964 12 O -0.396 6.396 13 C 0.052 3.948 14 C 0.142 3.858 15 H 0.044 0.956 16 C -0.126 4.126 17 C 0.127 3.873 18 H 0.159 0.841 19 O -0.548 6.548 20 C -0.098 4.098 21 C -0.121 4.121 22 C -0.123 4.123 23 C -0.133 4.133 24 C -0.120 4.120 25 C -0.108 4.108 26 H 0.256 0.744 27 H 0.028 0.972 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.039 0.961 31 H 0.077 0.923 32 H 0.041 0.959 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.353 0.647 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.562 -5.784 -3.639 11.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.191 4.191 3 Si 0.722 3.278 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.208 1.208 7 C -0.385 4.385 8 H 0.087 0.913 9 N -0.314 5.314 10 C 0.018 3.982 11 C -0.042 4.042 12 O -0.314 6.314 13 C -0.026 4.026 14 C 0.035 3.965 15 H 0.062 0.938 16 C -0.165 4.165 17 C 0.069 3.931 18 H 0.175 0.825 19 O -0.352 6.352 20 C -0.098 4.098 21 C -0.139 4.139 22 C -0.141 4.141 23 C -0.151 4.151 24 C -0.138 4.138 25 C -0.126 4.126 26 H 0.067 0.933 27 H 0.046 0.954 28 H 0.108 0.892 29 H 0.096 0.904 30 H 0.057 0.943 31 H 0.095 0.905 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.199 0.801 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.941 -5.255 -3.537 10.958 hybrid contribution 1.067 0.705 -0.089 1.282 sum 10.008 -4.550 -3.626 11.576 Atomic orbital electron populations 1.69967 1.05239 1.25764 1.52689 1.25181 0.95364 0.98215 1.00338 0.86533 0.79203 0.83760 0.78332 1.20392 1.21399 1.20803 1.18994 0.91143 0.83737 1.44663 0.91271 1.43988 1.32553 1.02781 1.52038 1.21381 0.89258 0.96735 0.90785 1.23332 0.98951 0.86512 0.95373 1.87775 1.41106 1.35668 1.66898 1.23018 0.86421 0.98998 0.94201 1.21065 0.94178 0.88344 0.92875 0.93825 1.22096 0.98248 0.98234 0.97873 1.21826 0.86264 0.99493 0.85475 0.82465 1.86787 1.50080 1.38343 1.59967 1.20958 0.97799 0.94459 0.96593 1.20885 0.95601 0.99314 0.98057 1.21028 0.95304 0.97526 1.00217 1.21052 0.99849 0.95221 0.98958 1.21144 0.95810 0.99360 0.97529 1.21198 0.94766 0.96951 0.99695 0.93330 0.95354 0.89188 0.90391 0.94300 0.90509 0.94092 0.92972 0.90723 0.80131 0.86538 0.86554 0.86635 0.86366 0.85442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.03 11.17 55.49 0.62 -24.41 16 2 C 0.01 0.24 5.04 -17.43 -0.09 0.16 16 3 Si 0.89 20.54 29.57 -169.99 -5.03 15.51 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 7 C -0.26 -6.44 6.46 -15.06 -0.10 -6.54 16 8 H 0.07 1.67 5.35 -52.49 -0.28 1.38 16 9 N -0.59 -14.18 3.03 -164.31 -0.50 -14.68 16 10 C 0.14 3.44 5.38 -3.54 -0.02 3.42 16 11 C 0.04 0.73 6.99 37.31 0.26 0.99 16 12 O -0.40 -8.14 10.74 -35.23 -0.38 -8.52 16 13 C 0.05 0.97 6.28 37.31 0.23 1.21 16 14 C 0.14 2.94 3.07 -67.43 -0.21 2.74 16 15 H 0.04 1.00 7.62 -51.93 -0.40 0.60 16 16 C -0.13 -2.27 3.87 -26.73 -0.10 -2.37 16 17 C 0.13 2.41 2.65 -27.88 -0.07 2.34 16 18 H 0.16 3.66 4.89 -51.93 -0.25 3.41 16 19 O -0.55 -10.23 12.53 -35.23 -0.44 -10.67 16 20 C -0.10 -1.64 5.00 -104.63 -0.52 -2.16 16 21 C -0.12 -1.71 9.33 -39.58 -0.37 -2.07 16 22 C -0.12 -1.56 10.05 -39.58 -0.40 -1.96 16 23 C -0.13 -1.69 10.05 -39.59 -0.40 -2.09 16 24 C -0.12 -1.71 10.05 -39.58 -0.40 -2.11 16 25 C -0.11 -1.81 9.68 -39.58 -0.38 -2.19 16 26 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.09 2.32 6.34 -51.93 -0.33 1.99 16 29 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 1.40 7.07 -51.93 -0.37 1.04 16 35 H 0.35 4.92 7.40 45.56 0.34 5.26 16 36 H 0.12 1.38 6.62 -52.48 -0.35 1.04 16 37 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 40 H 0.13 2.27 7.86 -52.49 -0.41 1.86 16 LS Contribution 316.74 15.07 4.77 4.77 Total: -1.00 -29.50 316.74 -8.50 -38.01 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -4.99 Total: 10.65 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -2.56 Total: -10.65 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 0.12 Total: -39.09 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.82 Total: -19.19 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.03 Total: 15.51 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.50 -8.50 -38.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268723958.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.242 kcal (2) G-P(sol) polarization free energy of solvation -29.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds