Wall clock time and date at job start Mon Mar 30 2020 01:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00240 * 2 1 4 4 H 1.48498 * 109.47112 * 270.00033 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00301 * 3 2 1 6 6 H 1.48494 * 109.47201 * 150.00275 * 3 2 1 7 7 C 1.37885 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99708 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99883 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46969 * 180.02562 * 9 7 2 11 11 N 1.46506 * 109.47237 * 179.97438 * 10 9 7 12 12 C 1.34773 * 119.99969 * 179.72043 * 11 10 9 13 13 O 1.21281 * 120.00220 * 0.02562 * 12 11 10 14 14 C 1.50706 * 120.00080 * 180.02562 * 12 11 10 15 15 H 1.08996 * 109.46583 * 54.99927 * 14 12 11 16 16 O 1.42895 * 109.47069 * 175.00410 * 14 12 11 17 17 C 1.53004 * 109.46922 * 295.00517 * 14 12 11 18 18 C 1.53000 * 109.47099 * 174.99725 * 17 14 12 19 19 C 1.50697 * 109.47113 * 179.97438 * 18 17 14 20 20 C 1.38242 * 119.99694 * 269.72481 * 19 18 17 21 21 C 1.38234 * 119.99423 * 179.76782 * 20 19 18 22 22 C 1.38237 * 120.00105 * 0.50883 * 21 20 19 23 23 C 1.38230 * 120.00131 * 359.74494 * 22 21 20 24 24 C 1.38227 * 120.00019 * 90.00181 * 19 18 17 25 25 H 0.96999 * 119.99905 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47664 * 59.99992 * 9 7 2 27 27 H 1.09002 * 109.46824 * 299.99463 * 9 7 2 28 28 H 1.09001 * 109.47671 * 59.99812 * 10 9 7 29 29 H 1.08998 * 109.47454 * 299.99809 * 10 9 7 30 30 H 0.97005 * 119.99811 * 0.02562 * 11 10 9 31 31 H 0.96696 * 114.00209 * 60.00190 * 16 14 12 32 32 H 1.08996 * 109.46820 * 294.99976 * 17 14 12 33 33 H 1.09001 * 109.47200 * 55.00070 * 17 14 12 34 34 H 1.09001 * 109.46858 * 300.00153 * 18 17 14 35 35 H 1.09002 * 109.46807 * 59.99554 * 18 17 14 36 36 H 1.07995 * 119.99805 * 0.02562 * 20 19 18 37 37 H 1.08000 * 119.99771 * 180.22947 * 21 20 19 38 38 H 1.08002 * 119.99715 * 179.72745 * 22 21 20 39 39 H 1.08000 * 120.00156 * 179.97438 * 23 22 21 40 40 H 1.08005 * 120.00243 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 7 1.5126 -4.9309 -0.0020 12 6 2.1864 -6.0980 -0.0076 13 8 3.3993 -6.0981 -0.0117 14 6 1.4329 -7.4032 -0.0087 15 1 0.7380 -7.4207 -0.8482 16 8 2.3567 -8.4864 -0.1322 17 6 0.6543 -7.5437 1.3009 18 6 -0.2076 -8.8067 1.2488 19 6 -0.9740 -8.9453 2.5390 20 6 -0.4265 -9.6482 3.5960 21 6 -1.1275 -9.7713 4.7810 22 6 -2.3804 -9.2006 4.9055 23 6 -2.9300 -8.5022 3.8467 24 6 -2.2268 -8.3746 2.6634 25 1 -0.4850 0.8400 0.0004 26 1 0.6246 -2.5564 -0.8919 27 1 0.6240 -2.5575 0.8881 28 1 2.8712 -3.6048 0.8890 29 1 2.8725 -3.6040 -0.8909 30 1 0.5425 -4.9308 -0.0028 31 1 3.0064 -8.5327 0.5825 32 1 1.3540 -7.6153 2.1336 33 1 0.0141 -6.6723 1.4382 34 1 -0.9072 -8.7349 0.4161 35 1 0.4326 -9.6780 1.1114 36 1 0.5505 -10.0976 3.4972 37 1 -0.6983 -10.3173 5.6081 38 1 -2.9299 -9.3005 5.8298 39 1 -3.9090 -8.0566 3.9438 40 1 -2.6566 -7.8296 1.8359 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273095073.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:57 Heat of formation + Delta-G solvation = -91.742161 kcal Electronic energy + Delta-G solvation = -20396.463968 eV Core-core repulsion = 17174.867388 eV Total energy + Delta-G solvation = -3221.596580 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.92930 -39.31592 -36.82175 -34.96707 -34.03302 -32.88840 -31.07376 -30.80888 -29.45485 -26.83086 -24.59792 -22.95955 -22.76303 -21.11985 -21.02071 -20.28536 -17.68388 -16.94043 -16.66459 -16.16280 -15.95019 -15.36413 -15.19290 -14.73670 -14.48696 -14.46577 -13.68985 -13.62561 -13.42675 -13.14089 -12.97038 -12.86450 -12.32745 -12.15775 -11.71704 -11.42543 -11.27856 -11.24270 -11.06446 -10.96673 -10.70549 -10.64478 -10.37271 -9.79010 -9.44323 -9.16674 -9.10966 -8.82129 -8.60186 -8.40310 -6.12222 -4.15179 1.15709 1.21243 2.83656 3.27709 3.33798 3.37421 3.51755 3.62690 4.21985 4.39174 4.47314 4.60708 4.79835 4.82644 4.90531 4.94306 5.02787 5.18561 5.24950 5.28642 5.33748 5.44603 5.52337 5.76379 5.83115 5.90250 5.99228 6.27568 6.27919 6.29647 6.32849 6.45221 6.68600 6.82060 6.83146 7.41649 7.48813 7.57324 7.85526 7.92478 8.23891 8.53258 8.90632 9.49862 10.99328 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016841 B = 0.003296 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.245590 B = 8492.328551 C = 9733.820396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.523 4.523 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.120 3.880 11 N -0.717 5.717 12 C 0.476 3.524 13 O -0.545 6.545 14 C 0.093 3.907 15 H 0.123 0.877 16 O -0.540 6.540 17 C -0.141 4.141 18 C -0.076 4.076 19 C -0.081 4.081 20 C -0.118 4.118 21 C -0.120 4.120 22 C -0.127 4.127 23 C -0.118 4.118 24 C -0.117 4.117 25 H 0.262 0.738 26 H 0.022 0.978 27 H 0.022 0.978 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.398 0.602 31 H 0.382 0.618 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.801 -20.048 6.585 21.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.077 0.923 9 C -0.025 4.025 10 C -0.002 4.002 11 N -0.368 5.368 12 C 0.260 3.740 13 O -0.423 6.423 14 C 0.030 3.970 15 H 0.140 0.860 16 O -0.345 6.345 17 C -0.179 4.179 18 C -0.113 4.113 19 C -0.081 4.081 20 C -0.136 4.136 21 C -0.138 4.138 22 C -0.145 4.145 23 C -0.136 4.136 24 C -0.135 4.135 25 H 0.072 0.928 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.232 0.768 31 H 0.230 0.770 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.407 -20.034 6.048 21.614 hybrid contribution 0.159 1.231 0.577 1.369 sum -5.248 -18.803 6.625 20.615 Atomic orbital electron populations 1.69949 1.06089 1.26910 1.50309 1.24995 0.94901 0.99425 0.94937 0.86508 0.79845 0.82966 0.78226 1.20536 1.21139 1.19724 1.21047 0.93246 0.90388 1.51454 0.92266 1.19321 0.94172 0.91115 0.97845 1.21753 0.96112 0.81544 1.00822 1.46385 1.10567 1.06654 1.73228 1.21478 0.88883 0.86515 0.77104 1.90689 1.13902 1.87607 1.50128 1.21898 0.90680 0.84959 0.99500 0.85987 1.86541 1.46812 1.47743 1.53367 1.22245 0.99422 0.99128 0.97131 1.20561 0.97962 0.98501 0.94317 1.19935 0.94815 0.97400 0.95919 1.21080 0.99901 0.99464 0.93147 1.21148 0.95113 0.99936 0.97612 1.21152 0.95974 0.98576 0.98843 1.21177 1.00012 0.98962 0.93466 1.21121 0.94585 0.99681 0.98065 0.92819 0.95923 0.95926 0.92547 0.92506 0.76839 0.76977 0.90766 0.89958 0.90598 0.90069 0.86107 0.86223 0.86288 0.86067 0.85869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.90 13.29 55.43 0.74 -25.16 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.01 0.31 5.09 -27.89 -0.14 0.17 16 10 C 0.12 2.52 5.61 -4.04 -0.02 2.50 16 11 N -0.72 -12.02 5.45 -60.29 -0.33 -12.35 16 12 C 0.48 7.74 7.17 -10.98 -0.08 7.66 16 13 O -0.55 -11.08 16.32 -14.30 -0.23 -11.31 16 14 C 0.09 1.08 3.38 -27.88 -0.09 0.99 16 15 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 16 O -0.54 -6.63 12.53 -55.09 -0.69 -7.32 16 17 C -0.14 -1.38 4.85 -26.73 -0.13 -1.51 16 18 C -0.08 -0.65 5.24 -27.88 -0.15 -0.80 16 19 C -0.08 -0.76 5.13 -104.63 -0.54 -1.30 16 20 C -0.12 -1.09 9.70 -39.58 -0.38 -1.47 16 21 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 22 C -0.13 -1.11 10.05 -39.58 -0.40 -1.51 16 23 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 24 C -0.12 -1.10 9.70 -39.59 -0.38 -1.48 16 25 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.40 5.65 8.19 -40.82 -0.33 5.32 16 31 H 0.38 3.94 8.79 45.56 0.40 4.34 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.81 7.78 -51.93 -0.40 0.41 16 34 H 0.08 0.59 8.09 -51.93 -0.42 0.17 16 35 H 0.08 0.68 7.76 -51.93 -0.40 0.28 16 36 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 LS Contribution 344.82 15.07 5.20 5.20 Total: -1.00 -32.76 344.82 -9.22 -41.98 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -5.35 Total: 5.56 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: -3.52 Total: -12.85 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.41 Total: -37.51 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.92 Total: -18.63 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.76 -9.22 -41.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273095073.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.765 kcal (2) G-P(sol) polarization free energy of solvation -32.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds