Wall clock time and date at job start Mon Mar 30 2020 01:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00115 * 2 1 4 4 H 1.48498 * 109.47011 * 269.99836 * 3 2 1 5 5 H 1.48495 * 109.47264 * 30.00021 * 3 2 1 6 6 H 1.48505 * 109.46944 * 150.00152 * 3 2 1 7 7 C 1.37882 * 119.99655 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99836 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99957 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.46799 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.47262 * 179.97438 * 10 9 7 12 12 C 1.34771 * 120.00544 * 179.97438 * 11 10 9 13 13 O 1.21282 * 119.99834 * 0.02562 * 12 11 10 14 14 C 1.50703 * 120.00433 * 180.02562 * 12 11 10 15 15 C 1.52995 * 109.47151 * 180.02562 * 14 12 11 16 16 C 1.53001 * 109.47181 * 180.02562 * 15 14 12 17 17 O 1.42902 * 109.47386 * 180.02562 * 16 15 14 18 18 C 1.35898 * 116.99694 * 180.02562 * 17 16 15 19 19 C 1.38735 * 120.05254 * 179.97438 * 18 17 16 20 20 C 1.38144 * 119.94607 * 179.97438 * 19 18 17 21 21 C 1.38266 * 120.05233 * 0.02562 * 20 19 18 22 22 C 1.38269 * 120.11595 * 359.95530 * 21 20 19 23 23 C 1.38142 * 120.04935 * 0.04230 * 22 21 20 24 24 H 0.97002 * 119.99802 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47309 * 59.99472 * 9 7 2 26 26 H 1.09001 * 109.46639 * 299.99137 * 9 7 2 27 27 H 1.09008 * 109.47220 * 60.00092 * 10 9 7 28 28 H 1.09001 * 109.47670 * 299.99909 * 10 9 7 29 29 H 0.96998 * 119.99602 * 359.97438 * 11 10 9 30 30 H 1.08999 * 109.46805 * 59.99987 * 14 12 11 31 31 H 1.08993 * 109.46945 * 300.00151 * 14 12 11 32 32 H 1.08999 * 109.47370 * 60.00219 * 15 14 12 33 33 H 1.09006 * 109.47017 * 300.00060 * 15 14 12 34 34 H 1.08999 * 109.46920 * 59.99785 * 16 15 14 35 35 H 1.08998 * 109.47220 * 300.00155 * 16 15 14 36 36 H 1.08002 * 120.02704 * 359.70561 * 19 18 17 37 37 H 1.08001 * 119.97447 * 179.97438 * 20 19 18 38 38 H 1.08000 * 119.94089 * 179.97438 * 21 20 19 39 39 H 1.07992 * 119.97577 * 180.02562 * 22 21 20 40 40 H 1.08005 * 120.02748 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9308 0.0012 12 6 2.1864 -6.0980 0.0007 13 8 3.3992 -6.0981 0.0003 14 6 1.4329 -7.4031 0.0008 15 6 2.4271 -8.5660 0.0009 16 6 1.6621 -9.8911 0.0003 17 8 2.5906 -10.9773 0.0010 18 6 2.0711 -12.2330 0.0001 19 6 2.9151 -13.3341 0.0002 20 6 2.3846 -14.6096 -0.0002 21 6 1.0136 -14.7894 -0.0013 22 6 0.1703 -13.6936 -0.0010 23 6 0.6959 -12.4161 -0.0005 24 1 -0.4850 0.8401 0.0004 25 1 0.6245 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8904 27 1 2.8718 -3.6044 0.8906 28 1 2.8718 -3.6044 -0.8894 29 1 0.5426 -4.9308 0.0019 30 1 0.8059 -7.4607 -0.8890 31 1 0.8065 -7.4610 0.8909 32 1 3.0537 -8.5083 0.8909 33 1 3.0538 -8.5083 -0.8891 34 1 1.0357 -9.9486 -0.8899 35 1 1.0350 -9.9490 0.8900 36 1 3.9860 -13.1942 -0.0038 37 1 3.0412 -15.4671 -0.0006 38 1 0.6008 -15.7874 -0.0020 39 1 -0.9001 -13.8366 -0.0014 40 1 0.0368 -11.5605 -0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272990002.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:26 Heat of formation + Delta-G solvation = -75.286657 kcal Electronic energy + Delta-G solvation = -19575.508443 eV Core-core repulsion = 16354.625427 eV Total energy + Delta-G solvation = -3220.883016 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.38589 -39.32611 -37.74575 -34.99707 -33.86898 -32.85486 -31.32949 -30.28458 -29.68581 -27.36593 -24.74994 -23.32115 -22.55196 -21.54335 -20.91843 -19.99869 -18.51444 -16.99558 -16.63570 -16.42927 -16.18781 -15.81146 -15.35536 -15.09262 -14.69955 -14.48086 -14.06124 -13.82044 -13.66307 -13.14160 -12.99545 -12.46630 -12.46248 -12.21007 -11.85801 -11.69186 -11.53141 -11.22875 -11.04697 -11.02708 -10.81103 -10.65826 -10.35313 -9.83880 -9.49118 -9.33566 -9.21372 -8.56899 -8.50287 -8.37861 -6.11547 -4.14391 1.00920 1.13623 2.83366 2.96813 3.28177 3.34327 3.38443 3.47566 3.72409 4.39945 4.47277 4.55725 4.67283 4.72038 4.79745 4.83035 5.02142 5.06115 5.16320 5.18828 5.25573 5.27687 5.36276 5.51343 5.67796 5.90066 5.97795 6.08184 6.11546 6.20562 6.32030 6.32430 6.46677 6.71420 6.89054 7.15667 7.48955 7.58848 7.86567 7.98181 8.25442 8.62228 8.91621 9.50577 11.00010 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.068121 B = 0.002004 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.936090 B =13965.451878 C =14340.035185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.012 3.988 10 C 0.121 3.879 11 N -0.723 5.723 12 C 0.505 3.495 13 O -0.550 6.550 14 C -0.138 4.138 15 C -0.103 4.103 16 C 0.060 3.940 17 O -0.313 6.313 18 C 0.133 3.867 19 C -0.155 4.155 20 C -0.082 4.082 21 C -0.164 4.164 22 C -0.081 4.081 23 C -0.211 4.211 24 H 0.262 0.738 25 H 0.022 0.978 26 H 0.022 0.978 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.398 0.602 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.808 -27.543 0.000 27.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.078 0.922 9 C -0.025 4.025 10 C -0.002 4.002 11 N -0.373 5.373 12 C 0.290 3.710 13 O -0.429 6.429 14 C -0.179 4.179 15 C -0.141 4.141 16 C -0.015 4.015 17 O -0.226 6.226 18 C 0.088 3.912 19 C -0.174 4.174 20 C -0.100 4.100 21 C -0.182 4.182 22 C -0.099 4.099 23 C -0.230 4.230 24 H 0.072 0.928 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.231 0.769 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.880 -27.312 0.004 27.327 hybrid contribution -0.448 1.043 -0.012 1.135 sum -1.328 -26.270 -0.008 26.303 Atomic orbital electron populations 1.69955 1.06089 1.26888 1.50376 1.25003 0.94909 0.99441 0.94966 0.86502 0.79838 0.82950 0.78210 1.20549 1.21152 1.19726 1.21058 0.93265 0.90402 1.51365 0.92242 1.19326 0.94207 0.91163 0.97832 1.21727 0.96063 0.81574 1.00795 1.46346 1.10543 1.06630 1.73771 1.20440 0.88252 0.85536 0.76763 1.90690 1.14071 1.87842 1.50259 1.21531 0.99139 0.92637 1.04567 1.21222 0.97983 0.89443 1.05445 1.22891 0.91905 0.85275 1.01459 1.86089 1.36267 1.12069 1.88182 1.19082 0.91951 0.84802 0.95386 1.20501 0.99966 0.90442 1.06466 1.20980 0.95322 0.96171 0.97492 1.21067 0.93604 0.98877 1.04640 1.20969 0.99841 0.91908 0.97159 1.21317 0.93986 0.98777 1.08886 0.92840 0.95949 0.95928 0.92574 0.92568 0.76865 0.88769 0.88775 0.89929 0.89937 0.91828 0.91836 0.85161 0.85431 0.86007 0.85830 0.85360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.97 13.29 55.43 0.74 -25.24 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.33 29.54 -169.99 -5.02 16.30 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.01 0.30 5.09 -27.89 -0.14 0.16 16 10 C 0.12 2.55 5.61 -4.04 -0.02 2.52 16 11 N -0.72 -12.13 5.56 -60.29 -0.33 -12.47 16 12 C 0.50 8.08 7.83 -10.99 -0.09 8.00 16 13 O -0.55 -11.11 15.98 5.56 0.09 -11.02 16 14 C -0.14 -1.45 5.70 -27.88 -0.16 -1.61 16 15 C -0.10 -1.13 4.87 -26.73 -0.13 -1.26 16 16 C 0.06 0.54 4.74 37.16 0.18 0.72 16 17 O -0.31 -3.55 10.14 -19.42 -0.20 -3.75 16 18 C 0.13 1.39 6.69 -39.22 -0.26 1.12 16 19 C -0.16 -1.45 9.99 -39.43 -0.39 -1.84 16 20 C -0.08 -0.62 10.04 -39.61 -0.40 -1.02 16 21 C -0.16 -1.20 10.04 -39.56 -0.40 -1.60 16 22 C -0.08 -0.62 10.04 -39.61 -0.40 -1.02 16 23 C -0.21 -1.86 9.04 -39.44 -0.36 -2.22 16 24 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 1.24 8.14 -51.92 -0.42 0.81 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.40 5.62 8.47 -40.82 -0.35 5.27 16 30 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 33 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 34 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 35 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 36 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 37 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 38 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 39 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 40 H 0.13 0.93 6.30 -52.48 -0.33 0.60 16 LS Contribution 343.50 15.07 5.18 5.18 Total: -1.00 -32.77 343.50 -8.61 -41.38 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -6.08 Total: 0.89 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -2.98 Total: -11.27 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.40 Total: -37.71 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -0.11 Total: -14.77 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.77 -8.61 -41.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272990002.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.903 kcal (2) G-P(sol) polarization free energy of solvation -32.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds