Wall clock time and date at job start Mon Mar 30 2020 01:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 119.99927 * 2 1 4 4 H 1.48504 * 109.47235 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47102 * 299.99828 * 3 2 1 6 6 H 1.48502 * 109.47488 * 59.99790 * 3 2 1 7 7 C 1.38809 * 120.00045 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00182 * 190.28258 * 7 2 1 9 9 N 1.36936 * 119.99902 * 10.01810 * 7 2 1 10 10 C 1.47153 * 120.98503 * 31.06838 * 9 7 2 11 11 C 1.53706 * 108.16358 * 129.43284 * 10 9 7 12 12 O 1.42958 * 109.14911 * 52.53915 * 11 10 9 13 13 C 1.42966 * 114.16879 * 297.29048 * 12 11 10 14 14 C 1.47159 * 120.98360 * 211.34963 * 9 7 2 15 15 H 1.08994 * 109.67846 * 110.78362 * 14 9 7 16 16 C 1.52998 * 109.67822 * 350.27139 * 14 9 7 17 17 C 1.53001 * 109.47114 * 68.66481 * 16 14 9 18 18 H 1.09003 * 109.47391 * 305.17417 * 17 16 14 19 19 O 1.42899 * 109.47129 * 65.17343 * 17 16 14 20 20 C 1.50697 * 109.47367 * 185.17287 * 17 16 14 21 21 C 1.38235 * 120.00252 * 279.72674 * 20 17 16 22 22 C 1.38234 * 120.00029 * 179.80704 * 21 20 17 23 23 C 1.38241 * 120.00225 * 0.41833 * 22 21 20 24 24 C 1.38231 * 119.99524 * 359.81447 * 23 22 21 25 25 C 1.38234 * 120.00332 * 359.97438 * 24 23 22 26 26 H 0.96998 * 119.99653 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.68033 * 249.21330 * 10 9 7 28 28 H 1.09003 * 109.68176 * 9.76319 * 10 9 7 29 29 H 1.09002 * 109.66085 * 292.57560 * 11 10 9 30 30 H 1.09008 * 109.48658 * 172.39699 * 11 10 9 31 31 H 1.08998 * 109.50721 * 302.65345 * 13 12 11 32 32 H 1.09000 * 109.55373 * 182.52902 * 13 12 11 33 33 H 1.09004 * 109.47346 * 188.65844 * 16 14 9 34 34 H 1.08999 * 109.47318 * 308.66467 * 16 14 9 35 35 H 0.96704 * 114.00095 * 60.00499 * 19 17 16 36 36 H 1.07999 * 119.99943 * 359.97438 * 21 20 17 37 37 H 1.08000 * 120.00195 * 180.21085 * 22 21 20 38 38 H 1.07996 * 119.99711 * 179.78578 * 23 22 21 39 39 H 1.08006 * 119.99662 * 179.97438 * 24 23 22 40 40 H 1.07999 * 120.00141 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0772 -1.2096 0.1675 9 7 1.3413 -2.3791 -0.2052 10 6 0.1405 -2.4295 -1.0544 11 6 0.3213 -3.5665 -2.0728 12 8 0.6575 -4.7696 -1.3777 13 6 1.8951 -4.7073 -0.6647 14 6 1.7982 -3.6298 0.4213 15 1 1.0843 -3.9404 1.1840 16 6 3.1723 -3.4146 1.0588 17 6 3.0350 -2.4818 2.2637 18 1 2.5474 -1.5574 1.9540 19 8 2.2497 -3.1196 3.2729 20 6 4.4022 -2.1682 2.8147 21 6 5.0396 -3.0756 3.6401 22 6 6.2954 -2.7896 4.1422 23 6 6.9102 -1.5926 3.8259 24 6 6.2708 -0.6832 3.0043 25 6 5.0168 -0.9710 2.4987 26 1 -0.4849 0.8401 -0.0004 27 1 -0.7375 -2.6214 -0.4377 28 1 0.0215 -1.4811 -1.5785 29 1 1.1212 -3.3122 -2.7682 30 1 -0.6078 -3.7120 -2.6240 31 1 2.7007 -4.4571 -1.3550 32 1 2.0987 -5.6731 -0.2022 33 1 3.5754 -4.3732 1.3856 34 1 3.8459 -2.9673 0.3279 35 1 2.6244 -3.9503 3.5964 36 1 4.5575 -4.0090 3.8906 37 1 6.7948 -3.5000 4.7844 38 1 7.8898 -1.3678 4.2210 39 1 6.7510 0.2522 2.7575 40 1 4.5171 -0.2603 1.8571 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268723962.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:24 Heat of formation + Delta-G solvation = -64.522419 kcal Electronic energy + Delta-G solvation = -22582.262201 eV Core-core repulsion = 19361.845958 eV Total energy + Delta-G solvation = -3220.416244 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.81647 -39.85907 -37.94955 -36.32042 -34.11052 -32.69683 -32.07352 -31.71639 -29.15744 -28.67148 -25.26563 -25.06343 -23.51561 -23.05000 -21.76626 -21.26475 -18.74365 -18.34170 -17.52651 -17.11853 -16.66005 -16.36332 -16.21469 -15.94390 -15.61612 -15.44454 -14.99775 -14.74863 -14.55361 -14.21879 -14.16729 -13.76023 -13.17690 -12.97215 -12.81725 -12.70668 -12.55310 -12.29972 -12.22675 -12.07018 -11.90034 -11.80001 -11.56901 -11.33301 -10.96316 -10.51875 -10.43495 -9.80292 -9.57353 -8.57427 -7.85647 -5.35267 0.46131 0.51728 1.40318 1.42809 1.50943 2.45150 2.88235 3.04846 3.28003 3.49342 3.69506 3.76051 4.03833 4.12831 4.21344 4.29548 4.33831 4.39964 4.46859 4.53142 4.58794 4.65250 4.68376 4.71033 4.82798 4.92351 5.04293 5.11500 5.14696 5.17464 5.37858 5.42216 5.59118 5.62316 5.63485 5.66585 5.84120 6.15084 6.32384 6.39486 6.97843 7.11643 7.80296 8.37756 9.19726 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015034 B = 0.007675 C = 0.005601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.039461 B = 3647.342462 C = 4997.763252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.049 4.049 3 Si 0.946 3.054 4 H -0.256 1.256 5 H -0.291 1.291 6 H -0.297 1.297 7 C -0.236 4.236 8 H 0.079 0.921 9 N -0.605 5.605 10 C 0.147 3.853 11 C 0.049 3.951 12 O -0.403 6.403 13 C 0.055 3.945 14 C 0.136 3.864 15 H 0.020 0.980 16 C -0.114 4.114 17 C 0.136 3.864 18 H 0.106 0.894 19 O -0.568 6.568 20 C -0.117 4.117 21 C -0.121 4.121 22 C -0.118 4.118 23 C -0.126 4.126 24 C -0.127 4.127 25 C -0.137 4.137 26 H 0.248 0.752 27 H -0.005 1.005 28 H 0.066 0.934 29 H 0.047 0.953 30 H 0.102 0.898 31 H 0.049 0.951 32 H 0.113 0.887 33 H 0.091 0.909 34 H 0.065 0.935 35 H 0.375 0.625 36 H 0.141 0.859 37 H 0.153 0.847 38 H 0.149 0.851 39 H 0.134 0.866 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.818 -7.755 4.472 15.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.244 4.244 3 Si 0.775 3.225 4 H -0.180 1.180 5 H -0.218 1.218 6 H -0.224 1.224 7 C -0.366 4.366 8 H 0.097 0.903 9 N -0.330 5.330 10 C 0.021 3.979 11 C -0.028 4.028 12 O -0.322 6.322 13 C -0.023 4.023 14 C 0.030 3.970 15 H 0.037 0.963 16 C -0.152 4.152 17 C 0.077 3.923 18 H 0.123 0.877 19 O -0.375 6.375 20 C -0.117 4.117 21 C -0.139 4.139 22 C -0.135 4.135 23 C -0.144 4.144 24 C -0.145 4.145 25 C -0.155 4.155 26 H 0.057 0.943 27 H 0.013 0.987 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.120 0.880 31 H 0.067 0.933 32 H 0.131 0.869 33 H 0.109 0.891 34 H 0.083 0.917 35 H 0.224 0.776 36 H 0.158 0.842 37 H 0.170 0.830 38 H 0.167 0.833 39 H 0.152 0.848 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 12.244 -7.272 4.372 14.896 hybrid contribution 0.133 1.261 -0.071 1.270 sum 12.376 -6.011 4.301 14.415 Atomic orbital electron populations 1.70139 1.06617 1.25430 1.55930 1.25842 0.95995 1.01064 1.01524 0.85512 0.79430 0.80927 0.76669 1.17970 1.21830 1.22435 1.19372 0.91360 0.83976 1.41920 0.90332 1.44348 1.30589 1.04351 1.53760 1.21313 0.87980 0.97005 0.91557 1.23250 1.00429 0.85248 0.93909 1.87768 1.40953 1.36101 1.67412 1.23130 0.85612 0.99770 0.93776 1.21257 0.94920 0.87507 0.93271 0.96259 1.22000 0.96169 0.99804 0.97256 1.21294 0.87555 0.97503 0.85910 0.87702 1.86722 1.51893 1.41180 1.57732 1.20729 0.96962 0.95345 0.98676 1.21159 0.95840 0.99476 0.97445 1.21477 0.94709 0.97639 0.99713 1.21486 1.00914 0.94050 0.97972 1.21373 0.94481 1.00602 0.98059 1.21186 0.96698 0.96904 1.00749 0.94300 0.98655 0.91534 0.93490 0.87978 0.93318 0.86870 0.89091 0.91664 0.77590 0.84177 0.82973 0.83304 0.84814 0.88130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.44 11.08 21.65 0.24 -55.20 16 2 C -0.05 -2.68 5.08 84.86 0.43 -2.25 16 3 Si 0.95 44.16 29.57 68.60 2.03 46.19 16 4 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 5 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 6 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 7 C -0.24 -12.31 6.46 84.03 0.54 -11.76 16 8 H 0.08 3.92 5.56 -2.91 -0.02 3.91 16 9 N -0.61 -29.95 3.03 -672.95 -2.04 -31.99 16 10 C 0.15 7.31 5.40 86.49 0.47 7.78 16 11 C 0.05 1.97 7.00 72.22 0.51 2.47 16 12 O -0.40 -15.94 10.74 -148.98 -1.60 -17.54 16 13 C 0.05 1.93 6.28 72.08 0.45 2.38 16 14 C 0.14 5.60 3.06 44.96 0.14 5.74 16 15 H 0.02 0.90 7.64 -2.39 -0.02 0.88 16 16 C -0.11 -3.97 3.87 30.59 0.12 -3.85 16 17 C 0.14 5.14 2.64 29.85 0.08 5.22 16 18 H 0.11 5.10 4.88 -2.39 -0.01 5.09 16 19 O -0.57 -20.96 12.61 -148.98 -1.88 -22.84 16 20 C -0.12 -3.78 4.97 -19.87 -0.10 -3.88 16 21 C -0.12 -3.01 9.32 22.27 0.21 -2.81 16 22 C -0.12 -2.44 10.05 22.27 0.22 -2.21 16 23 C -0.13 -2.71 10.05 22.27 0.22 -2.48 16 24 C -0.13 -3.38 10.05 22.27 0.22 -3.15 16 25 C -0.14 -4.59 9.67 22.27 0.22 -4.37 16 26 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 27 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 28 H 0.07 3.62 6.30 -2.39 -0.02 3.61 16 29 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.10 3.53 8.14 -2.38 -0.02 3.51 16 31 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 33 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.06 2.40 7.06 -2.39 -0.02 2.38 16 35 H 0.38 9.68 7.50 -74.05 -0.56 9.12 16 36 H 0.14 2.70 6.78 -2.91 -0.02 2.68 16 37 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 38 H 0.15 2.20 8.06 -2.91 -0.02 2.17 16 39 H 0.13 3.00 8.06 -2.91 -0.02 2.98 16 40 H 0.10 3.79 8.04 -2.91 -0.02 3.76 16 Total: -1.00 -67.83 317.32 0.97 -66.86 By element: Atomic # 1 Polarization: 27.21 SS G_CDS: 0.49 Total: 27.70 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: 3.73 Total: -13.18 kcal Atomic # 7 Polarization: -85.39 SS G_CDS: -1.80 Total: -87.19 kcal Atomic # 8 Polarization: -36.90 SS G_CDS: -3.48 Total: -40.38 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -67.83 0.97 -66.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268723962.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.339 kcal (2) G-P(sol) polarization free energy of solvation -67.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds